CF417342

Overview
NameCF417342
Unique NameCF417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_PSE14 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.486e-21
Identity = 73/201 (36.32%), Postives = 103/201 (51.24%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLP 603
            +H++GLLSDGGVHS    L  + + A +RGA++I LH   DGRD    S+   +E ++   A L GKG  A I    GR Y  MDR +N WD V   ++  V   A     S V  ++    + + ND+++    I +        + DGDAVV  NFRADR   L +    +DF  F+R R PK+ Y  + QY   +  P
Sbjct:  113 VHIMGLLSDGGVHSHQGHLVAMAELAVKRGAEKIYLHAFLDGRDTPPRSAKKSLELMDATFARL-GKGRTATII---GR-YFAMDR-DNRWDRVSTAYNLIVDSTAEFHADSGVAGLEAAYAR-DENDEFVKATRIGEP-----ARVEDGDAVVFMNFRADRARELTRVFVEDDFKDFERARQPKVNYVMLTQYAASIPAP 301          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_AERS4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Aeromonas salmonicida (strain A449) GN=gpmI PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.486e-21
Identity = 68/199 (34.17%), Postives = 107/199 (53.77%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELK 597
            +H++GL+S GGVHS  + +  +++ A++RGA++I  H   DGRDV   S+   +E  +   A L GKG   + AS  GR Y  MDR +N WD V++ +D    G+      SA EA+     + + ND+++    I      A  P+ DGDA++  NFRADR   + +A    DF  F R   P + +  + +Y  ++K
Sbjct:  113 VHIMGLMSPGGVHSHEEHIMGMIEMAAKRGAEQIYFHAFLDGRDVPPRSAQSSIEQFDALFARL-GKG---RFASMIGR-YFAMDR-DNRWDRVQQAYDLMTQGKGEFTADSASEALAAAYAR-DENDEFVKATRI-----GAAAPMQDGDALIFMNFRADRAREITRAFVDSDFTGFARAATPALNFVMLTEYAADIK 299          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_STAHJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.247e-21
Identity = 70/203 (34.48%), Postives = 108/203 (53.20%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPVI 609
            LH+ GLLSDGGVHS    L  LL+ A ++G  ++ +H   DGRDV   S++ ++E  E   A+ +  GV  + AS  GR Y  MDR +  WD  ++ ++A    E P  + SA E V +     +  D+++ PF++  +N      I DGDAV+ FNFR DR   L++    + FD F   +   + YA   +Y+  +   V+
Sbjct:  111 LHVFGLLSDGGVHSHYQHLFALLELAKQKGLDKVYVHAFLDGRDVDQKSALKYIEETE---AKFKSLGV-GEFASISGR-YYAMDR-DKRWDREQKAYNAIRNFEGP-AYASAKEGV-EANYANDLTDEFVEPFIVEGQN----NGINDGDAVIFFNFRPDRAAQLSEVFTNKAFDGFKVEQVKDLFYATFTKYNDNVDTEVV 301          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_PSEAE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas aeruginosa GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.247e-21
Identity = 74/202 (36.63%), Postives = 111/202 (54.95%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIR-YAGMLQYDGELKLP 603
            +H++GLLS GGVHS  D L  + + A+ RGA +I LH   DGRD    S+   +E ++   A L GKG   +IAS  GR Y  MDR +N WD V+  ++  V G+A     S+V A++    +   +D+++    +V    +AV  + DGDAV+  NFRADR   L++A     F+ F R R P++  +  + QY   +  P
Sbjct:  113 VHILGLLSPGGVHSHEDHLVAMAQMAARRGAGKIYLHAFLDGRDTPPKSAQPSLERLDATFAGL-GKG---RIASIIGR-YFAMDR-DNRWDRVQAAYELIVDGKAEFTADSSVAALEAAYAR-GESDEFVKATAVVPAGAEAV-RVEDGDAVIFMNFRADRARELSRAFVEPAFNEFPRERAPQLAGFVMLTQYAASIPAP 306          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_CHLSY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.247e-21
Identity = 71/184 (38.59%), Postives = 104/184 (56.52%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQV--LGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVR 546
            LHL+GL   GGVH+  D L  LL+ A     +R+ LH+  DGRDVL  S++GF++T+E  +A L G G    IA+  GR Y  MDR +  W+   R + A V  +GE     ++A+EA        + +D+++ P VIV  +G+    + DGDAV+  NFR DR   L +A  + D D  +R+R
Sbjct:  112 LHLMGLFGPGGVHAHEDHLHALLELAHRHHLQRVYLHLFLDGRDVLPRSALGFLDTLEGVIARL-GVGT---IATVSGR-YYAMDR-DKRWERTGRAYAALVDGVGEKAPSARAAIEA----SYARDVSDEFVLPTVIVTASGEPTATVRDGDAVIFTNFRPDRGRQLTRA--FVDPDLNERIR 283          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_CHLAA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.247e-21
Identity = 71/184 (38.59%), Postives = 104/184 (56.52%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQV--LGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVR 546
            LHL+GL   GGVH+  D L  LL+ A     +R+ LH+  DGRDVL  S++GF++T+E  +A L G G    IA+  GR Y  MDR +  W+   R + A V  +GE     ++A+EA        + +D+++ P VIV  +G+    + DGDAV+  NFR DR   L +A  + D D  +R+R
Sbjct:  112 LHLMGLFGPGGVHAHEDHLHALLELAHRHHLQRVYLHLFLDGRDVLPRSALGFLDTLEGVIARL-GVGT---IATVSGR-YYAMDR-DKRWERTGRAYAALVDGVGEKAPSARAAIEA----SYARDVSDEFVLPTVIVTASGEPTATVRDGDAVIFTNFRPDRGRQLTRA--FVDPDLNERIR 283          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SULDN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=gpmI PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.240e-21
Identity = 70/208 (33.65%), Postives = 111/208 (53.37%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEA-----PHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPVI 609
            LHLIGL+SDGGVHS +D    +   A++ G K + LH++TDGRDV   S+  ++  +EK L      G + +IA+  GR Y +MDR +N W+ V++G++A V  E      P ++  A  A        N  D+++ P      +G +     D D+V+  NFR+DRM  +  A+   +F  F++    K+  A + +YD     PV+
Sbjct:  106 LHLIGLMSDGGVHSHIDHFMGIADIAAKEG-KEVFLHLITDGRDVSPTSAKKYLAQVEKHL------GANIKIATVSGRFY-SMDR-DNRWERVQKGYEAIVKAEPKTTLNPSEYIDASYA-------KNETDEFIEPIAFDGYDGMS-----DNDSVLMINFRSDRMREITTAIGESNFSSFEKSDI-KLHVATITEYDKNFSYPVL 291          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_VIBHB (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=gpmI PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.538e-21
Identity = 69/202 (34.16%), Postives = 111/202 (54.95%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GL+S GGVHS  D +   ++ A+ RGA++I LH   DGRD    S+   ++  +   A+L GKG   ++AS  GR Y  MDR +N+WD V+  +D     +A    ++AV  ++    +   ND+++    I  E G+    + DGDAV+  N+RADR   + +A     FD F+R  FP I +  + QY  ++ L +
Sbjct:  112 VHIMGLMSPGGVHSHEDHIYAAVEMAAARGAEKIYLHCFLDGRDTPPRSAENSLQRFQDLFAKL-GKG---RVASLVGR-YYAMDR-DNNWDRVQVAYDLLTQAKAEFTAETAVAGLEAAYAR-EENDEFVKATAIKAE-GQEDAIMQDGDAVIFMNYRADRARQITRAF-VPAFDGFERAVFPAINFVMLTQYAADIPLAI 304          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SYNJB (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. GN=gpmI PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.233e-21
Identity = 70/202 (34.65%), Postives = 106/202 (52.48%), Query Frame = 1
Query:    4 HLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPVI 609
            H +GL S+GGVHS +D L  LLK A++       +H +TDGRD L       +  +EK+L  L G GV   IA+  GR Y  MDR +  W+  ++ ++     + P + +SA E ++    Q +  D+++PP  +      A G +  GDAV+ FNFR DR   L +A    DF  F R   P + +  M QY+ +L + V+
Sbjct:  115 HFVGLCSEGGVHSHIDHLYGLLKLAAQAEIPAY-VHAITDGRDTLPRDGARVLAALEKELQWL-GNGV---IATLSGRYYA-MDR-DRRWERTQKAYEIMTQ-DGPGRGQSAAEVMEAFYAQ-DLTDEFIPPTRL------APGAVQPGDAVLFFNFRPDRARQLTQAFVCPDFSGFQRPLLPALTFITMTQYEADLPVQVL 301          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_STAES (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gpmI PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.233e-21
Identity = 69/203 (33.99%), Postives = 107/203 (52.71%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPVI 609
            LH+ GLLSDGGVHS    L  +L+ A ++G  ++ +H   DGRDV   S++ ++E  E    EL   GV  Q AS  GR Y  MDR +  WD  +R ++A    E P  F SA   V +   + +  D+++ PF++  +N      + DGDAV+ +NFR DR   L++    + FD F   +   + YA   +Y+  +   ++
Sbjct:  111 LHVFGLLSDGGVHSHYKHLFAILELAKKQGIDKVYVHAFLDGRDVDQKSALKYIEETEDKFKEL---GV-GQFASVSGR-YYAMDR-DKRWDREERAYNAIRNFEGP-TFTSAKAGV-EANYKNDVTDEFVEPFIVEGQN----DGVNDGDAVIFYNFRPDRAAQLSEIFTNKAFDGFKVEQVDNLFYATFTKYNDNVDAEIV 301          
The following BLAST results are available for this feature:
BLAST of CF417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_PSE142.486e-2136.322,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_AERS42.486e-2134.172,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_STAHJ3.247e-2134.482,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEAE3.247e-2136.632,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHLSY3.247e-2138.592,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHLAA3.247e-2138.592,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SULDN4.240e-2133.652,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_VIBHB5.538e-2134.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNJB7.233e-2134.652,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_STAES7.233e-2133.992,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-272 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417342 ID=CF417342; Name=CF417342; organism=Citrus sinensis; type=EST; length=625bp
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGC
GTAGGATTCGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAA
AGGTGTTGACGCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGA
TGGACCGTTATGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCC
CAAGTTCTTGGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGT
CAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCAT
TTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGT
GATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGC
TAAGGCCCTTGAATATGAAGATTTTGACNAATTTGATCGAGTTCGGTTCC
CTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTT
CCCGTCATTACCTTGTGTCTCCTCC
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