CF417342

Overview
NameCF417342
Unique NameCF417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_HALMA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Haloarcula marismortui GN=gpmI PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.327e-19
Identity = 72/203 (35.47%), Postives = 99/203 (48.77%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKAL-EYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H +GL+SDGGVHS  D L  L++ A ERG   +  H  TDGRD        ++  +E  + E  G G    +A+  GR Y  MDR +N W+  +R +DA V  E  H    AV A  +   + +  D+++ P  + D  G     +  GDAVV FNFR+DR   L + L +    D       P  R   M QYD    LPV
Sbjct:  122 VHFMGLVSDGGVHSYQDHLHALIELAGERGTDAVS-HAFTDGRDTSPTGGEDYLADLEAHVEE-HGTG---HVATVCGR-YYAMDRDQN-WERTRRAYDAIVHREGDHHADEAVTAATESYAR-DTTDEFIEPTTVGDHAG-----LEAGDAVVFFNFRSDRARQLTRMLGDIRPEDWGSDTEPPDTRLVTMTQYDETFDLPV 311          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_BACFR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacteroides fragilis GN=gpmI PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.327e-19
Identity = 70/201 (34.83%), Postives = 94/201 (46.77%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLRE--QPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELK 597
            +H +GL SDGGVHS LD L  L   A E   +   +H   DGRD    S  GF+E +E   A+  GK     +AS  GR Y  MDR +  W+ VK  +D  V G      K A + V+ ++E       D+++ P V    N    G I +GD V+ FN+R DR   L   L  +D         P ++Y  M  YD   K
Sbjct:  110 VHFMGLTSDGGVHSSLDHLFKLCDIAKEYNIENTFVHCFMDGRDTDPKSGKGFIEQLEAHCAKSAGK-----VASIIGR-YYAMDR-DKRWERVKEAYDLLVNGIG----KKATDMVQAMQESYDEGVTDEFIKPIV----NAGVDGTIKEGDVVIFFNYRNDRAKELTVVLTQQDMPEAGMHTIPGLQYYCMTPYDASFK 295          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_BACFN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=gpmI PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.327e-19
Identity = 70/201 (34.83%), Postives = 94/201 (46.77%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLRE--QPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELK 597
            +H +GL SDGGVHS LD L  L   A E   +   +H   DGRD    S  GF+E +E   A+  GK     +AS  GR Y  MDR +  W+ VK  +D  V G      K A + V+ ++E       D+++ P V    N    G I +GD V+ FN+R DR   L   L  +D         P ++Y  M  YD   K
Sbjct:  110 VHFMGLTSDGGVHSSLDHLFKLCDIAKEYNIENTFVHCFMDGRDTDPKSGKGFIEQLEAHCAKSAGK-----VASIIGR-YYAMDR-DKRWERVKEAYDLLVNGIG----KKATDMVQAMQESYDEGVTDEFIKPIV----NAGVDGTIKEGDVVIFFNYRNDRAKELTVVLTQQDMPEAGMHTIPGLQYYCMTPYDASFK 295          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_PROMP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.039e-19
Identity = 69/204 (33.82%), Postives = 105/204 (51.47%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNAN--DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LH+ GL SDGGVHS +D L  L+K ASE   +++ +HI+TDGRD    S+  ++  IE  + + +      +IAS  GR ++ MDR    W+  ++   A V    P+  K  +     L +  NAN  D++L P  I  +  K      D D+++ FNFR DR   + KAL  ++FD F R   P +      QY+  L + +
Sbjct:  124 LHITGLCSDGGVHSHIDHLLGLIKWASEEHIEKVAIHIITDGRDTPAKSAYKYIRQIEDCIKKFK----VGEIASICGRYWI-MDR-NLIWERTEK---AFVNLTDPNGKKIDISPADYLNKSYNANITDEFLEPIRISKDFLK------DEDSLICFNFRPDRARQIIKALSEKEFDNFKRKSIPDVDILTFTQYEANLPVKI 312          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_PROM3 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus (strain MIT 9303) GN=gpmI PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.039e-19
Identity = 73/204 (35.78%), Postives = 105/204 (51.47%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAV--EAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LHL+GL SDGGVHS ++ L  LL  A+  G  ++ LH++TDGRD    S+  ++  IE D     G G   ++AS  GR Y  MDR ++ W+   R +  +VL + P++  S V  E V          D++L P  + +   K      DGD +V FNFR DR   L ++L   DFD F R   P +      QY+ +L + V
Sbjct:  123 LHLLGLCSDGGVHSHINHLCGLLHWAAAAGLNKVALHLITDGRDTPTQSASNYLHQIE-DAINASGVG---ELASLCGR-YWAMDR-DHRWERTIRAY--EVLTD-PNQSISRVTAEDVLSASYANGTTDEFLEPTRLSNNYFK------DGDGLVMFNFRPDRARQLVQSLTLPDFDGFPRANQPSLDVVTFTQYEHDLPVAV 311          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_NITOC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=gpmI PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.039e-19
Identity = 62/203 (30.54%), Postives = 110/203 (54.19%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKI-RYAGMLQYDGELKLPV 606
            +H++GLLS  G+H   D +  +++ A +R  + + LH   DGRD    S+   +  ++    EL GKG   + AS  GR Y  MDR ++ W  ++  ++    G+A ++ +SA +A+    E+    D+++    IV  +GKA   + DGD ++  NFR+DR   + +A    DF  F+R+ +PK+ ++  + +Y  E  +PV
Sbjct:  113 IHILGLLSPSGIHCHEDHIHAMVELAIKRRCQEVYLHAFLDGRDTAPKSAQASILAMQAKFTEL-GKG---RFASLIGR-YYGMDR-DHRWPRIQAAYNLIATGQAEYEAESAKQALAMAYER-GETDEFVQATRIV-PSGKAPVQVKDGDVIIFMNFRSDRARQITRAFIEPDFTGFERLYWPKLAQFVSLTEYSKEFDIPV 307          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_IDILO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Idiomarina loihiensis GN=gpmI PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.039e-19
Identity = 70/202 (34.65%), Postives = 107/202 (52.97%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR-VRFPKIRYAGMLQYDGELKLP 603
            +H++GLLS GGVHS  D L  +++ A E+GA+ + LH   DGRD    S++  +E  E   A L GKG   + A+  GR +  MDR +  W+ +++ + A   G +     +A +AV+   E+    D+++ P VI         PI +GD+V   NFRADR   + +A   +DFD FDR  R     +  + QY   L+ P
Sbjct:  113 VHIMGLLSAGGVHSHEDHLVAMIEMAVEQGAEDVYLHAFLDGRDTPPKSALPSIERFEALFARL-GKG---RFATLSGRFF-AMDR-DKRWERIEQSYKAVYHGLSGVTSANATDAVENAYER-GETDEFVTPVVIGQP-----APIANGDSVFFMNFRADRAREMTQAFVDKDFDGFDRGSRADISEFVMLTQYADTLEAP 302          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_PSYIN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Psychromonas ingrahamii (strain 37) GN=gpmI PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.969e-19
Identity = 63/201 (31.34%), Postives = 104/201 (51.74%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLP 603
            +H++GL S GGVHS    +   ++ A++RGAK I +H   DGRD    S+ G +   ++  A+L G G  A +    GR Y  MDR +N WD V++ ++     +A H  +SA+  ++    + + ND+++   VI +        I DGDAV+  NFRADR   L       +F  F+R   P + +  + ++  ++  P
Sbjct:  113 VHIMGLASPGGVHSHDQHIVAAIELAAQRGAKNILVHAFLDGRDTPPRSAAGTLALFDEKYAQL-GVGRTATLV---GR-YFAMDR-DNRWDRVEQAYNLLTQAKADHTAESALAGLENAYAR-DENDEFVKATVIGEP-----AAIEDGDAVLFMNFRADRARELTYTFTDSNFSGFERASVPNVHFVTLTEFADDITAP 301          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila (strain Lens) GN=gpmI PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.969e-19
Identity = 69/199 (34.67%), Postives = 102/199 (51.26%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRY-AGMLQYDGEL 594
            LH++GLLS GGVHS    L  LL   +++  + + LH+  DGRD    S++  ++ + ++LA    K   A I S  GR Y  MDR +  W  V+  ++    G++  +F  A  A+     +   +D+++PP +I  E+      I DGDAV+ FNFRADR   L        F  F+R   PK+ Y   M QYD  L
Sbjct:  112 LHIMGLLSPGGVHSHEQHLFALLALCNQKKFRSVHLHLFLDGRDTPPQSALDSLKCLNEELA----KHPVATINSICGR-YYAMDR-DKRWQRVEPVYNLLTQGKSERQFPDAETAI-HFYYKNKISDEFVPPTLIGKEHS-----IQDGDAVLFFNFRADRARQLTSTFLDPSFKGFERKTLPKLSYFVSMTQYDKNL 298          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_PSYA2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.770e-19
Identity = 68/199 (34.17%), Postives = 105/199 (52.76%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRG--KGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPH---KFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKA--LEYEDFDXFDRVRFPKIRYAGML 576
            +H++GLLSDGGVHS  D ++ +   A   GAK + +H   DGRD    S+  ++  +   + +L    +    QIAS  GR Y  MDR +N WD V++ ++    G+A     +   AV+A  K RE     D+++ P V++  + +    + D DA++  NFRADR   LA+A  L   +F  F R + PK+    ML
Sbjct:  137 VHIMGLLSDGGVHSNQDHIEAMCHSALVHGAKNVFVHCFLDGRDTPPKSADKYINRLRDHIIKLNAHYESGRVQIASIIGR-YYAMDR-DNRWDRVQKAYELITEGKADRLSTRADGAVQAAYKARE----TDEFINPTVVIGRD-EVPYTVDDNDALIFMNFRADRARELAQAFVLPDHEFSGFARNKQPKLAAFVML 328          
The following BLAST results are available for this feature:
BLAST of CF417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_HALMA2.327e-1935.472,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACFR2.327e-1934.832,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACFN2.327e-1934.832,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROMP3.039e-1933.822,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROM33.039e-1935.782,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_NITOC3.039e-1930.542,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_IDILO3.039e-1934.652,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSYIN3.969e-1931.342,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPL3.969e-1934.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSYA26.770e-1934.172,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-272 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417342 ID=CF417342; Name=CF417342; organism=Citrus sinensis; type=EST; length=625bp
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGC
GTAGGATTCGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAA
AGGTGTTGACGCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGA
TGGACCGTTATGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCC
CAAGTTCTTGGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGT
CAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCAT
TTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGT
GATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGC
TAAGGCCCTTGAATATGAAGATTTTGACNAATTTGATCGAGTTCGGTTCC
CTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTT
CCCGTCATTACCTTGTGTCTCCTCC
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