CF417342

Overview
NameCF417342
Unique NameCF417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_PARD8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=gpmI PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.009e-22
Identity = 77/201 (38.31%), Postives = 98/201 (48.76%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQ--PNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELK 597
            +H +GL+SDGGVHS L+ L  L   A E G  +  +H   DGRD    S  GF+E +E  L    GK     IAS  GR Y  MDR +  W+ VK  +D  V G    K K A   VK + E       D+++ P V V ENGK V  I +GD V+ FN+R DR   L   L  +D         P ++Y  M  YD   K
Sbjct:  110 IHFMGLVSDGGVHSSLEHLLKLTDIAKEYGISKAYVHCFMDGRDTDPKSGKGFIEELENHLKTTGGK-----IASIIGR-YYAMDR-DKRWERVKEAYDLLVEG----KGKQAECMVKAMEESYAEGVTDEFIKPIVHV-ENGKPVAVIEEGDVVIFFNYRNDRAKELTVVLTQQDMPEAGMHTIPGLQYFCMTPYDASFK 298          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_PROMT (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus (strain NATL2A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.318e-22
Identity = 73/202 (36.14%), Postives = 106/202 (52.48%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LH++GL SDGGVHS +  L  L++ A+ +G K + LH+ TDGRD    S+  ++ TIE   A+++  GV  +I+S  GR Y  MDR +N W+   + ++            SA E++ K   Q    D+++ P  +     K      DGD VV FNFR DR   L KAL+ +DFD F+R     I      QY+  L + V
Sbjct:  123 LHIMGLCSDGGVHSHIKHLCGLIEWAASKGLKNVSLHLFTDGRDTSAKSATKYINTIE---AKIKATGV-GEISSLCGR-YWAMDR-DNRWERTSKAYELLTDPRFAISKLSAAESINK-SYQEGITDEFIEPVRLSSSFLK------DGDGVVFFNFRPDRARQLVKALKLKDFDGFERKNKTDIDVLTFTQYESGLPVSV 311          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_VIBSL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio splendidus (strain LGP32) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.248e-22
Identity = 73/200 (36.50%), Postives = 112/200 (56.00%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKL 600
            +H++GL+S GGVHS  D +   ++ A+ RGA++I LH   DGRD    S+   +   ++  A+L GKG   ++AS  GR Y  MDR +N+WD V+  +D     +A   F +AV  ++    + + ND+++    I  E G+    IVDGDAV+  N+RADR   + +A    DFD F R  FP I +  + QY  ++ L
Sbjct:  112 VHIMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHAFLDGRDTPPRSAENTLARFQELFAKL-GKG---RVASLIGR-YYAMDR-DNNWDRVQESYDLLTQAKAEFTFDTAVAGLEAAYAR-DENDEFVKATEIKAE-GEESAVIVDGDAVIFMNYRADRAREITRAF-VPDFDGFARNVFPAIDFVMLTQYAADIPL 302          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_PROM1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus (strain NATL1A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.248e-22
Identity = 73/202 (36.14%), Postives = 107/202 (52.97%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LH++GL SDGGVHS ++ L  L++ A+ +G K + LH+ TDGRD    S+  ++ TIE   A+++  GV  +I+S  GR Y  MDR +N W+   + ++            SA E++ K   Q    D+++ P  +     K      DGD VV FNFR DR   L KAL+ +DFD F+R     I      QY+  L + V
Sbjct:  123 LHIMGLCSDGGVHSHINHLCGLIEWAASKGLKSVSLHLFTDGRDTSAKSANKYINTIE---AKIKSTGV-GEISSLCGR-YWAMDR-DNRWERTSKAYELLTDPRFALSKLSAAESINK-SYQEGITDEFIEPVRLSSSFLK------DGDGVVFFNFRPDRARQLVKALKLKDFDGFERKNRADIDVLTFTQYESGLPVSV 311          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_FLAJ1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.248e-22
Identity = 69/198 (34.85%), Postives = 104/198 (52.53%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLG---EAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYD 585
            +H +GL+SDGGVHS    L+ L+  + E G  ++ +H  TDGRDV   S   ++  ++  +     K    +IAS  GR Y  MDR +  W+ VK  +D  V G    + +   S +E+ +K     +  D+++ P VIVDEN K +  IV+GD V+ FNFR DR   L +AL   DF   +  +   + Y  +  YD
Sbjct:  110 VHFLGLVSDGGVHSHTSHLRGLIDASQEYGLDQVYVHAFTDGRDVDPKSGAKYIHDLQDYI-----KDTPVKIASIVGRYYA-MDR-DKRWERVKLAYDLVVNGVGTPSTNPVSSVLESYEK-----DVTDEFIEPVVIVDENAKPLATIVEGDVVIFFNFRTDRGRELTEALSQHDFHEQNMHKL-NLYYVTLTNYD 294          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_FLAPJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=gpmI PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.936e-22
Identity = 69/201 (34.33%), Postives = 103/201 (51.24%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLRE--QPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELK 597
            +H +GLLSDGGVHS    L+ LL  A   G K+  +H  TDGRDV   S++  +E + K +         A++AS  GR Y  MDR +  W+ +K  +D  V G    K K + +AV  +    Q N  D+++ P ++ D+N   +  I + D V+ FNFR DR   L +AL  +DF   +  +   + Y  +  YD   K
Sbjct:  110 IHFLGLLSDGGVHSHTSHLRGLLDAAQNFGLKKTFIHAFTDGRDVDPKSAIATIENLNKYI-----HNTPAKLASVIGR-YYAMDR-DKRWERIKLAYDLLVNG----KGKPSQDAVLSISNSYQNNITDEFIEPIIMTDDNNNPIATIQEDDVVIFFNFRTDRGRELTEALSQQDFHEQNMHKL-NLYYVTLTNYDETYK 298          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SHEFN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella frigidimarina (strain NCIMB 400) GN=gpmI PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.835e-22
Identity = 68/202 (33.66%), Postives = 107/202 (52.97%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  + ++ + + A ERGA ++ LH   DGRD    S+   +   ++  A L G G  A I    GR Y  MDR +N WD V + ++     +    + SA EA++    + + ND+++    IVD  G+A   + D D+++  NFRADR   + +     DFD F R + PKI +  +  Y  ++  PV
Sbjct:  112 VHIMGLLSAGGVHSHEEHIEAMCRMAVERGATKVYLHAFLDGRDTPPRSAKNSLVHFDELFASL-GHGRTASII---GR-YFAMDR-DNRWDRVSQAYELITEAKGKFTYASAPEALEAAYAR-DENDEFVAASAIVDAQGEA-AVLSDNDSLIFMNFRADRARQITRTFVNPDFDGFKRNKTPKINFVMLTDYAADINAPV 305          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_PSESM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas syringae pv. tomato GN=gpmI PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.542e-22
Identity = 75/201 (37.31%), Postives = 105/201 (52.24%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLP 603
            +H++GLLSDGGVHS  D L  + + A  RGA +I LH   DGRD    S+   +E +++  A L GKG   +IA+  GR Y  MDR +N WD V   ++  V   A     + V  ++    + + ND+    FV     G+    + DGDAVV  NFRADR   L +    +DF  F+R R PK+ Y  + QY   +  P
Sbjct:  113 VHIMGLLSDGGVHSHQDHLVAMAELAVRRGADKIYLHAFLDGRDTPPRSAKKSLELMDETFARL-GKG---RIATIIGR-YFAMDR-DNRWDRVSTAYNLIVDSSAEFHAATGVAGLEAAYAR-DENDE----FVKATRIGEPAN-VEDGDAVVFMNFRADRARELTRVFVEDDFKDFERARQPKVNYVMLTQYAASIPAP 301          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SERP5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Serratia proteamaculans (strain 568) GN=gpmI PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.544e-22
Identity = 69/202 (34.16%), Postives = 110/202 (54.46%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKI-RYAGMLQYDGELKLP 603
            +H++GLLS GGVHS  D +  +++ AS+RGAK + LH   DGRD    S+   ++      A+L G G   +IAS  GR Y  MDR +N WD V+  +D     +  +   +AV A++   E+   ND+++ P  ++   G+A   + DGDA++  NFRADR   + ++    DFD F R +      +  + +Y  ++K P
Sbjct:  113 VHIMGLLSPGGVHSHEDHILAMIELASQRGAKAVYLHAFLDGRDTPPRSAEASLQRFSDAFAKL-GTG---RIASLIGR-YYAMDR-DNRWDRVQLAYDLLTQAKGDYVTDNAVGALQAAYER-GENDEFVKP-TVLQAAGEAKAELHDGDALIFMNFRADRARQIVRSFVNADFDGFPRAKIINFGDFVMLTEYAADIKAP 306          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_PELCD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.544e-22
Identity = 68/203 (33.50%), Postives = 107/203 (52.71%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIR-YAGMLQYDGELKLPV 606
            LHL+GLLSDGGVHS ++ L  L++ A   G +++ +H   DGRD    S  G++  +E  L ++ G G   ++A+  GR Y  MDR +N W+ V++ + A   G     F+S+  A+     Q   ++   P FV     G+    + DGD ++ FNFRADR   + +     DF  F R + P++  Y  + +YD    LP+
Sbjct:  114 LHLMGLLSDGGVHSHMEHLYALVEMARRAGVEQVCIHAFMDGRDTPPQSGAGYLAQLEDKLQDI-GLG---RVATVIGR-YWAMDR-DNRWERVEKAYRAMTEGVGT-SFESSAAAIADAYAQGQTDEFVEPRFV----GGEKPCTVDDGDGMIFFNFRADRAREITRTFTSSDFSGFSREKTPRLAGYVCLTEYDASFGLPM 305          
The following BLAST results are available for this feature:
BLAST of CF417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_PARD81.009e-2238.312,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROMT1.318e-2236.142,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBSL2.248e-2236.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROM12.248e-2236.142,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FLAJ12.248e-2234.852,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FLAPJ2.936e-2234.332,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEFN3.835e-2233.662,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSESM6.542e-2237.312,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SERP58.544e-2234.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PELCD8.544e-2233.502,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-272 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417342 ID=CF417342; Name=CF417342; organism=Citrus sinensis; type=EST; length=625bp
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGC
GTAGGATTCGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAA
AGGTGTTGACGCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGA
TGGACCGTTATGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCC
CAAGTTCTTGGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGT
CAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCAT
TTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGT
GATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGC
TAAGGCCCTTGAATATGAAGATTTTGACNAATTTGATCGAGTTCGGTTCC
CTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTT
CCCGTCATTACCTTGTGTCTCCTCC
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