CF417342

Overview
NameCF417342
Unique NameCF417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_PARDP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Paracoccus denitrificans (strain Pd 1222) GN=gpmI PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.081e-16
Identity = 64/197 (32.49%), Postives = 98/197 (49.75%), Query Frame = 1
Query:    4 HLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGE---APHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPK-IRYAGMLQY 582
            HL+G++SDGGVH  +  +    +  +++G   + +H++TDGRDV   S++GFV  +  +L E       A+I +  GR Y  MDR +N W+ V R + A V  E   AP   ++  +A  +        D+++ P V+    G       DGD     NFRADR   +  A+   DF  FD  R P+     GM+ Y
Sbjct:  113 HLMGVVSDGGVHGHIQHVIAAARAVTDKGVPVV-IHVVTDGRDVPPQSAMGFVTELLGELPEA------ARIGTVVGRYYA-MDR-DNRWERVARAYAAMVRAEGLPAPDAAQAVADAYAR-----GETDEFIQPTVVEGYAGAK-----DGDGFFCLNFRADRAREILAAIGQPDFSAFDTGRRPEWAALLGMVDY 290          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_CAMJJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=gpmI PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.081e-16
Identity = 68/203 (33.50%), Postives = 110/203 (54.19%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPVI 609
            +H+IGL SDGGVHS     + +L+  ++ G   +  H +TDGRDV   S + F+    KDL E   + +    A+  GR Y  MDR +  WD VK  ++  +LG+A +K  + +E ++K  ++ N  D+++    + +EN K +    + D ++  NFR DRM  L + L  +DF  F+R +  +     M  YD + KLPV+
Sbjct:  106 VHIIGLYSDGGVHSMDTHFKAMLEICAKNG-NEVFAHAITDGRDVNPKSGLNFI----KDLKEFC-ENLGVHFATLCGRFYA-MDR-DKRWDRVKECYEC-LLGKA-YKVPNLLEYLQKSYDE-NVTDEFIK--AVQNENYKGMR---EEDGIIFINFRNDRMKQLVEVLNSKDFKEFEREKIFE-NLLTMSVYDDKFKLPVL 291          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_CAMJE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Campylobacter jejuni GN=gpmI PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.408e-16
Identity = 68/203 (33.50%), Postives = 109/203 (53.69%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPVI 609
            +H+IGL SDGGVHS     + +L+  ++ G   +  H +TDGRDV   S + F+    KDL E   + +    A+  GR Y  MDR +  WD VK  ++  +LG+A +K  + +E ++K  ++ N  D+++      +EN K +    + D ++  NFR DRM  L + L  +DF  F+R +  +     M  YD + KLPV+
Sbjct:  106 VHIIGLYSDGGVHSMDTHFKAMLEICAKNG-NEVFAHAITDGRDVSPKSGLNFI----KDLKEFC-ENLGVHFATLCGRFYA-MDR-DKRWDRVKEYYEC-LLGKA-YKVPNLLEYLQKSYDE-NVTDEFIK--AAQNENYKGMR---EEDGIIFINFRNDRMKQLVEVLNSKDFKEFEREKIFE-NLLTMSVYDDKFKLPVL 291          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_CAMJ8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=gpmI PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.408e-16
Identity = 68/203 (33.50%), Postives = 109/203 (53.69%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPVI 609
            +H+IGL SDGGVHS     + +L+  ++ G   +  H +TDGRDV   S + F+    KDL E   + +    A+  GR Y  MDR +  WD VK  ++  +LG+A +K  + +E ++K  ++ N  D+++      +EN K +    + D ++  NFR DRM  L + L  +DF  F+R +  +     M  YD + KLPV+
Sbjct:  106 VHIIGLYSDGGVHSMDTHFKAMLEICAKNG-NEVFAHAITDGRDVSPKSGLNFI----KDLKEFC-ENLGVHFATLCGRFYA-MDR-DKRWDRVKEYYEC-LLGKA-YKVPNLLEYLQKSYDE-NVTDEFIK--AAQNENYKGMR---EEDGIIFINFRNDRMKQLVEVLNSKDFKEFEREKIFE-NLLTMSVYDDKFKLPVL 291          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SILST (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Silicibacter sp. (strain TM1040) GN=gpmI PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.145e-16
Identity = 63/194 (32.47%), Postives = 98/194 (50.52%), Query Frame = 1
Query:    4 HLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKI-RYAGMLQY 582
            HL+GL+SDGGVH  +  +   +K   + G   + LH +TDGRDV   S++ +++ +E  +A        AQIA+  GR Y  MDR +N W+ V   +DA V G       +A +AV+    +    D+++   V+   +G     I +GD     NFRADR   + +A+    F  FD    P +    GM++Y
Sbjct:  113 HLMGLVSDGGVHGHVTHILAAIKAIRDAGVP-VWLHAITDGRDVAPKSALTYLDQLEAGMAP------GAQIATVTGR-YFAMDR-DNRWERVSEAYDAMVKGAGQFTAATARDAVENAYGRDEL-DEFVKATVVEGFDG-----IKEGDGFFCLNFRADRAREILRAIGEPGFAEFDTGPRPALAALLGMVEY 291          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_HELAH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter acinonychis (strain Sheeba) GN=gpmI PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.145e-16
Identity = 61/203 (30.05%), Postives = 107/203 (52.71%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPVI 609
            +HL+GL+SDGGVHS ++   + L    E+  K++ LH++TDGRDV   S++ ++E ++    E        QIA+  GR Y  MDR +N ++ +K  +++ ++G       S  E ++   ++ N  D+++ P    +  G     + D ++ +  NFR DR   +  AL  ++F+ F R  F K+  A M  YD     P++
Sbjct:  106 VHLMGLMSDGGVHSHIEHF-IALALECEKFHKKVYLHLITDGRDVAPKSALTYLEIMQNICNE------SIQIATMSGRFYA-MDR-DNRFERIKLAYNS-LMGLTDPTPLSPSEYIQSQYDK-NITDEFIMPTCFKNYCG-----MQDDESFIFINFRNDRAREITSALGQKEFNGFKRQVFKKLHIATMTPYDKNFPYPIL 292          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_AGRT5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=gpmI PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.145e-16
Identity = 66/193 (34.20%), Postives = 96/193 (49.74%), Query Frame = 1
Query:    4 HLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQY 582
            HL+ ++SDGGVH  +   Q  +K     G K + +H +TDGRDV   S+  FV  +   L +       A I +  GR Y  MDR +N W+ V++ +DA VLG+  H  + AV AV +       ++  LP  +   E  KA      GD +   NFRADR   +  A+  +DFD F R +       GM++Y
Sbjct:  113 HLMCVVSDGGVHGHILHGQAAVKLMVSHGLKVV-VHAITDGRDVAPQSAEDFVAALVASLPQ------GASIGTVIGRYYA-MDR-DNRWERVEKAYDAMVLGKGEHA-RDAVSAVAQSYANKVTDEFILPTVIDGYEGFKA------GDGLFCLNFRADRAREILLAIGADDFDGFAREKPVLSALLGMVEY 289          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SILPO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Silicibacter pomeroyi GN=gpmI PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 62/194 (31.96%), Postives = 101/194 (52.06%), Query Frame = 1
Query:    4 HLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKI-RYAGMLQY 582
            HL+GL+SDGGVH  L+ +    +  +  G   + +H +TDGRDV   S+ GF+  +E  L +       A+I +  GR Y  +DR +N W+ V+  +DA V GE   +  +A  A+     Q + +D+++   V+   +G     + DGD++   NFRADR   + +A+    F  FD    P +    GM++Y
Sbjct:  113 HLMGLVSDGGVHGHLNHIIAAAQAITNAGVP-VVMHAITDGRDVAPKSAYGFMAELEDRLPK------GARIVTVTGR-YFALDR-DNRWERVQEAYDAMVRGEG-RRVSTAHSAIDYAYNQ-SESDEFITASVLTGYDG-----MRDGDSLFCLNFRADRAREILRAIGEPGFADFDTGARPALSALLGMVEY 290          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_PORPU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Porphyra purpurea GN=gpmI PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 64/203 (31.53%), Postives = 93/203 (45.81%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGW-----DAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGEL 594
            LHLIGL S+GGVHS LD L  L+  A  +    + +H++TDGRD    S+  F++ I    A+   K     I++  GR Y  MDR +  W   K  +     D   +   P  +   ++           +D+++PP  I        G I DGDA++ FNFR DRM  L +AL  + F+ F       +       YD  L
Sbjct:  114 LHLIGLCSNGGVHSHLDHLLALIHVAESKKVPNLYIHLITDGRDTNSNSAKSFIKLI----ADHIEKKSFVIISTISGR-YYAMDR-DFRWSRTKAAYTVLTSDNSDITNQPLNYNDLIDHY----YNKGISDEFIPPSRI------NTGSIKDGDAIIFFNFRPDRMRQLVQALVQKPFNCFLTKSLSHLHVLTFTNYDSSL 300          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_MYCPU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma pulmonis GN=gpmI PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 63/197 (31.98%), Postives = 103/197 (52.28%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKI-RYAGMLQYDG 588
            LHL+GL+S GGVHS  D L  ++  A ++G K++ +H+  DGRDV   S     E +EK   +      +  IAS  GR Y +MDR +  ++  ++ ++A +LG +  KF +  E + K   Q  +++ ++P         K V  + DGD+++ FNFR DR   L   L       F   +  KI ++  M++Y+G
Sbjct:  114 LHLMGLVSPGGVHSLEDHLFEIIDVAYQKGLKKVSVHVFGDGRDVAPRSIKSSFEKLEKITNK-----YNYDIASISGRFY-SMDR-DKIFERTEKAYEA-LLGNSNSKFDNWSEFLNKQYSQEISDEFFIPSI----NASKNVNFVKDGDSIIFFNFRPDRARQLTHLLIGSSLYDFKPKKPVKINKFCSMMKYEG 298          
The following BLAST results are available for this feature:
BLAST of CF417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_PARDP1.081e-1632.492,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CAMJJ1.081e-1633.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CAMJE2.408e-1633.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CAMJ82.408e-1633.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SILST3.145e-1632.472,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HELAH3.145e-1630.052,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_AGRT53.145e-1634.202,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SILPO4.107e-1631.962,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PORPU4.107e-1631.532,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCPU4.107e-1631.982,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-272 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417342 ID=CF417342; Name=CF417342; organism=Citrus sinensis; type=EST; length=625bp
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGC
GTAGGATTCGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAA
AGGTGTTGACGCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGA
TGGACCGTTATGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCC
CAAGTTCTTGGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGT
CAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCAT
TTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGT
GATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGC
TAAGGCCCTTGAATATGAAGATTTTGACNAATTTGATCGAGTTCGGTTCC
CTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTT
CCCGTCATTACCTTGTGTCTCCTCC
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