CF417342

Overview
NameCF417342
Unique NameCF417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_THEEB (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Thermosynechococcus elongatus (strain BP-1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.477e-15
Identity = 64/202 (31.68%), Postives = 95/202 (47.03%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LH IGL S GGVHS +D L  L++ A   G     +H++TDGRD     + G +E +E+ L +  G G   +I +  GR Y  MDR +  W+  +  +      E     + AV+  ++   Q +  D+++ P  I      A G +  GD VV FNFR DR   L +A    +F  F+R     + +    QYD      V
Sbjct:  114 LHFIGLCSAGGVHSHIDHLYGLVELAKRHGLPAC-IHVITDGRDTPPRDAAGVLEELEQRL-KTSGCG---RIVTVSGRYYA-MDR-DRRWERTEAAYRVMTSNEHIQPLR-AVDVARQSYAQ-DIGDEFIVPTRI------AAGAVEPGDGVVFFNFRPDRARQLTQAFIDPNFSGFERALITPLDFVTFTQYDASFNCGV 300          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_MYCMO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma mobile GN=gpmI PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.477e-15
Identity = 63/199 (31.66%), Postives = 101/199 (50.75%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDA--QVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKI-RYAGMLQYDG 588
            LHL+GLLSDGGVHS  + L  L++ A E G K + +H+  DGRDV   S +  ++ +E        K  +  I S  GR Y  MDR +    +  R   A   ++G+  + F +A E + K + Q + +D++  P +  D   K +  + D DAV+ +NFR DR   L+  L   +   +      K+  +  M++Y+G
Sbjct:  112 LHLMGLLSDGGVHSHEEHLFKLIEAAHENGLKNVSVHVFGDGRDVAPRSILTSIKKLEAIT-----KKYNYAIGSIMGRFY-AMDRDQ----IFTRNEQALEVMMGKTTNYFTNASEYI-KAQYQKDISDEFFIPAINKDYLAKKLN-LKDNDAVIFYNFRPDRARQLSHLLIQSNLYNYQSKNQVKLSNFTSMMKYEG 298          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_HELPH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter pylori (strain HPAG1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.477e-15
Identity = 60/203 (29.56%), Postives = 104/203 (51.23%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPVI 609
            +HL+GL+SDGGVHS ++   + L    E+  K++ LH++TDGRDV   S++ +++ ++    E      + QIA+  GR Y  MDR +  ++ ++  + +  L    H   S  E ++   ++ N  D+++ P    +  G     + D ++ +  NFR DR   +  AL  ++F  F R  F K+  A M  YD     PV+
Sbjct:  106 VHLMGLMSDGGVHSHIEHF-IALALECEKSHKKVCLHLITDGRDVAPKSALTYLKQMQNICNE------NIQIATISGRFYA-MDR-DKRFERIELAYHS--LMGLNHTPLSPSEYIQSQYDK-NITDEFITPACFKNYYG-----MQDDESFIFINFRNDRAREIVSALGQKEFSGFKRQAFKKLHIATMTPYDNTFPYPVL 291          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_PORYE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Porphyra yezoensis GN=gpmI PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 61/204 (29.90%), Postives = 96/204 (47.06%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPN--ANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LHLIGL S+GGVHS +D L  L+  A  +    + LH++TDGRD    S+  F++ +   +   +     A I++  GR Y  MDR +  W   +  ++  +      K  ++V     +    N   +D+++PP  I       +G I D DA+V FNFR DRM  + +A   + F+ F       +R      YD  L   +
Sbjct:  114 LHLIGLCSNGGVHSHIDHLLALIDLADSKQVTNLYLHLITDGRDTSSNSAKYFIKIVADHIEHKQ----FATISTISGR-YYAMDR-DFRWSRTQAAYNI-LTSNNSIKLNASVNYGDLIDHYYNKGISDEFIPPSRI------NLGSIKDNDAIVFFNFRPDRMRQIVQAFVQKPFNCFATKPLYNLRVVTFTNYDTSLNTTI 304          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_MYCS5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma synoviae (strain 53) GN=gpmI PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.541e-15
Identity = 67/197 (34.01%), Postives = 105/197 (53.30%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIR-YAGMLQYDG 588
            LHL+GLLS GGVHS    L  +LK A   G + + +H+  DGRDV   S     E++EK L EL  K    +IA+  GR Y +MDR +  +D  ++ + A +LG++ ++F SA+E +  L+   N  D++L P      + +    + D DAV+ FNFR DR   L+  +       +      K+  +  M++Y+G
Sbjct:  109 LHLMGLLSPGGVHSLEAHLFEILKQAHNSGVENVAVHVFGDGRDVAPKS---IRESLEK-LQELVDK-YGYKIATISGRFY-SMDR-DKMFDRTEKAYKA-ILGKSGNEFSSALEYL-DLQYSQNITDEFLEPAKNSTLDSRYF--LKDNDAVIFFNFRPDRARQLSHLILNSSLYDYQPSHLVKVSDFVSMMKYEG 294          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_AYWBP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=gpmI PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.321e-14
Identity = 59/171 (34.50%), Postives = 84/171 (49.12%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERG-AKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKAL 510
            +HL+GL+SDGG+HS LD  + L     E   A    LH  TDGRD    S + +++ +               IAS  GR Y  +DR +N+WD +   ++     +AP    S  + ++    Q    D+++ PF I D NG     I D DAV+  NFR DR + LA AL
Sbjct:  111 IHLLGLISDGGIHSHLDHFKALFDLLKENNLANNTFLHAFTDGRDTGTHSGINYIKNL---------LDYGFNIASVAGR-YYALDR-DNNWDRINLVYNMLTSKQAPVITLSLEKTMQNFYNQ-GITDEFITPF-ITDPNGL----IDDNDAVIFVNFRPDRAMRLATAL 264          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_MYCMS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma mycoides subsp. mycoides SC GN=gpmI PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.726e-14
Identity = 58/210 (27.62%), Postives = 99/210 (47.14%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRF-------PKIRYAGMLQYDGELKLPVI 609
            LHL+GL S+GGVHS  D +  + K A + G   I+  ++TDGRD     +  F+    KDL EL  +  +  I S     Y  MDR +  +D  +  ++A V       F + ++ +++     + ++  +P F   D NG     +   DA++  NFR DR + ++  L  +++  +    F        KIR+  M++Y   +  P I
Sbjct:  112 LHLMGLFSNGGVHSHFDHMIAIYKAAIDYGITNIKFDLITDGRDTKPKLAYDFI----KDLLELIKQNNNIGIISSISGRYYAMDR-DKRFDRSRIAYNAIVNRNNVRSFTNILDYIQQEYMINHDDEMIIPAFNQDDLNGN----LKANDAIIMTNFRPDRAIQISSILTNKNYIAWQNEAFSDAEFIGDKIRFVSMMKYSDSVTSPHI 312          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_WOLTR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=gpmI PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.254e-14
Identity = 65/206 (31.55%), Postives = 98/206 (47.57%), Query Frame = 1
Query:    4 HLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKAL----EYEDFDXFDRVRFPKIRYAGMLQYDGELKLPVI 609
            H++GL+SDGGVHS    +  L    S+   K + +H   DGRD L  S    V+  E+++     KG D +IA+  GR Y  MDR +N W+     ++A     A     + V ++     Q N  D+++ P VI D  G     I   D V+  NFRADRM+ LA  L     Y +   F  +         M++Y  +L++P +
Sbjct:  111 HIMGLVSDGGVHSHQKHISTLANKISQHEIK-VVIHAFLDGRDTLPNSGKKCVQEFEENI-----KGNDIRIATVSGR-YYAMDR-DNRWERTIETYEAIAFARA--TCHNNVMSLIDNNYQNNITDEFIRPTVIGDYKG-----IELKDGVLLANFRADRMIQLASILLGKTGYTEVAKFSSI-------LSMMKYKEDLQIPCL 294          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_HELPY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter pylori GN=gpmI PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.254e-14
Identity = 60/203 (29.56%), Postives = 102/203 (50.25%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPVI 609
            +HL+GL+SDGGVHS ++   + L    E+  K++ LH++TDGRDV   S++ +++ ++    E        QIA+  GR Y  MDR +  ++ ++  + +  L    H   S  E ++   ++ N  D+++ P    +  G     + D ++ +  NFR DR   +  AL  + F  F R  F K+  A M  YD     PV+
Sbjct:  106 VHLMGLMSDGGVHSHIEHF-IALALECEKSHKKVCLHLITDGRDVAPKSALTYLKQMQNICNE------SIQIATISGRFYA-MDR-DKRFERIELAYHS--LMGLNHTPLSPSEYIQSQYDK-NITDEFIMPACFKNYCG-----MQDDESFIFINFRNDRAREIVSALGQKQFSGFKRQVFKKLHIATMTPYDNTFPYPVL 291          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_GRATL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Gracilaria tenuistipitata var. liui GN=gpmI PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.844e-14
Identity = 65/205 (31.71%), Postives = 92/205 (44.88%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDA---QVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LHLIGL S+GGVHS +  L  LL  A  R   +I +H +TDGRD     S  F+E I   + +         I +  GR Y +MDR +  W   ++ ++      LG          E  KK     N +D+++PP  +        G I + D ++ FNFR DRM  L  A     F  F+   F  +    + QYD  L + V
Sbjct:  109 LHLIGLCSNGGVHSHIKHLFALLDIAM-RYKIQICIHAITDGRDTSPYGSKIFIEEINNQIQQFN----HINICTISGRYY-SMDR-DCRWARTEKSYNTLLKNTLGFTKDPILMINEYYKK-----NISDEFIPPTRLHK------GSIENNDGIIFFNFRPDRMRQLVHAFTKSTFKGFNTTSFHNLEILTLTQYDPSLDIEV 295          
The following BLAST results are available for this feature:
BLAST of CF417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_THEEB3.477e-1531.682,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCMO3.477e-1531.662,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HELPH3.477e-1529.562,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PORYE4.541e-1529.902,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCS54.541e-1534.012,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_AYWBP1.321e-1434.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCMS1.726e-1427.622,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_WOLTR2.254e-1431.552,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HELPY2.254e-1429.562,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GRATL3.844e-1431.712,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-272 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417342 ID=CF417342; Name=CF417342; organism=Citrus sinensis; type=EST; length=625bp
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGC
GTAGGATTCGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAA
AGGTGTTGACGCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGA
TGGACCGTTATGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCC
CAAGTTCTTGGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGT
CAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCAT
TTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGT
GATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGC
TAAGGCCCTTGAATATGAAGATTTTGACNAATTTGATCGAGTTCGGTTCC
CTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTT
CCCGTCATTACCTTGTGTCTCCTCC
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