CF417342

Overview
NameCF417342
Unique NameCF417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_MOOTA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Moorella thermoacetica (strain ATCC 39073) GN=gpmI PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.677e-28
Identity = 83/203 (40.89%), Postives = 117/203 (57.64%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFP-KIRYAGMLQYDGELKLPV 606
            LHL+GL+SDGGVHS LD L  LL  A   G +R+ +H   DGRDV   S+ G++E +E    E R KG+ A IA+  GR Y  MDR +  W+   R + A V GE  H+  S  EA++   E+ +  D+++ P VI   +G+ +  + +GD+VV FNFRADR   L +A    DFD F+R      I++  + QYD  +  PV
Sbjct:  114 LHLMGLVSDGGVHSHLDHLYALLDLAKREGLERVYIHAFLDGRDVPPASAAGYLEQVED---ECRQKGIGA-IATIMGR-YYAMDR-DRRWERTARAYRALVAGEG-HQASSPSEAIRASYER-DITDEFVEPAVIT-RDGRPLATVREGDSVVFFNFRADRARQLTRAFVDRDFDAFERPGGRLDIQFVCLTQYDVTIPAPV 307          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_LISW6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=gpmI PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.677e-28
Identity = 77/197 (39.09%), Postives = 117/197 (59.39%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR-VRFPK-IRYAGMLQYD 585
            LHL GLLSDGGVHS ++ L  LL+ A ++G K + +H   DGRDV   SS+ ++ET++K + +L       +IA+  GR Y  MDR +  W+ V++ + A V  E   KF+  +E VK      + ND+++ P  I+ ++GK V  + D DAV+ FNFR DR + L+ A   +++D FDR    PK I++  M  Y+
Sbjct:  111 LHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETLQKAMNDLN----YGEIATVSGRFY-AMDR-DKRWERVEKAYKAIVSAEG-EKFEDPIELVKASYAN-DKNDEFVVP-AIITKDGKPVATVKDNDAVIFFNFRPDRAIQLSNAFTDKEWDHFDRGANHPKNIKFVTMTLYN 298          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_LISMF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=gpmI PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.677e-28
Identity = 78/204 (38.24%), Postives = 119/204 (58.33%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR-VRFPK-IRYAGMLQYDGELKLPV 606
            LHL GLLSDGGVHS ++ L  LL+ A ++G K + +H   DGRDV   SS+ ++ET++K +++L        IA+  GR Y  MDR +  W+ V++ + A V  E   KF+  +E VK      + ND+++ P  I+ ++GK V  + D DAV+ FNFR DR + L+ A   +++D FDR    PK I++  M  Y+  +   V
Sbjct:  111 LHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETLQKAISDLN----YGAIATVSGRFY-AMDR-DKRWERVEKAYKAIVNAEG-EKFEDPIELVKASYAN-DKNDEFVVP-AIITKDGKPVATVKDNDAVIFFNFRPDRAIQLSNAFTDKEWDHFDRGANHPKNIKFVTMTLYNPSIDAEV 305          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_LISMO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Listeria monocytogenes GN=gpmI PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.109e-28
Identity = 78/204 (38.24%), Postives = 119/204 (58.33%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR-VRFPK-IRYAGMLQYDGELKLPV 606
            LHL GLLSDGGVHS ++ L  LL+ A ++G K + +H   DGRDV   SS+ ++ET++K +++L        IA+  GR Y  MDR +  W+ V++ + A V  E   KF+  +E VK      + ND+++ P  I+ ++GK V  + D DAV+ FNFR DR + L+ A   +++D FDR    PK I++  M  Y+  +   V
Sbjct:  111 LHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSSLEYLETLQKAISDLN----YGAIATVSGRFY-AMDR-DKRWERVEKAYKAIVSAEG-EKFEDPIELVKASYAN-DKNDEFVVP-AIITKDGKPVATVKDNDAVIFFNFRPDRAIQLSNAFTDKEWDHFDRGADHPKNIKFVTMTLYNPSIDAEV 305          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_CLOPE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium perfringens GN=gpmI PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.109e-28
Identity = 78/199 (39.20%), Postives = 120/199 (60.30%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELK 597
            LHL+GLLS+GGVHS +D L+ LL+ A ++G +++ +H   DGRDV   S   F+  +E  + E+   GV  +IA+  GR Y  MDR +N W+ V+  ++A  LGE   K  SAVEA++K     N  D+++ P  +++E+G  V  I DGD+V+ FNFR DR   + +A+   +F  F+R +   + +  M QYD  L+
Sbjct:  111 LHLMGLLSNGGVHSHIDHLKGLLELAKKKGLQKVYVHAFMDGRDVAPSSGKDFIVELENAMKEI---GV-GEIATISGR-YYAMDR-DNRWERVELAYNAMALGEG-EKASSAVEAIEK-SYHDNKTDEFVLP-TVIEEDGHPVARIKDGDSVIFFNFRPDRAREITRAIVDPEFKGFERKQL-HVNFVCMTQYDKTLE 299          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_METBU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Methanococcoides burtonii (strain DSM 6242) GN=gpmI PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.978e-28
Identity = 73/202 (36.14%), Postives = 115/202 (56.93%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LHL+GL S GGVHS +  L+ L++ A + G   I +H   DGRDV   S    +E +++ +       V  +IA+  GR Y  MDR +N WD  +  ++A   G+  +  K  V+A+ +   +   ND+++ P VIVDENG+ +G + + D V+ FNFR DR   L  A   ++FD F+R   PK+ +  M +YD +L++P+
Sbjct:  113 LHLMGLFSYGGVHSHMKHLRALIEFAKDEGITEIFIHAFLDGRDV---SPRAALEDMKEHVEYCNNLSV-GKIATVSGRYYA-MDR-DNRWDRTEDAYNAITRGDGVYYSKGPVDAISEGYGR-GENDEFIKPTVIVDENGRPIGRMNENDTVIFFNFRPDRARQLTYAFVNDEFDNFERKSHPKVHFVCMTEYDEKLEVPI 307          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SHESR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sp. (strain MR-7) GN=gpmI PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.777e-27
Identity = 74/202 (36.63%), Postives = 115/202 (56.93%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  + ++ + + A  RGA ++ LH   DGRD    S+ G +   + DL    G G   +IAS  GR Y  MDR +N WD V + +D    G+A  ++ +AV A++   E+ N ND+++    I D  GK V  + DGDA++  NFRADR   + ++    DFD F+R   PK+ +  + +Y  ++K P+
Sbjct:  113 VHIMGLLSPGGVHSHEEHIEAMCRMAVARGATKVYLHAFLDGRDTPPRSAKGSLSHFD-DLFTTLGHG---RIASIIGR-YFAMDR-DNRWDRVSQAYDLITQGKAKFQYDNAVTALEAAYER-NENDEFVSSSAITDSEGK-VASLNDGDALIFMNFRADRARQITRSFINADFDGFERAVTPKVNFVTLTEYAADIKAPI 306          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SHESM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sp. (strain MR-4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.777e-27
Identity = 74/202 (36.63%), Postives = 115/202 (56.93%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  + ++ + + A  RGA ++ LH   DGRD    S+ G +   + DL    G G   +IAS  GR Y  MDR +N WD V + +D    G+A  ++ +AV A++   E+ N ND+++    I D  GK V  + DGDA++  NFRADR   + ++    DFD F+R   PK+ +  + +Y  ++K P+
Sbjct:  113 VHIMGLLSPGGVHSHEEHIEAMCRMAVARGATKVYLHAFLDGRDTPPRSAKGSLSHFD-DLFTTLGHG---RIASIIGR-YFAMDR-DNRWDRVSQAYDLITQGKAKFQYDNAVTALEAAYER-NENDEFVSSSAITDSEGK-VASLNDGDALIFMNFRADRARQITRSFINADFDGFERAVTPKVNFVTLTEYAADIKAPI 306          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_THICR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Thiomicrospira crunogena (strain XCL-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.960e-27
Identity = 75/184 (40.76%), Postives = 109/184 (59.24%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFP 552
            +H++GLLSDGGVHS +  ++  +K A +RGAK + +HI TDGRD    S++ ++E +E  + EL G     +IAS  GR Y  +DR +N W+ VK+ +DA   G A  + K A EAV +L      ND+++   VI   NGK    + DGD+V+  NFR+DR   L +A   +DF  F R + P
Sbjct:  117 VHILGLLSDGGVHSHISHIKASIKMAHDRGAK-VYVHIFTDGRDTAPQSALQYIEELETFMKELGG----GRIASVTGR-YFALDR-DNRWERVKKAYDAIACGSAEFEAKDAKEAV-ELAYARGENDEFIQATVIPRNNGKP-ARVKDGDSVIFMNFRSDRARQLTEAFIMDDFADFHRCKTP 291          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SHESA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sp. (strain ANA-3) GN=gpmI PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.171e-27
Identity = 73/202 (36.14%), Postives = 115/202 (56.93%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  + ++ + + A  RGA ++ LH   DGRD    S+ G +   + DL    G G   +IAS  GR Y  MDR +N WD V + ++    G+A  ++ +AV A++   E+ N ND+++    I D  GK V  + DGDA++  NFRADR   + ++    DFD F+R   PK+ +  + +Y  ++K P+
Sbjct:  113 VHIMGLLSPGGVHSHEEHIEAMCRMAVARGATKVYLHAFLDGRDTPPRSAKGSLSHFD-DLFTTLGHG---RIASIIGR-YFAMDR-DNRWDRVSQAYELITQGKAKFQYDNAVTALEAAYER-NENDEFVSSSAITDSEGK-VASLNDGDALIFMNFRADRARQITRSFINADFDGFERAVTPKVNFVTLTEYAADIKAPI 306          
The following BLAST results are available for this feature:
BLAST of CF417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_MOOTA4.677e-2840.892,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISW64.677e-2839.092,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISMF4.677e-2838.242,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LISMO6.109e-2838.242,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOPE6.109e-2839.202,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_METBU7.978e-2836.142,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESR1.777e-2736.632,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESM1.777e-2736.632,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_THICR3.960e-2740.762,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESA5.171e-2736.142,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-272 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417342 ID=CF417342; Name=CF417342; organism=Citrus sinensis; type=EST; length=625bp
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGC
GTAGGATTCGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAA
AGGTGTTGACGCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGA
TGGACCGTTATGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCC
CAAGTTCTTGGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGT
CAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCAT
TTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGT
GATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGC
TAAGGCCCTTGAATATGAAGATTTTGACNAATTTGATCGAGTTCGGTTCC
CTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTT
CCCGTCATTACCTTGTGTCTCCTCC
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