CF417342

Overview
NameCF417342
Unique NameCF417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_CHRSD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=gpmI PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.544e-22
Identity = 76/205 (37.07%), Postives = 108/205 (52.68%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGML---QYDGELKLPV 606
            +HL+GLLS GGVHS  D +  +   A+ERGAK + LH   DGRD    S+   +E     LAEL G   +A +AS  GR Y  MDR +N WD V++ +   V GE      SA EA      +    D+++     +  +G+ V  + DGDA +  NFRADR   L +A   +DF  F R   PK+ + G++   +Y  ++  PV
Sbjct:  117 VHLLGLLSPGGVHSHEDHILAVAALAAERGAKHVYLHAFLDGRDTAPKSARASLERANARLAELFGAD-NAYVASIVGR-YYAMDR-DNRWDRVEQAYRVIVEGEGSQVATSA-EAGLDAAYERGETDEFVAA-TSIRPHGEPV-RMADGDAALFLNFRADRARELTRAFVEDDFSGFTRQARPKLAHEGLVMLTEYAADIPAPV 315          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_LAWIP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=gpmI PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.116e-21
Identity = 82/207 (39.61%), Postives = 105/207 (50.72%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNAN---DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIR-YAGMLQYDGELKLPVI 609
            LHL+GLLS+GGVHS +  L+ LL  A E   + I LH   DGRD      + F++ I   L      GV   I S  GR Y  MDR +  W+ +K  WDA V G   H     VE   K  EQ  A+   D+++ P V+      +V  + D DAV+ FNFRADR   L  A    DF+ FDR R P +   A M  YD E  +PV+
Sbjct:  111 LHLLGLLSNGGVHSHIRHLEALLSIAKEHNIQVI-LHPFMDGRDTGPKDGLKFMKEIVSFLTST-SSGV---IGSFCGRFYA-MDR-DKRWERIKLAWDAIVHGVGLH-----VEDSVKALEQAYASGETDEFIKPRVM---GNSSVNCVQDNDAVLFFNFRADRARELVSAFILPDFNGFDRGRVPHLSGIATMTMYDKEFNIPVL 302          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SYNJA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. (strain JA-3-3Ab) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.457e-21
Identity = 73/202 (36.14%), Postives = 106/202 (52.48%), Query Frame = 1
Query:    4 HLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPVI 609
            H IGL S+GGVHS +D L  LLK A++ G     +H +TDGRD L       +  +EK+L  L G GV   IA+  GR Y  MDR +  W+  ++ ++  +  + P   +SA E ++    Q +  D+++PP  +      A G +  GDAV+ FNFR DR   L +A    DF  F R   P + +  M QYD  L + V+
Sbjct:  115 HFIGLCSEGGVHSHIDHLYGLLKLAAQAGIPAY-VHAITDGRDTLPRDGARVLAALEKELQWL-GSGV---IATLSGRYYA-MDR-DRRWERTQKAYEI-LTEDGPGCGRSAAEVMEDFYAQ-DITDEFIPPTRL------APGAVQSGDAVIFFNFRPDRARQLTQAFVCPDFSGFQRRLIPDLTFITMTQYDPTLPVQVL 301          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_PSEF5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.457e-21
Identity = 74/202 (36.63%), Postives = 109/202 (53.96%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIR-YAGMLQYDGELKLP 603
            +H++GLLSDGGVHS  D L  + + A +RGA++I LH   DGRD    S+   +E +++    L GKG   +IAS  GR Y  MDR +N WD V + ++  V G+      +A E ++    +  +++     FV     G+ V  + DGDAVV  NFRADR   L +    +DF  F+R R PK+  +  + QY   +  P
Sbjct:  113 VHILGLLSDGGVHSHQDHLIAMAELAFKRGAEKIYLHAFLDGRDTPPKSAQSSIELLDETFKTL-GKG---RIASLIGR-YFAMDR-DNRWDRVAQAYNLIVDGQGQFNAATAQEGLQAAYAREESDE-----FVKATTIGEPV-KVEDGDAVVFMNFRADRARELTRVFVEDDFKDFERPRQPKLAGFVMLTQYAASIPAP 302          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_VIBCM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.903e-21
Identity = 69/200 (34.50%), Postives = 110/200 (55.00%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKL 600
            +HL+GL+S GGVHS  D +   ++ A+ RGA++I LH   DGRD    S+   ++  +   A+L GKG   +IAS  GR Y  MDR +N+WD V++ +D   L +    + SAVEA++    +   ND+++     +   G+    + DGDA++  N+RADR   + +     DF  F R  FP + +  + QY  ++ L
Sbjct:  112 VHLMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRDTPPRSAEASLKRFQDLFAKL-GKG---RIASIVGR-YYAMDR-DNNWDRVEKAYDLLTLAQGEFTYDSAVEALQAAYAR-EENDEFVKA-TEIRAAGQESAAMQDGDALLFMNYRADRARQITRTF-VPDFAGFSRKAFPALDFVMLTQYAADIPL 302          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_VIBCH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio cholerae GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.903e-21
Identity = 69/200 (34.50%), Postives = 110/200 (55.00%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKL 600
            +HL+GL+S GGVHS  D +   ++ A+ RGA++I LH   DGRD    S+   ++  +   A+L GKG   +IAS  GR Y  MDR +N+WD V++ +D   L +    + SAVEA++    +   ND+++     +   G+    + DGDA++  N+RADR   + +     DF  F R  FP + +  + QY  ++ L
Sbjct:  112 VHLMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRDTPPRSAEASLKRFQDLFAKL-GKG---RIASIVGR-YYAMDR-DNNWDRVEKAYDLLTLAQGEFTYDSAVEALQAAYAR-EENDEFVKA-TEIRAAGQESAAMQDGDALLFMNYRADRARQITRTF-VPDFAGFSRKAFPALDFVMLTQYAADIPL 302          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_VIBC3 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.903e-21
Identity = 69/200 (34.50%), Postives = 110/200 (55.00%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKL 600
            +HL+GL+S GGVHS  D +   ++ A+ RGA++I LH   DGRD    S+   ++  +   A+L GKG   +IAS  GR Y  MDR +N+WD V++ +D   L +    + SAVEA++    +   ND+++     +   G+    + DGDA++  N+RADR   + +     DF  F R  FP + +  + QY  ++ L
Sbjct:  112 VHLMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRDTPPRSAEASLKRFQDLFAKL-GKG---RIASIVGR-YYAMDR-DNNWDRVEKAYDLLTLAQGEFTYDSAVEALQAAYAR-EENDEFVKA-TEIRAAGQESAAMQDGDALLFMNYRADRARQITRTF-VPDFAGFSRKAFPALDFVMLTQYAADIPL 302          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_PSEA6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.903e-21
Identity = 67/180 (37.22%), Postives = 100/180 (55.56%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR 540
            +H++GLLS GGVHS  D +  ++K A++RGAK+I LH   DGRD    S+   +E  +K   EL G G  A +    GR Y  MDR ++ WD V++ +     GE       A+E ++    + + ND+++ P VI D       PI DGDA+V  NFRADR   +++    +DF  F++
Sbjct:  113 VHIMGLLSPGGVHSHQDHIFAMIKLAAKRGAKKIFLHAFLDGRDTPPRSAKAPLEAADKVFEEL-GVGKTATLV---GR-YYAMDR-DSRWDRVEKAYKVIAKGEGAFNVACAIEGLENSYSR-DENDEFMQPTVIGD-----AAPIEDGDALVFMNFRADRAREISRPFVEKDFSDFEK 280          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_ENTS8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.903e-21
Identity = 69/200 (34.50%), Postives = 112/200 (56.00%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIR-YAGMLQYDGELK 597
            +H++GL S GGVHS  D +  +++ A+ RGA++I LH   DGRD    S+   +E      AE+ GKG   +IAS  GR Y  MDR +N WD V++ +D   L +  ++  +AV  ++    + + ND+++   VI  E G+A   + DGDA++  NFRADR   + +A    DF+ F R +  K   +  + +Y  +++
Sbjct:  113 VHIMGLASPGGVHSHEDHILAMIELAAARGAEKIYLHAFLDGRDTPPRSAKASLEKFAAKFAEV-GKG---RIASIIGR-YFAMDR-DNRWDRVEQAYDLLTLAKGEYEAPNAVAGLEAAYAR-DENDEFVKATVIRGE-GEASAAMEDGDALIFMNFRADRARQITRAFVNRDFEGFSRKKVVKFADFVMLTEYAADIR 304          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SYMTH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Symbiobacterium thermophilum GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.486e-21
Identity = 72/196 (36.73%), Postives = 106/196 (54.08%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVR-FPKIRYAGMLQYD 585
            LHL+GL+SDGGVHS +D L  L+  A     +R+ +H   DGRDV   S++ ++E +E   A+L+  G+ A IA+  GR Y  MDR +  WD  ++ + A   G   H   S  EAV++   +    D+++ P VI   +G+    + +GD V+ FNFR DR   L +AL    FD F R   +  +    M QYD
Sbjct:  113 LHLMGLVSDGGVHSHIDHLLALIDLAKRENVERVYVHAFLDGRDVPPQSALPYLERVE---AKLKETGIGA-IATISGR-YYAMDR-DKRWDRTEKAFLAITQG-IGHTAGSVAEAVERAYAR-GETDEFVQPTVIEGVDGR----VREGDGVIFFNFRPDRARQLVRALHETAFDGFKRPEGYRPVELVTMTQYD 296          
The following BLAST results are available for this feature:
BLAST of CF417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_CHRSD8.544e-2237.072,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LAWIP1.116e-2139.612,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNJA1.457e-2136.142,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEF51.457e-2136.632,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBCM1.903e-2134.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBCH1.903e-2134.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBC31.903e-2134.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEA61.903e-2137.222,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ENTS81.903e-2134.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYMTH2.486e-2136.732,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-272 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417342 ID=CF417342; Name=CF417342; organism=Citrus sinensis; type=EST; length=625bp
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGC
GTAGGATTCGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAA
AGGTGTTGACGCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGA
TGGACCGTTATGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCC
CAAGTTCTTGGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGT
CAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCAT
TTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGT
GATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGC
TAAGGCCCTTGAATATGAAGATTTTGACNAATTTGATCGAGTTCGGTTCC
CTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTT
CCCGTCATTACCTTGTGTCTCCTCC
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