CF417342

Overview
NameCF417342
Unique NameCF417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_STAS1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.123e-20
Identity = 66/203 (32.51%), Postives = 109/203 (53.69%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPVI 609
            LH+ GLLSDGGVHS    L  LL  A ++G +++ +H   DGRDV   S++ ++E  E    EL   G+  Q AS  GR Y  MDR +  WD  ++ ++A +       F+SA   V+   ++ +  D+++ PF++ D+N      + DGDAV+ +NFR DR   L++    + F+ F   +   + YA   +Y+  +   ++
Sbjct:  111 LHVFGLLSDGGVHSHYKHLFALLDLAKKQGLEKVYVHAFLDGRDVDQKSALKYIEETEAKFKEL---GI-GQFASVSGR-YYAMDR-DKRWDREEKAYNA-IRNFGGTTFESAKAGVEANYDK-DLTDEFVEPFIVQDQN----EGVNDGDAVIFYNFRPDRAGQLSEIFTDKAFEGFKVEQINDLFYATFTKYNDNVNAEIV 301          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_DESVH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.123e-20
Identity = 78/205 (38.05%), Postives = 101/205 (49.27%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGE-APHKFK-SAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIR-YAGMLQYDGELKLPV 606
            +HL+GLLSDGGVHS +  ++ L   A + G + + +H   DGRD    S VG+V+ +   L   R      +I S  GR Y  MDR +  WD     W     GE AP      AVEA     E     D+++ P V+V E G  +G I DGD V  FNFRADR   L+       F+  DR   P +  +A M  YD  L LPV
Sbjct:  111 VHLMGLLSDGGVHSHIAHVEALALAARDAGVEVV-VHAFLDGRDTAPTSGVGYVKRLASFLESNRA----GRIGSLVGRYYA-MDR-DKRWDRNLLAWAMLTRGEGAPADDPVGAVEAAYAAGE----TDEFVKPRVVV-EGGSPIGTIRDGDGVFFFNFRADRARQLSHMFVDGTFEHGDRGHVPSLAGFATMTSYDPALGLPV 303          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_ACHLI (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Acholeplasma laidlawii (strain PG-8A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.123e-20
Identity = 62/171 (36.26%), Postives = 95/171 (55.56%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGA-KRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKAL 510
            LH++GL+SDGGVH+++     L   A ++    R  LH+ TDGRD    S  GFV+T+               +A+  GR Y  MDR +N+WD V+  +DA  LG+ PH F SA++ ++    +    D+++ PF++ D+     G I + DAV+  NFR DR + +A AL
Sbjct:  111 LHIMGLVSDGGVHAQMGHYLALYDFAKQQNILDRTYLHVFTDGRDTPQESGYGFVKTL---------VDYGFNVATVSGRFY-AMDR-DNNWDRVQLAFDAMTLGDGPH-FNSALDGIES-SYKSGIQDEFIKPFIVNDK-----GLIENDDAVIFANFRPDRAIRIATAL 263          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_PROMA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus GN=gpmI PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.997e-20
Identity = 65/203 (32.02%), Postives = 109/203 (53.69%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPVI 609
            LHL+GL SDGGVHS ++ L  LL+ A  +G +++ +H  TDGRD    SS+ +++ I K+  E+ G G   ++A+  GR Y +MDR +N W+ +++ ++       P    S+ E +    +  +  D++L P  +     K      DGD ++ FNFR DR   L K++    F  F R   P++    + QY+ +L + V+
Sbjct:  123 LHLVGLCSDGGVHSHINHLCGLLEWAKNKGIQKVAVHAFTDGRDTPAKSSLQYLKII-KEKFEVLGIG---ELATLCGR-YWSMDR-DNRWERIEKAYELLTNPNYPLSELSSDEIITNSYDS-SITDEFLEPIRLTPSYLK------DGDGLIMFNFRPDRARQLIKSITLPSFSEFKRKYQPQLNVVTLTQYEMDLPVSVV 312          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SYNPX (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Synechococcus sp. (strain WH8102) GN=gpmI PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.044e-19
Identity = 70/204 (34.31%), Postives = 108/204 (52.94%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNA--NDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LHL+GL SDGGVHS ++ L  L+  A+  G K++ +H +TDGRD    S++G +  +++ + E    GV   +AS  GR Y  MDR +  WD  ++ +D   L   P +  S     + L E   A   D++L P  + D+       + DGD+V+ FNFR DR   + + L  +DFD F+R   PK+      Q + +L + V
Sbjct:  123 LHLLGLCSDGGVHSHVNHLCGLIHWAAAAGIKKVAVHAITDGRDTPTQSAMGSITLVQRAMEE---AGV-GHLASLCGR-YWAMDR-DKRWDRTEKAYD---LYTDPTRSISDQSPQQLLAESYAAGITDEFLKPVRLSDD------VMQDGDSVLVFNFRPDRARQIVQTLCLDDFDGFERRTTPKLDVVTFTQVEQDLPVSV 311          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_STAAN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Staphylococcus aureus (strain N315) GN=gpmI PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.364e-19
Identity = 64/203 (31.53%), Postives = 108/203 (53.20%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPVI 609
            LH+ GLLSDGGVHS    L  LL+ A ++G +++ +H   DGRDV   S++ ++E  E    EL   G+  Q AS  GR Y  MDR +  W+  ++ ++A    +AP  + +A E V+    +    D+++ PF++ ++N      + DGD V+ +NFR DR   L++      F+ F   +   + YA   +Y+  +   ++
Sbjct:  111 LHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIEETEAKFNEL---GI-GQFASVSGR-YYAMDR-DKRWEREEKAYNAIRNFDAP-TYATAKEGVEASYNE-GLTDEFVVPFIVENQN----DGVNDGDTVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNIDAAIV 301          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_STAAM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gpmI PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.364e-19
Identity = 64/203 (31.53%), Postives = 108/203 (53.20%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPVI 609
            LH+ GLLSDGGVHS    L  LL+ A ++G +++ +H   DGRDV   S++ ++E  E    EL   G+  Q AS  GR Y  MDR +  W+  ++ ++A    +AP  + +A E V+    +    D+++ PF++ ++N      + DGD V+ +NFR DR   L++      F+ F   +   + YA   +Y+  +   ++
Sbjct:  111 LHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIEETEAKFNEL---GI-GQFASVSGR-YYAMDR-DKRWEREEKAYNAIRNFDAP-TYATAKEGVEASYNE-GLTDEFVVPFIVENQN----DGVNDGDTVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNIDAAIV 301          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_RUTMC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=gpmI PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.364e-19
Identity = 65/202 (32.18%), Postives = 107/202 (52.97%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLSDGGVHS  +Q+  +L+   ++G K + LH+ TDGRD    S+  +++  E+ +A L G G   +I S  GR Y +MDR +N W  ++  ++    G+A    +SA+ AV +L       D+++    I     K    I  GD ++  N+RADR   + +A   E+   F R  F   ++  + +Y  +  LPV
Sbjct:  113 VHIMGLLSDGGVHSHEEQIHAMLEMTHKQGCKNVYLHLFTDGRDCAQKSAEKYIQKFEEKMAIL-GTG---EIVSIIGR-YFSMDR-DNRWSRIRCAYELIAKGKAKFLAQSALHAV-ELAYARGETDEFIQSTSI-----KIPISIKKGDVLIFMNYRADRARQITRAFTDENLQGFSRGTFVPTQFICLTEYKKDFNLPV 302          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=gpmI PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.327e-19
Identity = 69/199 (34.67%), Postives = 103/199 (51.76%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRY-AGMLQYDGEL 594
            LH++GLLS GGVHS    L  LL   +++  + + LH+  DGRD    S++  ++ + ++LA    K   A I S  GR Y  MDR +  W+ V+  ++    G++  +F  A  A+     +   +D+++PP +I  E+      I DGDAV+ FNFRADR   L        F  F+R   PK+ Y   M QYD  L
Sbjct:  112 LHIMGLLSPGGVHSHEQHLFALLALCNQKKFRSVHLHLFLDGRDTPPQSALDSLKCLNEELA----KHPVATINSICGR-YYAMDR-DKRWERVEPVYNLLTQGKSERQFPDAETAI-HFYYKNKISDEFVPPTLIGKEHS-----IQDGDAVLFFNFRADRARQLTSTFLDPSFKGFERKTLPKLSYFVSMTQYDKNL 298          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila (strain Corby) GN=gpmI PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.327e-19
Identity = 69/199 (34.67%), Postives = 103/199 (51.76%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRY-AGMLQYDGEL 594
            LH++GLLS GGVHS    L  LL   +++  + + LH+  DGRD    S++  ++ + ++L     K   A I S  GR Y  MDR +  W+ V+  ++    G++ H+F  A  A+     +   +D+++PP +I  E+      I DGDAV+ FNFRADR   L        F  F+R   PK+ Y   M QYD  L
Sbjct:  112 LHIMGLLSPGGVHSHEQHLFALLALCNQKKFRSVHLHLFLDGRDTPPQSALDSLKCLNEELV----KHPVATINSICGR-YYAMDR-DKRWERVEPVYNLLTQGKSEHQFPDAETAI-HFYYKNKISDEFVPPTLIGKEHS-----IQDGDAVLFFNFRADRARQLTSTFLDPLFKGFERKTLPKLSYFVSMTQYDKNL 298          
The following BLAST results are available for this feature:
BLAST of CF417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_STAS16.123e-2032.512,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_DESVH6.123e-2038.052,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ACHLI6.123e-2036.262,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROMA7.997e-2032.022,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SYNPX1.044e-1934.312,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_STAAN1.364e-1931.532,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_STAAM1.364e-1931.532,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RUTMC1.364e-1932.182,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPH2.327e-1934.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPC2.327e-1934.672,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-272 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417342 ID=CF417342; Name=CF417342; organism=Citrus sinensis; type=EST; length=625bp
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGC
GTAGGATTCGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAA
AGGTGTTGACGCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGA
TGGACCGTTATGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCC
CAAGTTCTTGGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGT
CAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCAT
TTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGT
GATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGC
TAAGGCCCTTGAATATGAAGATTTTGACNAATTTGATCGAGTTCGGTTCC
CTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTT
CCCGTCATTACCTTGTGTCTCCTCC
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