CF417342

Overview
NameCF417342
Unique NameCF417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_FRATN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella tularensis subsp. novicida (strain U112) GN=gpmI PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.530e-23
Identity = 72/202 (35.64%), Postives = 112/202 (55.45%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LHLIGLLS GGVHS  + +  ++K A ++G KR+ LH   DGRD    S+   ++  +K L +L        IAS  GR Y  MDR +N WD V++ ++A V   A   + SA+EA+++   +  +++  +P    + ++G  V  + D D+V+  NFRADR   ++ A   E FD F R +   I +  + +YD +LK  V
Sbjct:  110 LHLIGLLSPGGVHSHEEHIFEMIKIAKQKGIKRLYLHAFLDGRDTPPRSAEKSIKKADKLLQDLN----LGYIASVCGR-YYAMDR-DNRWDRVEKAYNAIVNANADFIYDSALEALEQSYARDQSDEFVIP--TCIKKDGHLV-KVQDNDSVIFMNFRADRAREISHAFTDESFDHFPRKKHLNINFTTLTEYDSKLKCAV 302          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_FRATH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella tularensis subsp. holarctica (strain LVS) GN=gpmI PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.530e-23
Identity = 72/202 (35.64%), Postives = 112/202 (55.45%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LHLIGLLS GGVHS  + +  ++K A ++G KR+ LH   DGRD    S+   ++  +K L +L        IAS  GR Y  MDR +N WD V++ ++A V   A   + SA+EA+++   +  +++  +P    + ++G  V  + D D+V+  NFRADR   ++ A   E FD F R +   I +  + +YD +LK  V
Sbjct:  110 LHLIGLLSPGGVHSHEEHIFEMIKIAKQKGIKRLYLHAFLDGRDTPPRSAEKSIKKADKLLQDLN----LGYIASVCGR-YYAMDR-DNRWDRVEKAYNAIVNANADFIYDSALEALEQSYARDQSDEFVIP--TCIKKDGHLV-KVQDNDSVIFMNFRADRAREISHAFTDESFDHFPRKKHLNINFTTLTEYDSKLKCAV 302          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_FRATF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=gpmI PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.530e-23
Identity = 72/202 (35.64%), Postives = 112/202 (55.45%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LHLIGLLS GGVHS  + +  ++K A ++G KR+ LH   DGRD    S+   ++  +K L +L        IAS  GR Y  MDR +N WD V++ ++A V   A   + SA+EA+++   +  +++  +P    + ++G  V  + D D+V+  NFRADR   ++ A   E FD F R +   I +  + +YD +LK  V
Sbjct:  110 LHLIGLLSPGGVHSHEEHIFEMIKIAKQKGIKRLYLHAFLDGRDTPPRSAEKSIKKADKLLQDLN----LGYIASVCGR-YYAMDR-DNRWDRVEKAYNAIVNANADFIYDSALEALEQSYARDQSDEFVIP--TCIKKDGHLV-KVQDNDSVIFMNFRADRAREISHAFTDESFDHFPRKKHLNINFTTLTEYDSKLKCAV 302          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_FRAT1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=gpmI PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.530e-23
Identity = 72/202 (35.64%), Postives = 112/202 (55.45%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LHLIGLLS GGVHS  + +  ++K A ++G KR+ LH   DGRD    S+   ++  +K L +L        IAS  GR Y  MDR +N WD V++ ++A V   A   + SA+EA+++   +  +++  +P    + ++G  V  + D D+V+  NFRADR   ++ A   E FD F R +   I +  + +YD +LK  V
Sbjct:  110 LHLIGLLSPGGVHSHEEHIFEMIKIAKQKGIKRLYLHAFLDGRDTPPRSAEKSIKKADKLLQDLN----LGYIASVCGR-YYAMDR-DNRWDRVEKAYNAIVNANADFIYDSALEALEQSYARDQSDEFVIP--TCIKKDGHLV-KVQDNDSVIFMNFRADRAREISHAFTDESFDHFPRKKHLNINFTTLTEYDSKLKCAV 302          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_VIBVU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio vulnificus GN=gpmI PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 5.917e-23
Identity = 71/202 (35.15%), Postives = 112/202 (55.45%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GL+S GGVHS  D +   ++ A+ERGA++I LH   DGRD    S+ G ++  +   A+L GKG   ++AS  GR Y  MDR +N+WD V+  +D     +A   + SAV  +    E+   ND+++    I  E G+    + DGDAV+  N+RADR   + +     DF  F+R  FP + +  + QY  ++ L +
Sbjct:  112 VHIMGLMSPGGVHSHEDHILAAVEMAAERGAEKIYLHCFLDGRDTPPRSAEGSLQRFQDLFAKL-GKG---RVASLVGR-YYAMDR-DNNWDRVQVAYDLLTQAKADFTYDSAVAGLAAAYER-GENDEFVKATEIKAE-GQESAAMQDGDAVIFMNYRADRARQITRTF-VADFAGFERAVFPAVNFVMLTQYAADIPLAI 304          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_VESOH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=gpmI PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.728e-23
Identity = 68/202 (33.66%), Postives = 106/202 (52.48%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLSDGGVHS  +Q+  +L+  S +G K + LHI TDGRD    S+  +++ +E  + EL       +I S  GR Y +MDR +N W  ++  ++    G+A    KSA+ A+ +L       D+++    I     KA   I  GD ++  N+RADR   +  A   EDF  F R  F   ++  + +Y  +  LPV
Sbjct:  113 IHIMGLLSDGGVHSHEEQIHAMLEMTSRQGCKNVYLHIFTDGRDCAQKSAKKYIKKLESKMKELN----TGEIVSLIGR-YFSMDR-DNRWSRIRYAYELIAKGKAKFLAKSALNAI-ELAYARGETDEFIQSTSI-----KAPTSIKKGDVLILMNYRADRARQITCAFTDEDFQGFSRGTFVPTQFVCLTEYKKDFNLPV 302          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_ECOL6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli O6 GN=gpmI PE=3 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 7.728e-23
Identity = 70/202 (34.65%), Postives = 113/202 (55.94%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  D +  +++ A+ERGA++I LH   DGRD    S+   ++  E+  A L GKG   ++AS  GR Y  MDR +N WD V++ +D   L +   +  + V  ++    + + ND+++   VI  E G+    + DGDA++  NFRADR   + +A    DFD F R +   + +  + +Y  ++K  V
Sbjct:  113 VHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAESSLKKFEEKFAAL-GKG---RVASIIGR-YYAMDR-DNRWDRVEKAYDLLTLAQGEFQADTTVAGLQAAYAR-DENDEFVKATVIRAE-GQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAADIKTAV 306          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_DESAP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Desulforudis audaxviator (strain MP104C) GN=gpmI PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.728e-23
Identity = 77/203 (37.93%), Postives = 111/203 (54.68%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKI-RYAGMLQYDGELKLPV 606
            LHL+GLLSDGGVHS +  L  LL+ A     + + +H   DGRDV   +++ +VE +E  L  L G G    +AS  GR Y  MDR +  W+   R + A V GE   +  SA +AV+K  E+    D+++ P VIV  +G+ V  + DGDA+V FNFR DR   + ++    +F  F+R   P    +  + QYD  +  PV
Sbjct:  112 LHLMGLLSDGGVHSHISHLFALLELAGRLDQRSVYVHAFLDGRDVPPANALEYVEALEDKLKTL-GYGA---VASVIGR-YYAMDR-DRRWERTARAYRAMVYGEG-LRASSARQAVEKGYER-GETDEFIQPTVIV-RDGRPVAQVRDGDALVFFNFRPDRARQITRSFTDAEFGGFERGPAPAFPDFVCLTQYDRTIVAPV 305          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_VIBFM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio fischeri (strain MJ11) GN=gpmI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.009e-22
Identity = 72/200 (36.00%), Postives = 112/200 (56.00%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKL 600
            +H++GL+S GGVHS  D +   ++ A+ RGA++I LH   DGRD    S+   ++  ++  A+L GKG   +IAS  GR Y  MDR +N+W+ V++ +D     +A   F +AVE ++    +   ND+++    I  E G+    IVDGDAV+  N+RADR   + +      FD F R  FP I +  + QY  ++ L
Sbjct:  112 VHIMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRDTPPRSAENSLKNFQELFAKL-GKG---RIASLVGR-YYAMDR-DNNWERVQKAYDLMTEAKAEFTFATAVEGLEAAYAR-EENDEFVQATEIKAE-GEESAAIVDGDAVIFMNYRADRARQITRTF-VPSFDGFTRNVFPAIDFVMLTQYAADIPL 302          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_VIBF1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=gpmI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.009e-22
Identity = 72/200 (36.00%), Postives = 112/200 (56.00%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKL 600
            +H++GL+S GGVHS  D +   ++ A+ RGA++I LH   DGRD    S+   ++  ++  A+L GKG   +IAS  GR Y  MDR +N+W+ V++ +D     +A   F +AVE ++    +   ND+++    I  E G+    IVDGDAV+  N+RADR   + +      FD F R  FP I +  + QY  ++ L
Sbjct:  112 VHIMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRDTPPRSAENSLKNFQELFAKL-GKG---RIASLVGR-YYAMDR-DNNWERVQKAYDLMTEAKAEFTFATAVEGLEAAYAR-EENDEFVQATEIKAE-GEESAAIVDGDAVIFMNYRADRARQITRTF-VPSFDGFTRNVFPAIDFVMLTQYAADIPL 302          
The following BLAST results are available for this feature:
BLAST of CF417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_FRATN4.530e-2335.642,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FRATH4.530e-2335.642,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FRATF4.530e-2335.642,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FRAT14.530e-2335.642,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBVU5.917e-2335.152,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VESOH7.728e-2333.662,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECOL67.728e-2334.652,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_DESAP7.728e-2337.932,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBFM1.009e-2236.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBF11.009e-2236.002,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-272 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417342 ID=CF417342; Name=CF417342; organism=Citrus sinensis; type=EST; length=625bp
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGC
GTAGGATTCGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAA
AGGTGTTGACGCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGA
TGGACCGTTATGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCC
CAAGTTCTTGGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGT
CAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCAT
TTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGT
GATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGC
TAAGGCCCTTGAATATGAAGATTTTGACNAATTTGATCGAGTTCGGTTCC
CTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTT
CCCGTCATTACCTTGTGTCTCCTCC
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