CF417342

Overview
NameCF417342
Unique NameCF417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_RHOS5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=gpmI PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16
Identity = 70/197 (35.53%), Postives = 96/197 (48.73%), Query Frame = 1
Query:    4 HLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPK-IRYAGMLQYDGE 591
            HL+G++SDGGVH  +  L   ++  +  G   + +H +TDGRDV   S+ GFV+     LAE    G  A I +  GR Y  MDR +  WD VKR  DA + G+   +   AV AV     +    D+++ P VI    G      +DGD     NFRADR   +   L    FD +D  R P    + GM+ Y  E
Sbjct:  113 HLMGVVSDGGVHGHIQHLIAAVEVIAASGVPVV-IHAITDGRDVAPTSAGGFVQ----QLAEALPAG--ASIGTVIGR-YWAMDR-DKRWDRVKRASDAMLHGQG-ERAADAVAAVAAALAR-GETDEFIAPTVIGSYTGA-----MDGDGFFCLNFRADRAREILAGLAQPGFDAYDTGRRPDWSGFLGMVDYSTE 293          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_HELPJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter pylori J99 GN=gpmI PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16
Identity = 61/203 (30.05%), Postives = 107/203 (52.71%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPVI 609
            +HL+GL+SDGGVHS ++   + L    E+  K++ LH++TDGRDV   S++ +++ ++    E      + QIA+  GR Y  MDR +N ++ ++  +++  L    H   S  E ++   ++ N  D+++ P    +  G     + D ++ +  NFR DR   +  AL  ++F+ F R  F K+  A M  YD     PV+
Sbjct:  106 VHLMGLMSDGGVHSHIEHF-IALALECEKSHKKVCLHLITDGRDVAPKSALTYLKQMQNICNE------NIQIATISGRFYA-MDR-DNRFERIELAYNS--LMGLNHTPLSPSEYIQSQYDK-NITDEFIIPACFKNYCG-----MQDDESFIFINFRNDRAREIVSALGQKEFNSFKRQAFKKLHIATMTPYDNSFPYPVL 291          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_TRIEI (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Trichodesmium erythraeum (strain IMS101) GN=gpmI PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.006e-16
Identity = 63/202 (31.19%), Postives = 100/202 (49.50%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LHL+GL S GGVHS ++ L  LL  A  +G   + +H +TDGRD    S +  ++ IE    ++   G+  +IA+  GR Y  MDR +  WD +++ ++  +  +      SA + ++K   +   ++  LP  V       A G +  GD V+ FNFR DR   L +A    DF+ F+R     + +    QYD    + V
Sbjct:  114 LHLVGLCSSGGVHSHVNHLLGLLDVAKAKGISDVCVHAITDGRDTNPKSGLHVLKQIEYHTNQI---GI-GRIATVSGR-YYAMDR-DKRWDRIQKAYEV-MTQDGYGTGCSASDLLQKSYAEGITDEFVLPVRV-------APGAVEPGDGVIFFNFRPDRARQLTQAFVAPDFNGFERQTIQPLTFLTFTQYDSSFPVLV 301          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_RHOPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodopseudomonas palustris GN=gpmI PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.006e-16
Identity = 71/198 (35.86%), Postives = 96/198 (48.48%), Query Frame = 1
Query:    4 HLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKI-RYAGMLQYDGEL 594
            HL+GL+S GGVHS  D    L K  ++ G K + LH  TDGRD    S+V  +  +  +L        +  IA+  GR Y  MDR +N W+ V + +      + P +F  A  AV         ND+++ P VI D  G       DGD V+ FNFRADR+  +  AL    F  F R +  +I   AGM QY   L
Sbjct:  113 HLMGLVSPGGVHSLQDHACALAKILAKAGVKTV-LHAFTDGRDTPPKSAVDDIVRLRAELPP------NVPIATVSGRYYA-MDR-DNRWERVSKAYGVIADADGP-RFADA-NAVIADGYAAGVNDEFIVPAVIGDYQGMR-----DGDGVLCFNFRADRVREILAALLDSAFAGFPRKQVKQIAAAAGMTQYSTAL 294          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_CAMJR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Campylobacter jejuni (strain RM1221) GN=gpmI PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.149e-16
Identity = 67/203 (33.00%), Postives = 108/203 (53.20%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPVI 609
            +H+IGL SDGGVHS     + +L+  ++ G   +  H +TDGRDV   S + F++ + K   E  G       A+  GR Y  MDR +  WD VK  ++  +LG+A +K  + +E ++K  ++ N  D+++      +EN K +    + D ++  NFR DRM  L + L  +DF  F+R +  +     M  YD + KLPV+
Sbjct:  106 VHIIGLYSDGGVHSMDTHFKAMLEICAKNG-NEVFAHAITDGRDVSPKSGLNFIKDL-KGFCENLG----VHFATLCGRFYA-MDR-DKRWDRVKEYYEC-LLGKA-YKVPNLLEYLQKSYDE-NVTDEFIK--AAQNENYKGMR---EEDGIIFINFRNDRMKQLVEVLNSKDFKEFEREKIFE-NLLTMSVYDDKFKLPVL 291          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_WOLSU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Wolinella succinogenes GN=gpmI PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.195e-15
Identity = 64/206 (31.07%), Postives = 95/206 (46.12%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVE---TIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPVI 609
            +HL GL SDGGVHS ++ L  L +  S  G + + LH++TDGRDV   SS  F+     +E DL +         IA+  GR Y  MDR +  WD +KR +     G++P       +   + + Q    D+++ P  +    G         D  V  NFR+DR   +  AL    F+ FDR  +   +   M  YD     P++
Sbjct:  106 IHLAGLASDGGVHSHMEHLLGLAQIFSRLGHE-VLLHLITDGRDVSPTSSKEFIAQALALESDLIK---------IATISGRYYA-MDR-DKRWDRIKRAFGVIARGDSPTSLTP--QEYIQAQYQAGITDEFIEPAALGGYQG-----FEPSDGFVFANFRSDRAREIVSALGGASFEGFDRGAYQPPKTLAMTSYDDSFPFPIL 292          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_HALSA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Halobacterium salinarium GN=gpmI PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.195e-15
Identity = 72/207 (34.78%), Postives = 103/207 (49.76%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGE-APHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKAL---EYEDFDXFD-RVRFPKIRYAGMLQYDGELKLPV 606
            LH++GL+SDGGVH+    +  L++ A+ RG +   +H  TDGRD        ++  +E  +A+  G G    +AS  GR Y  MDR +N W   KR +DA    +   H   +AV+AV    E+ +  D+++ P  I  E G A+    DGDAVV  NFRADR   L + L      D+D        P +    M +YD     PV
Sbjct:  108 LHVMGLVSDGGVHADQQHIHALVECAAGRGVE-AAVHAFTDGRDTSPTGGEDYLADLEA-VADEHGTG---DVASVSGR-YYAMDRDQN-WARTKRAYDAITRSDGVAHHAAAAVDAVTDSYERGD-TDEFVEPTTI--EGGAALS---DGDAVVFANFRADRARQLTRLLADIHPADWDADGIETNPPAVPVVTMTEYDETFDCPV 301          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_CAMJD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=gpmI PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.195e-15
Identity = 67/203 (33.00%), Postives = 109/203 (53.69%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPVI 609
            +H+IGL SDGGVHS     + +L+  ++ G   +  H +TDGRDV   S + F++ + K   E  G       A+  GR Y +MDR +  WD VK  ++  +LG+A +K  + +E ++K  ++ N  D+++      +EN K +    + D ++  NFR DRM  L + L  +DF  F+R +  +     M  YD + KLPV+
Sbjct:  106 VHIIGLYSDGGVHSMDTHFKAMLEICAKNG-NEVFAHAITDGRDVSPKSGLNFIKDL-KGFCENLG----VHFATLCGRFY-SMDR-DKRWDRVKEYYEC-LLGKA-YKVPNLLEYLQKSYDE-NITDEFIK--ATQNENYKGMR---EEDGIIFINFRNDRMKQLVEVLNSKDFKEFEREKVFE-NLLTMSVYDDKFKLPVL 291          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_GLUOX (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Gluconobacter oxydans GN=gpmI PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.038e-15
Identity = 67/200 (33.50%), Postives = 99/200 (49.50%), Query Frame = 1
Query:    4 HLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYA---GMLQYDGEL 594
            HL+GL+S GGVH+  D +  L K  S  G   + +HI +DGRD    S   F+    K+L +        QIA+  GR Y  MDR +  W+ V    +A    + PH  K A+ A++      +  D+++ P V+ D  G     + DGD ++  NFRADR+  L   L   DF  +D  R  K+++A   GM +Y   L
Sbjct:  116 HLMGLISPGGVHAHQDHVVALTKIVSAAGVP-VAVHIFSDGRDTAPRSGEDFIGKFLKELPD------SVQIATLSGRYYA-MDR-DRRWERVALAVEAIRDAKGPHA-KDALSALQASYAS-DKGDEFVLPTVLGDYAG-----MKDGDGILACNFRADRIRQLLDVLVLPDFTEYDSGR--KVKFAAVCGMSRYSDHL 297          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_STRCO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Streptomyces coelicolor GN=gpmI PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.662e-15
Identity = 64/203 (31.53%), Postives = 96/203 (47.29%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPVI 609
            LHLIGL SDG +H+ ++ L  LL  A+    +R+ +H +TDGRDV D +   ++  +    AEL       QIA+  GR Y  MD+   D D+ +R       G       S  ++           D+++P  V+  E G A   + DGDAV+ FNFR+DR+   A  L +E      R     +    + QYD    +P +
Sbjct:  117 LHLIGLCSDGQIHAHVEHLSELLAAAATHQVERVFIHAITDGRDVADHTGEAYLTRV----AELAAAAGTGQIATVIGRGY-AMDK-AGDLDLTERAVALVADGRG-----SPADSAHSAVHSSERGDEWVPASVLT-EAGDA--RVADGDAVLWFNFRSDRIQQFADRL-HEHLTASGRT----VNMVSLAQYDTRTAIPAL 300          
The following BLAST results are available for this feature:
BLAST of CF417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_RHOS55.364e-1635.532,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HELPJ5.364e-1630.052,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_TRIEI7.006e-1631.192,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOPA7.006e-1635.862,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CAMJR9.149e-1633.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_WOLSU1.195e-1531.072,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HALSA1.195e-1534.782,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CAMJD1.195e-1533.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GLUOX2.038e-1533.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_STRCO2.662e-1531.532,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-272 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417342 ID=CF417342; Name=CF417342; organism=Citrus sinensis; type=EST; length=625bp
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGC
GTAGGATTCGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAA
AGGTGTTGACGCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGA
TGGACCGTTATGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCC
CAAGTTCTTGGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGT
CAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCAT
TTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGT
GATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGC
TAAGGCCCTTGAATATGAAGATTTTGACNAATTTGATCGAGTTCGGTTCC
CTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTT
CCCGTCATTACCTTGTGTCTCCTCC
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