CF417342

Overview
NameCF417342
Unique NameCF417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_YERPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=gpmI PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.775e-18
Identity = 61/180 (33.89%), Postives = 95/180 (52.78%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR 540
            +H++GLLS GGVHS  D +  +++ A++RGA  I LH   DGRD    S+   ++      AEL G G   +IAS  GR Y  MDR +N WD V+  +D     +      +AV  ++    +   ND+++ P  ++   G+A   + +GD ++  NFRADR   + +     +FD F R
Sbjct:  113 VHIMGLLSAGGVHSHEDHIMAMVELAAKRGATAIYLHAFLDGRDTPPRSAESSLKRFTAKFAEL-GNG---RIASIIGR-YYAMDR-DNRWDRVQLAYDLLTQAKGEFTADNAVAGLQAAYAR-GENDEFVKP-TVIQATGEADAAMNEGDTLIFMNFRADRARQITRTFVNAEFDGFKR 284          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_NOSP7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=gpmI PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.775e-18
Identity = 67/202 (33.17%), Postives = 101/202 (50.00%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LHL+GL S+GGVHS +  L  LL  A  +    + +H +TDGRD      V  + T+ ++  +  G G   +I +  GR Y  MDR ++ WD VKR +D           ++AVE ++    +    D+++ P  I      A G I  GD V+ FNFR DR   L +AL    F+ F+R +   + +    QYD +L + V
Sbjct:  114 LHLVGLCSEGGVHSHITHLFGLLDLAKNQQIPEVCIHAITDGRDTAPTDGVRAI-TMLQNYIDRTGIG---RIVTLSGRYYA-MDR-DHRWDRVKRAYDVMTQDGVGDN-RTAVEILQASYAE-GVKDEFVNPIRI------APGAIEPGDGVIFFNFRPDRSRQLTQALVSPTFNGFERQQITPLSFVTFTQYDSDLPVAV 301          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_THIDA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=gpmI PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.277e-17
Identity = 67/203 (33.00%), Postives = 101/203 (49.75%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKI-RYAGMLQYDGELKLPV 606
            LH++GLLSDGGVHS       LL  A+  G  ++ LH+  DGRD    S+  ++  +   +A+    GV   +AS  GR Y  MDR +  W  VK  +D    G A     SA +A  +        D+++    IV  +G+ V  + DGD+V+  NFR+DR   L++     DF  F+R R P++  Y  +  Y  +  + V
Sbjct:  111 LHVLGLLSDGGVHSHELHFHALLDLAAREGLSKVCLHVFLDGRDTPPKSAELYLRRLTDKIAQ---AGV-GHVASMIGR-YFAMDR-DRRWQRVKSAYDLLTQGAAEFSAGSA-QAGLEAAYARGETDEFVKATAIVPADGRPV-TMEDGDSVIFLNFRSDRARQLSRPFIEPDFSEFERERTPRLATYCTLTGYSDDFDVSV 305          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_BACV8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=gpmI PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.277e-17
Identity = 66/201 (32.84%), Postives = 92/201 (45.77%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLRE--QPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELK 597
            +H +GL S+GGVHS  D L  L   + E G +   +H   DGRD    S  GF+E +     +  GK     IAS  GR Y  MDR +  W+ VK  +D  V G    K K A + V+ ++E       D+++ P      N    G I +GD V+ FN+R DR   L   L  +D         P +++  M  YD   K
Sbjct:  110 IHFMGLTSNGGVHSSFDHLFKLCDISKEYGIENTFIHCFMDGRDTDPKSGKGFIEQLTAHCEKSAGK-----IASIVGRFY-AMDR-DKRWERVKEAYDLLVEG----KGKQATDMVQAMQESYDEGVTDEFIKPI----NNSTVDGTIKEGDVVIFFNYRNDRAKELTVVLTQQDMPEQGMHTIPGLQFYCMTPYDASFK 295          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_WOLPM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Wolbachia pipientis wMel GN=gpmI PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.667e-17
Identity = 70/202 (34.65%), Postives = 99/202 (49.01%), Query Frame = 1
Query:    4 HLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPVI 609
            H++GL+SDGGVHS    +  L    S+ G K + +H   DGRD L  S    ++   K +     KG D +IA+  GR Y  MDR +N W      ++A    +AP    +AV  ++    Q N  D+++ P VI D  G     I   D V+  NFRADRM+ LA  L     D     +F  I    M++Y  +LK+P I
Sbjct:  111 HIMGLVSDGGVHSHQKHISTLANKISQHGIK-VVIHAFLDGRDTLPNSGKKCIQEFTKSI-----KGNDTRIATVSGR-YYAMDR-DNRWKRTIEAYEAIAFAKAP-CHDNAVSLIEN-NYQNNITDEFIRPAVIGDYQG-----IKPEDGVLLANFRADRMIQLASIL-LGKTDYAKVAKFSSI--LSMMKYKEDLKIPYI 294          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_BACTN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacteroides thetaiotaomicron GN=gpmI PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.667e-17
Identity = 66/201 (32.84%), Postives = 92/201 (45.77%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLRE--QPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELK 597
            +H +GL S+GGVHS +  L  L   + E G     +H   DGRD    S  GF+E +     +  GK     IAS  GR Y  MDR +  W+ VK  +D  V G+     K A + V+ ++E       D+++ P V    N    G I +GD V+ FN+R DR   L   L  +D         P ++Y  M  YD   K
Sbjct:  110 VHFMGLTSNGGVHSSMVHLFKLCDISKEYGIDNTFIHCFMDGRDTDPKSGKGFIEELSAHCEKSAGK-----IASIIGR-YYAMDR-DKRWERVKEAYDLLVNGQG----KKATDMVQAMQESYDEGVTDEFIKPIV----NANCDGTIKEGDVVIFFNYRNDRAKELTVVLTQQDMPEAGMHTIPGLQYYCMTPYDASFK 295          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_ANTSP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Antithamnion sp. GN=gpmI PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.667e-17
Identity = 58/203 (28.57%), Postives = 102/203 (50.25%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPVI 609
            +H++GL S+GGVHS ++ L+ L++  S++      LH++TDGRD L   +  FV    K++ ++  +  + +I +  GR Y +MDR +  W   ++ + A V         S + ++     + N +D++LPP  I   N      IV  D+++ FNFR DR+  L  +    +F  F R     +      +YD  L +P +
Sbjct:  114 VHIVGLCSNGGVHSHINHLKALIQ-ISKQYKVMTCLHLITDGRDTLPKQAKLFV----KEIIDIIDENYNTEICTISGRYY-SMDR-DCRWSRTEKAYKAMVENSCNQNSSSDILSIIDKYYEQNISDEFLPPTKISMHN------IVHNDSLIFFNFRPDRIRQLLHSFAKPNFKGFQRKTIKNLMLTTFTEYDSTLSIPTV 303          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_ROSDO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=gpmI PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.178e-17
Identity = 67/194 (34.54%), Postives = 97/194 (50.00%), Query Frame = 1
Query:    4 HLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPK-IRYAGMLQY 582
            HL+G++SDGGVH  ++ +    K  ++     + +H LTDGRDV   S++G+ ET++  L +        +IA+  GR Y  MDR +N WD V + + A V G    K  SA +AV +   Q   ND+++ P V+    G       D D     NFRADR   +  A+   DF  F+    PK     GM QY
Sbjct:  113 HLMGVVSDGGVHGHINHMIAAAKALADENIPVV-IHALTDGRDVAPRSALGYFETLQAALPD------GVEIATVTGR-YFAMDR-DNRWDRVSKAYQAIVTGTG-RKAASASDAVDQAYGQ-GENDEFISPTVLGGYTGAK-----DNDGFFCLNFRADRAREIMAAIGDPDFTAFETGARPKWASLMGMAQY 290          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_DINSH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Dinoroseobacter shibae (strain DFL 12) GN=gpmI PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.178e-17
Identity = 71/199 (35.68%), Postives = 94/199 (47.24%), Query Frame = 1
Query:    4 HLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVL--GEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKI-RYAGMLQYDGE 591
            HL+G+ SDGGVH   D +    K  +  G   + LH +TDGRDV   S+  F+  +E  L E       A+I +  GR Y  MDR +N WD V R + A V   GE     ++AV A     E     D+++ P VI    G       DGD +   NFRADR   + +A+   DFD FD    P      GM+ Y  E
Sbjct:  113 HLMGVASDGGVHGHTDHIIAAAKAVAGAGVPVV-LHAITDGRDVAPKSADRFMPALEAALPE------GARIGTVIGRYYA-MDR-DNRWDRVARAFVAMVRAQGETAESAQAAVAAAYGRGE----TDEFIAPTVIGGYAGMR-----DGDGIFCLNFRADRAREILRAMAQPDFDAFDPAGLPDFAAKLGMVSYSDE 293          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_METFK (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=gpmI PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.844e-17
Identity = 60/186 (32.26%), Postives = 98/186 (52.69%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKI 558
            +H++GLLSDGGVHS  D +   ++ A   G +++ +H   DGRD    S+  ++E +E+  A + G     +IAS  GR Y  MDR +  W  V+  ++    G+      SA++ ++    + +  D+++    I     + V  + DGD V+  NFR+DR   L  AL   DF+ F+R R PK+
Sbjct:  111 VHILGLLSDGGVHSHQDHIHATIEMAVNAGVEKVYVHAFLDGRDTPPISAKPYLEKLEQACASIGG----GKIASICGRFY-AMDR-DKRWPRVEAAYNLITDGQGEFASASALQGLEAAYAR-DEKDEFVKATAIAAAGEQPV-TMEDGDVVIFVNFRSDRARQLTHALLDPDFEGFNRRRQPKL 288          
The following BLAST results are available for this feature:
BLAST of CF417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_YERPA9.775e-1833.892,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_NOSP79.775e-1833.172,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_THIDA1.277e-1733.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACV81.277e-1732.842,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_WOLPM1.667e-1734.652,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACTN1.667e-1732.842,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ANTSP1.667e-1728.572,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ROSDO2.178e-1734.542,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_DINSH2.178e-1735.682,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_METFK2.844e-1732.262,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-272 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417342 ID=CF417342; Name=CF417342; organism=Citrus sinensis; type=EST; length=625bp
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGC
GTAGGATTCGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAA
AGGTGTTGACGCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGA
TGGACCGTTATGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCC
CAAGTTCTTGGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGT
CAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCAT
TTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGT
GATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGC
TAAGGCCCTTGAATATGAAGATTTTGACNAATTTGATCGAGTTCGGTTCC
CTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTT
CCCGTCATTACCTTGTGTCTCCTCC
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