CF417342

Overview
NameCF417342
Unique NameCF417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12501 contig Csv1_Contig12501:464..1089. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_RHOS1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=gpmI PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.492e-13
Identity = 66/199 (33.17%), Postives = 94/199 (47.24%), Query Frame = 1
Query:    4 HLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQV--LGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPK-IRYAGMLQYDGE 591
            HL+G++SDGGVH  +  L   ++  +  G   + +H +TDGRDV   S+  FV  + + L E       A+I +  GR Y  MDR +  WD VKR  DA +   GE     ++AV A     E     D+++ P V+ D  G       DGD     NFRADR   +   L    FD ++    P    + GM+ Y  E
Sbjct:  113 HLMGVVSDGGVHGHIQHLISAVEVLAGEGIP-VVIHAITDGRDVAPTSAGEFVGQLVRVLPE------GARIGTVIGR-YWAMDR-DKRWDRVKRASDAMLHATGEHAPDAEAAVAAALARGE----TDEFIAPTVVGDYAGAR-----DGDGFFCLNFRADRAREILAGLGQPGFDAYETGTRPDWSAFLGMVDYSKE 293          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_MYCPN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma pneumoniae GN=gpmI PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12
Identity = 65/201 (32.34%), Postives = 98/201 (48.76%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENG---KAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXF--DRVRFPKIRYAGMLQYDG 588
            LHLIGL S GGVHS +D L  L+K A+ +   ++ LH+  DGRDV   +    +E     L +      +  I + GGR Y  MDR +  WD  +  ++A +LG +   F   V  V+   +Q    D++L P V    NG   K    + D D+V+ FNFR DR   ++  L   D+  +     R   + +  M+ Y+G
Sbjct:  110 LHLIGLFSHGGVHSHMDHLYALIKLAAPQ--VKMVLHLFGDGRDVAPCTMKSDLEAFMVFLKDYH----NVIIGTLGGR-YYGMDR-DQRWDREEIAYNA-ILGNSKASFTDPVAYVQSAYDQ-KVTDEFLYPAV----NGNVDKEQFALKDHDSVIFFNFRPDRARQMSHMLFQTDYYDYTPKAGRKYNLFFVTMMNYEG 296          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_MYCHP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma hominis (strain ATCC 23114 / IFO 14850 / NCTC 10111 / PG21) GN=gpmI PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.046e-11
Identity = 56/168 (33.33%), Postives = 93/168 (55.36%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIV-DGDAVVTFNFRADRMVMLA 501
            LH++GLLS+GGVHS    L  +LK A  +G K + +H+  DGRDV   S    +ET+ KDL +  G     +I+S  GR Y  MDR ++ +   +  +DA +LG++ +  ++  + ++  + +    D++  P  + D      G  V +GD+++ FNFR DR   L+
Sbjct:  109 LHVMGLLSNGGVHSLDLHLFEILKLAHSKGLKNVSVHVFGDGRDVKPQSIKNSLETL-KDLCQKFG----YKISSISGRFY-AMDR-DSIFSRNQEAYDA-ILGQSKNVIENIDDYIES-QYKKGIFDEFFEPAQLKD------GVFVKNGDSIIFFNFRPDRARQLS 261          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_MESFL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mesoplasma florum GN=gpmI PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.046e-11
Identity = 55/195 (28.21%), Postives = 92/195 (47.18%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMD---RYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPF--VIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAG 570
            LHL+GL SDGGVHS ++ +  + K A + G   I+  ++TDGRD     +  ++  +   L  ++      +IAS  GR Y  MD   R+E          + +V  + P KF   +E VK   E    ++  +P +   +VD   KA       DA++  NFR DR + +A  +   ++  ++   F  + + G
Sbjct:  112 LHLMGLFSDGGVHSHMNHMISMYKAAVKFGLTNIKFDLITDGRDTAPKVAEQYINQL---LQVIKDNNNIGEIASISGR-YFAMDRDKRFERSAAAYITMTERKV--DQP-KFTDPIEYVKAAYENGLDDEMIVPAYNASVVDSELKA------NDAMIFTNFRPDRAIQMASIMTNNNYPAWNDEAFKDVEFIG 293          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_ANAMM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Anaplasma marginale (strain St. Maries) GN=gpmI PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.195e-11
Identity = 55/200 (27.50%), Postives = 97/200 (48.50%), Query Frame = 1
Query:    4 HLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLP 603
            H++GLLSDGGVH   D +  L +  +E   K + +H   DGRDV   S+   V  +   +        D  IA+  GR Y  MDR ++  D  ++ ++A  L   P +++ A+ A++    +   +D++L P VI D  G         D ++  NFR+DR+V +   + +   +  +          GM++Y  ++++P
Sbjct:  110 HIMGLLSDGGVHGLQDHITQLARVLAELRIK-VLIHAFLDGRDVSPRSAKKHVTALNDAV-----HSYDISIATISGR-YYAMDR-DHRLDRTEKAYEAIALARGP-RYRDAMTAIESSYSE-GISDEFLVPSVIGDYQG-----FSPKDGILLTNFRSDRIVQILSMILHRSQEVSN--------ILGMVRYSEKIQVP 286          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_MYCGA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma gallisepticum GN=gpmI PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.785e-11
Identity = 55/197 (27.92%), Postives = 97/197 (49.24%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYED-FDXFDRVRFPKIRYAGMLQYDG 588
            LH++GL+S+GGVHS ++ +  +++ A++     I LHI  DGRDV     +  ++ + K     + +    +I +  GR Y  MDR +  WD +   ++  +L      F      VK   +Q N  D+++ P    +     +  I D D+VV  NFR DR   L+  +   + +D   ++R   + +  M+QY+G
Sbjct:  109 LHILGLVSNGGVHSHINHIYAIMELANQHNVPAI-LHIFGDGRDVPPTQLLADLDQLIK-----KAETTKTKIGTISGRFY-AMDR-DQRWDRIDLAYN-NLLSNTGKSFADLKTYVKDSYQQ-NITDEFIVPAYNNNYKSDEI-TIQDNDSVVFANFRPDRARQLSHYVFGSNYYDHHPQLRRKNLYFVIMMQYEG 294          
The following BLAST results are available for this feature:
BLAST of CF417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_RHOS12.492e-1333.172,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCPN4.699e-1232.342,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCHP3.046e-1133.332,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MESFL3.046e-1128.212,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ANAMM5.195e-1127.502,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCGA6.785e-1127.922,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-272 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417342 ID=CF417342; Name=CF417342; organism=Citrus sinensis; type=EST; length=625bp
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGC
GTAGGATTCGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAA
AGGTGTTGACGCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGA
TGGACCGTTATGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCC
CAAGTTCTTGGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGT
CAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCAT
TTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGT
GATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGC
TAAGGCCCTTGAATATGAAGATTTTGACNAATTTGATCGAGTTCGGTTCC
CTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTT
CCCGTCATTACCTTGTGTCTCCTCC
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