CF417342

Overview
NameCF417342
Unique NameCF417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_LARHH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Laribacter hongkongensis (strain HLHK9) GN=gpmI PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.841e-19
Identity = 66/197 (33.50%), Postives = 102/197 (51.78%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGE 591
            LH++GLLSDGGVHS  + +  L++ A   G   IR+H   DGRD    S+  ++E ++  LAE      +A++A+  GR Y  MDR +  W+ V++ +   V GEA  +    + A+     + + ND+++    I      A  P+ DGDAV+  NFRADR   L  AL   +FD F   +     Y  + +Y  +
Sbjct:  110 LHILGLLSDGGVHSHENHIHALIRAAQAAGVADIRVHAFLDGRDTPPRSARTYLERLDAVLAEC----PNARLATVCGR-YFAMDR-DKRWERVEQAYRLIVDGEAAFQADDGLSALAAAYAR-DENDEFVRATRI-----GAPAPMQDGDAVIFMNFRADRARELTSALTDPEFDGFSARQLRLSDYVTLTRYGAD 294          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_ARCB4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Arcobacter butzleri (strain RM4018) GN=gpmI PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.841e-19
Identity = 65/203 (32.02%), Postives = 106/203 (52.22%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPVI 609
            +HL+GL SDGGVHS ++ +  + K A   G K++ +HI+TDGRDV    +  ++  I +   E      D +IA+  GR Y  MDR +N WD VK+ +D+  +  A  K +  + +  +   +    D+++ P      NG     I   D ++  NFR+DRM  ++      DF+ FD  +   + +A M QYD  + +PV+
Sbjct:  106 IHLLGLASDGGVHSHINHIIAMAKIAKNMG-KKVFIHIITDGRDVAPNCAKTYINQILEICDE------DIKIATISGR-YYAMDR-DNRWDRVKKAYDS--ITFANPKTQDDILSYIETSYKNEIFDEFIEPTSFEGYNG-----IEKNDGIIFCNFRSDRMREISSVFAKADFNEFDTFK-GSLNFASMTQYDKNVFIPVL 291          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_PROMM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus (strain MIT 9313) GN=gpmI PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.155e-18
Identity = 73/204 (35.78%), Postives = 105/204 (51.47%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAV--EAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LHL+GL SDGGVHS ++ L  LL  A+  G  ++ +H++TDGRD    S+  ++  IE D     G G   ++AS  GR Y  MDR ++ W+   R +  +VL + P++  S V  E V          D++L P  + +   K      DGD +V FNFR DR   L +AL   DFD F R   P +      QY+ +L + V
Sbjct:  123 LHLLGLCSDGGVHSHINHLCGLLHWAAAAGLNKVAVHLITDGRDTPIQSASKYLHQIE-DAINASGVG---ELASLCGR-YWAMDR-DHRWERTIRAY--EVLTD-PNQSISRVTAEDVLSASYANGTTDEFLEPTRLSNNYFK------DGDGLVMFNFRPDRARQLVQALTLPDFDGFPRANQPSLDVVTFTQYEHDLPVGV 311          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_YERE8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=gpmI PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.508e-18
Identity = 64/180 (35.56%), Postives = 97/180 (53.89%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR 540
            +H++GLLS GGVHS  D +  +++ A++RGA  I LH   DGRD    S+   ++   +  A L GKG   +IAS  GR Y  MDR +N WD V+  +D     +      +AV  ++    + N ND+++ P  ++   G+    + DGDA++  NFRADR   + +     DFD F R
Sbjct:  113 VHIMGLLSAGGVHSHEDHILAMVELAAKRGATAIYLHAFLDGRDTPPRSAEPSLKRFTEKFAAL-GKG---RIASIIGR-YYAMDR-DNRWDRVQLAYDLLTQAKGEFTADNAVVGLQAAYAR-NENDEFVKP-TVIQAAGEPDAAMNDGDALIFMNFRADRARQITRTFVNADFDGFKR 284          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_COXBN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=gpmI PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.508e-18
Identity = 71/186 (38.17%), Postives = 97/186 (52.15%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKI 558
            +H++GLLS GGVHSR +Q+  L++ A   G K+I LH + DGRD    S++  +E I  D     G G   +IAS  GR Y  MDR +  WD  ++ +D    G A     +A E +    EQ N  D+++ P  I   N   +  I DGD VV  NFRADR   L  A   + F  F+R   PK+
Sbjct:  117 VHILGLLSPGGVHSRDNQIAALVELAHRCGIKKIYLHAILDGRDTPPKSALLSIEKI-TDQFHAYGNG---KIASLIGR-YYAMDR-DKRWDRTEKAYDLLTQGTAQFHAPTAKEGLMLAYEQGN-TDEFVSPTSIHRHNETPI-TIEDGDVVVFMNFRADRARQLTYAFLDDHFTAFNRQVRPKL 294          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_YERP3 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=gpmI PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.970e-18
Identity = 62/180 (34.44%), Postives = 96/180 (53.33%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR 540
            +H++GLLS GGVHS  D +  +++ A++RGA  I LH   DGRD    S+   ++      AEL G G   +IAS  GR Y  MDR +N WD V+  +D     +      +AV  ++    +   ND+++ P  ++   G+A   + +GD ++  NFRADR+  + +     DFD F R
Sbjct:  113 VHIMGLLSAGGVHSHEDHIMAMVELAAKRGATAIYLHAFLDGRDTPPRSAESSLKRFTAKFAEL-GNG---RIASIIGR-YYAMDR-DNRWDRVQLAYDLLTQAKGEFTADNAVAGLQAAYAR-GENDEFVKP-TVIQATGEADAAMNEGDTLIFMNFRADRVRQITRTFVNADFDGFKR 284          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_LEGPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Legionella pneumophila (strain Paris) GN=gpmI PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.970e-18
Identity = 68/199 (34.17%), Postives = 103/199 (51.76%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIR-YAGMLQYDGEL 594
            LH++GLLS GGVHS    L  LL   +++  + + LH+  DGRD    S++  ++ + ++LA    K   A I S  GR Y  MDR +  W+ V+  ++    G++  +F  A  A+     +   +D+++PP +I  E+      I DGDAV+ FNFRADR   L        F  F+R   PK+  +  M QYD  L
Sbjct:  112 LHIMGLLSPGGVHSHEQHLFALLALCNQKKFRSVHLHLFLDGRDTPPQSALDSLKCLNEELA----KHPVATINSICGR-YYAMDR-DKRWERVEPVYNLLTQGKSERQFPDAETAI-HFYYKNKISDEFVPPTLIGKEHS-----IQDGDAVLFFNFRADRARQLTSTFLDPLFKGFERKTLPKLSCFVSMTQYDKNL 298          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_COXBU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Coxiella burnetii GN=gpmI PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.970e-18
Identity = 71/186 (38.17%), Postives = 97/186 (52.15%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKI 558
            +H++GLLS GGVHSR +Q+  L++ A   G K+I LH + DGRD    S++  +E I  D     G G   +IAS  GR Y  MDR +  WD  ++ +D    G A     +A E +    EQ N  D+++ P  I   N   +  I DGD VV  NFRADR   L  A   + F  F+R   PK+
Sbjct:  117 VHILGLLSPGGVHSRDNQIAALVELAHRCGIKKIYLHAILDGRDTPPKSALLSIEKI-TDQFHAYGNG---KIASLIGR-YYAMDR-DKRWDRTEKAYDLLTQGTAQFHALTAKEGLMLAYEQGN-TDEFVSPTSIHRHNETPI-TIEDGDVVVFMNFRADRARQLTYAFLDDHFTAFNRQVRPKL 294          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_COXBR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=gpmI PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.970e-18
Identity = 71/186 (38.17%), Postives = 97/186 (52.15%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKI 558
            +H++GLLS GGVHSR +Q+  L++ A   G K+I LH + DGRD    S++  +E I  D     G G   +IAS  GR Y  MDR +  WD  ++ +D    G A     +A E +    EQ N  D+++ P  I   N   +  I DGD VV  NFRADR   L  A   + F  F+R   PK+
Sbjct:  117 VHILGLLSPGGVHSRDNQIAALVELAHHCGIKKIYLHAILDGRDTPPKSALLSIEKI-TDQFHAYGNG---KIASLIGR-YYAMDR-DKRWDRTEKAYDLLTQGTAQFHALTAKEGLMLAYEQGN-TDEFVSPTSIHRHNETPI-TIEDGDVVVFMNFRADRARQLTYAFLDDHFTAFNRQVRPKL 294          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_CHRVO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Chromobacterium violaceum GN=gpmI PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.572e-18
Identity = 68/197 (34.52%), Postives = 103/197 (52.28%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGE 591
            LH++GLLSDGGVHS  + +  L++ A   G  +I +H   DGRD    S+  +++ ++  LAE      +A++ S  GR Y  MDR +  W+ V+  +   V GE     ++ ++A+K   E+ + ND+++    I      A   + DGDA++  NFRADR   L  AL    FD F + R PK  Y   L   GE
Sbjct:  110 LHILGLLSDGGVHSHENHIHALIRAAQAAGVPKIYVHAFLDGRDTPPRSAETYLKRLDAALAEC----PNARLVSVTGR-YWAMDR-DKRWERVEPAYRLLVDGEGLFHAETGLDALKAAYER-DENDEFVKATGI-----GAPVKMQDGDALIFMNFRADRARQLTSALTDPAFDGF-KARQPKFGYYATLTSYGE 293          
The following BLAST results are available for this feature:
BLAST of CF417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_LARHH8.841e-1933.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ARCB48.841e-1932.022,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROMM1.155e-1835.782,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_YERE81.508e-1835.562,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_COXBN1.508e-1838.172,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_YERP31.970e-1834.442,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEGPA1.970e-1834.172,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_COXBU1.970e-1838.172,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_COXBR1.970e-1838.172,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CHRVO2.572e-1834.522,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-272 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417342 ID=CF417342; Name=CF417342; organism=Citrus sinensis; type=EST; length=625bp
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGC
GTAGGATTCGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAA
AGGTGTTGACGCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGA
TGGACCGTTATGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCC
CAAGTTCTTGGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGT
CAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCAT
TTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGT
GATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGC
TAAGGCCCTTGAATATGAAGATTTTGACNAATTTGATCGAGTTCGGTTCC
CTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTT
CCCGTCATTACCTTGTGTCTCCTCC
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