CF417342

Overview
NameCF417342
Unique NameCF417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_MYCHJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.020e-14
Identity = 59/197 (29.95%), Postives = 101/197 (51.27%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYED-FDXFDRVRFPKIRYAGMLQYDG 588
            L ++GL S GGVHS  D L  L+  A+  G K++ LH+  DGRDV   S   +++ +   L        D +IAS  GR Y +MDR +  +D V+ G++A +LG+A + F   ++ +   + +   +D++  P + +  N K    + D   V+ FNFR DR   L+  +   D ++   +       +  M++Y+G
Sbjct:  110 LQIMGLFSPGGVHSHQDHLFALIDFAANFGVKKLNLHLFGDGRDVGPKSIKPWIKMLNLKLKNYE----DYKIASISGRFY-SMDR-DKMFDRVELGYNA-LLGKAENTFTDPIDYI-NFQYEKGVSDEFFEPAINLKVNKKDF--LADDHPVIFFNFRPDRARQLSHLILQTDLYEQKPKNPIKTDVFVSMMKYEG 296          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_RHOSK (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.557e-14
Identity = 66/199 (33.17%), Postives = 95/199 (47.74%), Query Frame = 1
Query:    4 HLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQV--LGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPK-IRYAGMLQYDGE 591
            HL+G++SDGGVH  +  L   ++  +  G   + +H +TDGRDV   S+  FV  + + L E+      A++ +  GR Y  MDR +  WD VKR  DA +   GE     ++AV A     E     D+++ P V+ D  G       DGD     NFRADR   +   L    FD +D    P    + GM+ Y  E
Sbjct:  113 HLMGVVSDGGVHGHIQHLISAVEVLAGEGIP-VVIHAITDGRDVAPTSAGEFVGQLVRVLPEV------ARVGTVIGR-YWAMDR-DKRWDRVKRASDAMLHATGEHAPDAEAAVAAALARGE----TDEFIAPTVVGDYAGAR-----DGDGFFCLNFRADRAREILAGLGQPGFDSYDTGTRPDWSAFLGMVDYSKE 293          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_RHOS4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.557e-14
Identity = 67/199 (33.67%), Postives = 94/199 (47.24%), Query Frame = 1
Query:    4 HLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQV--LGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPK-IRYAGMLQYDGE 591
            HL+G++SDGGVH  +  L   ++  +  G   + +H +TDGRDV   S+  FV  + + L E       A+I +  GR Y  MDR +  WD VKR  DA +   GE     ++AV A     E     D+++ P V+ D  G       DGD     NFRADR   +   L    FD +D    P    + GM+ Y  E
Sbjct:  113 HLMGVVSDGGVHGHIQHLISAVEVLAGEGIP-VVIHAITDGRDVAPTSAGEFVGQLVRVLPE------GARIGTVIGR-YWAMDR-DKRWDRVKRASDAMLHATGEHAPDAEAAVAAALARGE----TDEFIAPTVVGDYAGAR-----DGDGFFCLNFRADRAREILAGLAQPGFDAYDTGARPDWSAFLGMVDYSKE 293          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_MYCPE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma penetrans GN=gpmI PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 6.557e-14
Identity = 64/200 (32.00%), Postives = 102/200 (51.00%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAK----ALEYEDFDXFDRVRFPKIRYAGMLQYDG 588
            +H++GLLS GGVHS    +  +++  SE G K + +H+  DGRDV   S +  +E +   L +  G      IA+  GR Y +MDR +  W+  K+ +D  +LG + + F + ++ V K +   N  D++L P  I D N      I D DAV+  NFR DR   ++     +  YE+ +         + YA M+ Y+G
Sbjct:  111 IHIMGLLSPGGVHSNEQHIFEMIRIVSENGLKPV-IHVFGDGRDVAPQSIISSLERLNDVLKKYPG-----TIATISGRFY-SMDR-DKRWERTKQAYD-NLLGISNNYFDNPIDYVNK-QYSENIFDEFLVPARINDSN----VVIKDNDAVIHANFRPDRARQISHLFCGSTVYEEKNDHP---LKNLYYAIMMTYEG 293          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_RHOBA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodopirellula baltica GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14
Identity = 68/217 (31.34%), Postives = 102/217 (47.00%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERG--AKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNAN----DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDF-------DXFDR-VRFPKIRYAGMLQYDGELKLPVI 609
            LHL+GL+SDG VHS L     ++  A   G    ++ +H +TDGRD      + FV  +  D  E  G GV   +AS  GR Y  MDR +  W+ V+  ++    G     F SA  A++     P  +    D+++    IV E G  +  +  GDAV+  N+R DR   + KA  ++D          FDR  +   + +A M  Y+  L + VI
Sbjct:  122 LHLLGLMSDGRVHSDLQHGIAVIDLAKRNGLTGDQLAIHAITDGRDTSPRGGLKFVSQL-TDHCEASGVGV---VASVIGRFY-AMDR-DLRWERVEAAYNLMTQGTG-QTFPSASAAIESYYANPTESSRDGDEFITASSIVPEGGSPI-TVQPGDAVLFMNYRGDRTREITKAFTFDDAAWKDIPGGGFDRGKKIDNLYFATMTGYETGLPVKVI 330          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_ANAPZ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Anaplasma phagocytophilum (strain HZ) GN=gpmI PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.564e-14
Identity = 63/200 (31.50%), Postives = 103/200 (51.50%), Query Frame = 1
Query:    4 HLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKI-RYAGMLQYDGELKL 600
            H+IGLLSDGGVHS    ++ +++  +  G K + +H++ DGRDV   S+  ++  +   +  L     +A+IA+  GR Y  MDR +N  D   + +DA      P +  SA+EA++K        D+++ P VI D +G         D V+  NFR DR++ L   L +         RFP++    GM QY  ++++
Sbjct:  110 HMIGLLSDGGVHSLQAHMETIIEVITGFGIK-VFIHVILDGRDVPPRSAEKYIGMLNAKIEHL-----NAEIATVAGR-YYAMDR-DNRLDRTCKAYDAIAYATGP-RSGSAMEALEK-SYNSGVTDEFMVPTVIGDYDGMGA-----EDGVLFTNFRNDRVLQLLGMLLH---------RFPEVSNVLGMRQYSEKMRI 285          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_ONYPE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Onion yellows phytoplasma GN=gpmI PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.461e-13
Identity = 59/171 (34.50%), Postives = 85/171 (49.71%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERG-AKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKAL 510
            +HL+GL+SDGG+HS LD  + L     E   A    LH  TDGRD    S + ++    KDL +         IAS  GR Y  +DR +N+W+ +   ++     +AP       + ++    Q    D+++ PF I + NG     I D DAV+  NFR DR + LA AL
Sbjct:  111 MHLLGLISDGGIHSHLDHFKALFDLLKENNLANNTFLHAFTDGRDTSPHSGINYI----KDLLD-----YGFNIASVVGR-YYALDR-DNNWNRINLVYNMLTSKQAPVIDLPLEDTIQNFYNQ-GITDEFITPF-ITNPNGL----INDNDAVIFVNFRPDRAMRLATAL 264          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_MYCH2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma hyopneumoniae (strain 232) GN=gpmI PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.461e-13
Identity = 59/197 (29.95%), Postives = 101/197 (51.27%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYED-FDXFDRVRFPKIRYAGMLQYDG 588
            L ++GL S GGVHS  D L  L+  A+  G K++ LH+  DGRDV   S   +++ +   L        + +IAS  GR Y +MDR +  +D V+ G++A +LG+A + F   ++ V   + +   +D++  P + +  N K    + D   V+ FNFR DR   L+  +   D ++   +       +  M++Y+G
Sbjct:  117 LQIMGLFSPGGVHSHQDHLFALIDFAANFGVKKLNLHLFGDGRDVGPKSIKPWIKMLNLKLKNYE----NYKIASISGRFY-SMDR-DKMFDRVELGYNA-LLGKAENTFTDPIDYV-NFQYEKGVSDEFFEPAINLKVNKKDF--LADDHPVIFFNFRPDRARQLSHLILQTDLYEQKPKNPIKTDVFVSMMKYEG 303          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_MYCCT (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 27343 / NCTC 10154) GN=gpmI PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.461e-13
Identity = 58/210 (27.62%), Postives = 99/210 (47.14%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDF-----DXFDRVRF--PKIRYAGMLQYDGELKLPVI 609
            LHL+GL S+GGVHS  D +  + K A   G   I+  ++TDGRD     +  F+    K+L EL  +  +  I S     Y  MDR +  +D  +  ++A V       F + ++ +++     + ++  +P F   D NG     +   DA++  NFR DR + ++  L  +++     + F    F   KIR+  M++Y   +  P I
Sbjct:  112 LHLMGLFSNGGVHSHFDHMIAIYKAAIVYGITNIKFDLITDGRDTKPKLAYDFI----KNLLELIKQNNNIGIISSVSGRYYAMDR-DKRFDRSRIAYNAIVNRNNVRSFTNILDYIQQEYMINHDDEMIIPAFNQDDFNGN----LKANDAIIMTNFRPDRAIQISSILTNKNYIAWQSEAFSDAEFIGDKIRFVSMMKYSDSVTSPHI 312          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_MYCH7 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma hyopneumoniae (strain 7448) GN=gpmI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.908e-13
Identity = 58/197 (29.44%), Postives = 101/197 (51.27%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYED-FDXFDRVRFPKIRYAGMLQYDG 588
            L ++GL S GGVHS  D L  L+  A+  G K++ LH+  DGRDV   S   +++ +   L        + +IAS  GR Y +MDR +  +D V+ G++A +LG+A + F   ++ +   + +   +D++  P + +  N K    + D   V+ FNFR DR   L+  +   D ++   +       +  M++Y+G
Sbjct:  110 LQIMGLFSPGGVHSHQDHLFALIDFAANFGVKKLNLHLFGDGRDVGPKSIKPWIKMLNLKLKNYE----NYKIASISGRFY-SMDR-DKMFDRVELGYNA-LLGKAENTFTDPIDYI-NFQYEKGVSDEFFEPAINLKVNKKDF--LADDHPVIFFNFRPDRARQLSHLILQTDLYEQKPKNPIKTDVFVSMMKYEG 296          
The following BLAST results are available for this feature:
BLAST of CF417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_MYCHJ5.020e-1429.952,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOSK6.557e-1433.172,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOS46.557e-1433.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCPE6.557e-1432.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_RHOBA8.564e-1431.342,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ANAPZ8.564e-1431.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ONYPE1.461e-1334.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCH21.461e-1329.952,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCCT1.461e-1327.622,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCH71.908e-1329.442,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-272 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417342 ID=CF417342; Name=CF417342; organism=Citrus sinensis; type=EST; length=625bp
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGC
GTAGGATTCGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAA
AGGTGTTGACGCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGA
TGGACCGTTATGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCC
CAAGTTCTTGGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGT
CAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCAT
TTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGT
GATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGC
TAAGGCCCTTGAATATGAAGATTTTGACNAATTTGATCGAGTTCGGTTCC
CTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTT
CCCGTCATTACCTTGTGTCTCCTCC
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