CF417342

Overview
NameCF417342
Unique NameCF417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_YERPS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Yersinia pseudotuberculosis GN=gpmI PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.360e-18
Identity = 62/180 (34.44%), Postives = 95/180 (52.78%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR 540
            +H++GLLS GGVHS  D +  +++ A++RGA  I LH   DGRD    S+   ++      AEL G G   +IAS  GR Y  MDR +N WD V+  +D     +      +AV  ++    +   ND+++ P  ++   G+A   + +GD ++  NFRADR   + +     DFD F R
Sbjct:  113 VHIMGLLSAGGVHSHEDHIMAMVELAAKRGATAIYLHAFLDGRDTPPRSAESSLKRFTAKFAEL-GNG---RIASIIGR-YYAMDR-DNRWDRVQLAYDLLTQAKGEFTADNAVAGLQAAYAR-GENDEFVKP-TVIQATGEADAAMNEGDTLIFMNFRADRARQITRTFVNADFDGFKR 284          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_GLOVI (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Gloeobacter violaceus GN=gpmI PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.360e-18
Identity = 71/203 (34.98%), Postives = 101/203 (49.75%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGE-APHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LH +GL+SDGGVHS ++ L  LL  A   G + + +H ++DGRD    S V + E +E  +AE  G G    IA+ GGR Y  MDR +  WD  +  +  +V+ E  P   K A E +++       ++  LP  +       A G +  GD V+ FNFR DR   L +A    DFD F R     + +    QYD  L + V
Sbjct:  118 LHGVGLVSDGGVHSHIEHLFGLLDLAKREGFETLFIHGMSDGRDTPPTSGVAYFEKLEARIAE-TGFGT---IATLGGR-YFGMDR-DRRWDRTEAMY--RVMTETGPGTGKRASETLRESHAAGKTDEFVLPVRL-------AAGAVEPGDGVIYFNFRPDRARQLTRAFVQADFDGFVRPYLDPLAFLTFTQYDATLPVAV 305          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_ANAVT (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gpmI PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.360e-18
Identity = 65/202 (32.18%), Postives = 98/202 (48.51%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LHL+GL S+GGVHS +  L  LL  A E+    + +H +TDGRD      +  +  +E D     G G   +I +  GR Y  MDR +  WD ++R +D      A    + AV+ ++    +   ND+++ P  I      A G +  GD V+ FNFR DR   L +A    +F  F R +   + +    QYD +L + V
Sbjct:  114 LHLVGLCSEGGVHSHITHLFGLLDLAKEQRISEVCIHAITDGRDTAPTDGINAISALE-DYINHVGIG---RIVTVSGR-YYAMDR-DRRWDRIQRAYDVMTQDGAGDG-RKAVDVLQASYAE-GVNDEFIVPVRI------APGTVESGDGVIFFNFRPDRSRQLTQAFVSPEFTGFARQQIKPLSFVTFTQYDSDLSVSV 301          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_HERA2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=gpmI PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.388e-18
Identity = 59/176 (33.52%), Postives = 95/176 (53.98%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFD 528
            +HLIGL+  GGVH+    L  LL+  +++G     +H   DGRD L  S +G++  +++ ++++   GV  Q+AS  GR Y  MDR +  W+ V   + A V G   H     + A+++   +    D+++   VI D  G A+  I  GD V+ FNFRADR+  + +AL   D +
Sbjct:  112 MHLIGLIGRGGVHAYDIHLAGLLQLMAQQGVNHTYIHAFMDGRDTLPQSGLGYMRELQQTISQI---GV-GQVASVIGR-YYAMDR-DKRWERVGAAYAAMVEG-VGHTASDPISAIEQAYLRDARGDEFIEATVITDSAGVALPRISTGDVVICFNFRADRVRQITRALMQSDLN 280          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_CYAP7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Cyanothece sp. (strain PCC 7424) GN=gpmI PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.731e-18
Identity = 69/203 (33.99%), Postives = 99/203 (48.77%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPVI 609
            LHLIGL S GGVHS L  L  LL  A       + +H +TDGRD      V  +E I+  + ++   GV  +I++  GR Y  MDR +  WD VK+ +D  +  +     +SA + +K    Q   ++  LP  V       A G I  GD ++ +NFR DR   L  A    DFD F+R     + +    QYD +L + V+
Sbjct:  114 LHLIGLSSAGGVHSHLCHLLGLLDLAKLHSVSDVCVHAITDGRDTNPTEGVNVIEAIQAHIDKI---GV-GRISTVCGR-YYAMDR-DRRWDRVKKAYDL-LTEDGEGDGRSASQILKDFYAQDITDEFILPTRV-------APGAIEPGDGIIFYNFRPDRARQLCYAFTMPDFDGFERDLIQPLSFVTFTQYDPKLPVKVV 302          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_ANASP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Anabaena sp. (strain PCC 7120) GN=gpmI PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.731e-18
Identity = 65/202 (32.18%), Postives = 99/202 (49.01%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LHL+GL S+GGVHS +  L  LL  A E+    + +H +TDGRD      +  +  +E D     G G   +I +  GR Y  MDR +  WD V+R +D  +  +     + AV+ ++    +   ND+++ P  I      A G +  GD V+ FNFR DR   L +A    +F  F R +   + +    QYD +L + V
Sbjct:  114 LHLVGLCSEGGVHSHITHLFGLLDLAKEQRISEVCIHAITDGRDTAPTDGINAISALE-DYINHVGIG---RIVTVSGR-YYAMDR-DRRWDRVQRAYDV-MTQDGVGDGRKAVDVLQASYAE-GVNDEFIVPVRI------APGTVEPGDGVIFFNFRPDRSRQLTQAFVSPEFTGFARQQIKPLSFVTFTQYDSDLSVSV 301          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_ACIAD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Acinetobacter sp. (strain ADP1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.731e-18
Identity = 70/203 (34.48%), Postives = 106/203 (52.22%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKI-RYAGMLQYDGELKLPV 606
            +H++GLLS+GGVHS  D +  + + A +RGA  + LH   DGRD    S+   +E ++   A+   +G   +I S  GR Y  MDR +N WD V++ +      EA    +SAV+ ++ L      +D+    FV     G AV  + DGD++V  NFRADR   L +A    DF  F R R P + ++  + +Y   +  PV
Sbjct:  116 VHIMGLLSEGGVHSHEDHIVAMCELALKRGAT-VYLHAFLDGRDTPPKSAQPSLEKLDALFAQYPEQG---RIVSMIGR-YFAMDR-DNRWDRVEQAYRLLTESEAVRTAQSAVQGLE-LAYAAGESDE----FVKATRIGDAVA-VQDGDSIVFMNFRADRARELTRAFVEHDFSGFTRQRIPHLSKFVMLTRYQATIDAPV 306          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_YERPP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Yersinia pestis (strain Pestoides F) GN=gpmI PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.775e-18
Identity = 61/180 (33.89%), Postives = 95/180 (52.78%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR 540
            +H++GLLS GGVHS  D +  +++ A++RGA  I LH   DGRD    S+   ++      AEL G G   +IAS  GR Y  MDR +N WD V+  +D     +      +AV  ++    +   ND+++ P  ++   G+A   + +GD ++  NFRADR   + +     +FD F R
Sbjct:  113 VHIMGLLSAGGVHSHEDHIMAMVELAAKRGATAIYLHAFLDGRDTPPRSAESSLKRFTAKFAEL-GNG---RIASIIGR-YYAMDR-DNRWDRVQLAYDLLTQAKGEFTADNAVAGLQAAYAR-GENDEFVKP-TVIQATGEADAAMNEGDTLIFMNFRADRARQITRTFVNAEFDGFKR 284          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_YERPN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=gpmI PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.775e-18
Identity = 61/180 (33.89%), Postives = 95/180 (52.78%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR 540
            +H++GLLS GGVHS  D +  +++ A++RGA  I LH   DGRD    S+   ++      AEL G G   +IAS  GR Y  MDR +N WD V+  +D     +      +AV  ++    +   ND+++ P  ++   G+A   + +GD ++  NFRADR   + +     +FD F R
Sbjct:  113 VHIMGLLSAGGVHSHEDHIMAMVELAAKRGATAIYLHAFLDGRDTPPRSAESSLKRFTAKFAEL-GNG---RIASIIGR-YYAMDR-DNRWDRVQLAYDLLTQAKGEFTADNAVAGLQAAYAR-GENDEFVKP-TVIQATGEADAAMNEGDTLIFMNFRADRARQITRTFVNAEFDGFKR 284          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_YERPE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Yersinia pestis GN=gpmI PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.775e-18
Identity = 61/180 (33.89%), Postives = 95/180 (52.78%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR 540
            +H++GLLS GGVHS  D +  +++ A++RGA  I LH   DGRD    S+   ++      AEL G G   +IAS  GR Y  MDR +N WD V+  +D     +      +AV  ++    +   ND+++ P  ++   G+A   + +GD ++  NFRADR   + +     +FD F R
Sbjct:  113 VHIMGLLSAGGVHSHEDHIMAMVELAAKRGATAIYLHAFLDGRDTPPRSAESSLKRFTAKFAEL-GNG---RIASIIGR-YYAMDR-DNRWDRVQLAYDLLTQAKGEFTADNAVAGLQAAYAR-GENDEFVKP-TVIQATGEADAAMNEGDTLIFMNFRADRARQITRTFVNAEFDGFKR 284          
The following BLAST results are available for this feature:
BLAST of CF417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_YERPS3.360e-1834.442,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GLOVI3.360e-1834.982,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ANAVT3.360e-1832.182,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HERA24.388e-1833.522,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CYAP75.731e-1833.992,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ANASP5.731e-1832.182,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ACIAD5.731e-1834.482,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_YERPP9.775e-1833.892,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_YERPN9.775e-1833.892,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_YERPE9.775e-1833.892,3-bisphosphoglycerate-independent phosphoglycera... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-272 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417342 ID=CF417342; Name=CF417342; organism=Citrus sinensis; type=EST; length=625bp
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGC
GTAGGATTCGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAA
AGGTGTTGACGCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGA
TGGACCGTTATGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCC
CAAGTTCTTGGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGT
CAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCAT
TTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGT
GATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGC
TAAGGCCCTTGAATATGAAGATTTTGACNAATTTGATCGAGTTCGGTTCC
CTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTT
CCCGTCATTACCTTGTGTCTCCTCC
back to top