CF417342

Overview
NameCF417342
Unique NameCF417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SHELP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.821e-27
Identity = 76/202 (37.62%), Postives = 115/202 (56.93%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS    +Q + K A  RGAK++ LH   DGRD    S+ G ++   +  AEL G G   +IAS  GR Y  MDR +N WD V + ++    G+A H ++ AVEA+     + + ND+++    I D +G+ V  + D DA++  NFRADR   + ++     FD F+R   PKI +  + +Y  ++K PV
Sbjct:  113 VHIMGLLSPGGVHSHESHIQAMCKMAVARGAKQVYLHAFLDGRDTPPRSAKGSLQAFNELFAEL-GTG---RIASLIGR-YYAMDR-DNRWDRVSQAYELITQGKALHLYQDAVEALDAAYGR-DENDEFVASSAITDADGQ-VATLNDNDALIFMNFRADRARQITRSFVDPGFDGFERAVTPKINFVMLTEYAADIKAPV 306          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_ACIBL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Acidobacteria bacterium (strain Ellin345) GN=gpmI PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.821e-27
Identity = 81/221 (36.65%), Postives = 118/221 (53.39%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAP-HKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKAL------------EYEDFDXFD----RVRFPK-IRYAGMLQYDGELKLPVI 609
            LH  GLLSDGGVHS  + L  LL+ A E G +R+ +H   DGRD L  + V +V+ +++   ++R  G+  +IAS  GR Y  MDR +  WD  K   DA + G     ++K  V+ +K+   +    D+++ PFV VD+N + +G I DGDA + FNFRADR   + + L            E +  D  D    R   PK + Y  M QYD +  LP++
Sbjct:  111 LHFFGLLSDGGVHSHQNHLYALLRMAKENGVERVFVHPFMDGRDTLPTNGVKYVDQLQQ---KMREYGI-GKIASISGR-YYAMDR-DKKWDREKLASDAMLHGRGEGGRYKDPVQGIKESYNK-GVTDEFIIPFVCVDDNDQPIGVIRDGDACINFNFRADRARQITRVLARNSGITKDGGRELDAADTLDATIPRDTIPKDLHYTCMTQYDPKFTLPIV 324          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SHEB9 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella baltica (strain OS195) GN=gpmI PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.152e-26
Identity = 72/202 (35.64%), Postives = 116/202 (57.43%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  + ++ + + A  RGA ++ LH   DGRD    S+   +   + DL    G G   +IAS  GR Y  MDR +N WD V + +D    G++  ++ +AV A++   E+ N ND+++    I D +G+ V  + DGDA++  NFRADR   + ++    DFD F+R   PK+ +  + +Y G++K P+
Sbjct:  113 VHIMGLLSPGGVHSHEEHIEAMCRMAVARGATKVYLHAFLDGRDTPPRSAKSSLSHFD-DLFTTLGHG---RIASIIGR-YFAMDR-DNRWDRVSQAYDLITQGKSKFQYDNAVTALEAAYER-NENDEFVSSSAITDADGQ-VATLQDGDALIFMNFRADRARQITRSFINPDFDGFERAVVPKMHFVTLTEYAGDIKAPI 306          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SHEB5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=gpmI PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.505e-26
Identity = 72/202 (35.64%), Postives = 116/202 (57.43%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  + ++ + + A  RGA ++ LH   DGRD    S+   +   + DL    G G   +IAS  GR Y  MDR +N WD V + +D    G++  ++ +AV A++   E+ N ND+++    I D +G+ V  + DGDA++  NFRADR   + ++    DFD F+R   PK+ +  + +Y G++K P+
Sbjct:  113 VHIMGLLSAGGVHSHEEHIEAMCRMAVARGATKVYLHAFLDGRDTPPRSAKSSLSHFD-DLFTTLGHG---RIASIIGR-YFAMDR-DNRWDRVSQAYDLITQGKSKFQYDNAVTALEAAYER-NENDEFVSSSAITDADGQ-VATLQDGDALIFMNFRADRARQITRSFINPDFDGFERAVVPKMHFVTLTEYAGDIKAPI 306          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_ENT38 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Enterobacter sp. (strain 638) GN=gpmI PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.965e-26
Identity = 74/201 (36.82%), Postives = 118/201 (58.71%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLP 603
            +H++GLLS GGVHS  D +  +++ A+ERGA++I LH   DGRD    S+   ++T E   AEL GKG   ++AS  GR Y  MDR +N WD V++ +D   + +   +F +AV  ++    + + ND+++   VI  E G+A   + DGDA++  NFRADR   + +A    DFD F R +   + +  + +Y  ++K+P
Sbjct:  113 VHIMGLLSAGGVHSHEDHILAMVEMAAERGAEKIYLHAFLDGRDTPPRSAKSSLQTFEDKFAEL-GKG---RVASIIGR-YYAMDR-DNRWDRVEQAYDLMTMAKGEFQFDTAVAGLEAAYAR-DENDEFVKATVIRAE-GQADAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNLNFIMLTEYAADIKVP 305          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SHEB8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella baltica (strain OS185) GN=gpmI PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.567e-26
Identity = 72/202 (35.64%), Postives = 116/202 (57.43%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  + ++ + + A  RGA ++ LH   DGRD    S+   +   + DL    G G   +IAS  GR Y  MDR +N WD V + +D    G++  ++ +AV A++   E+ N ND+++    I D +G+ V  + DGDA++  NFRADR   + ++    DFD F+R   PK+ +  + +Y G++K P+
Sbjct:  113 VHIMGLLSAGGVHSHEEHIEAMCRMAVARGATKVYLHAFLDGRDTPPRSAKTSLSHFD-DLFTTLGHG---RIASIIGR-YFAMDR-DNRWDRVSQAYDLITQGKSKFQYDNAVTALEAAYER-NENDEFVSSSAITDADGQ-VATLQDGDALIFMNFRADRARQITRSFINPDFDGFERAVVPKMHFVTLTEYAGDIKAPI 306          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_BACCN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=gpmI PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.352e-26
Identity = 75/183 (40.98%), Postives = 109/183 (59.56%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNAN---DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR 540
            LHL GLLSDGGVHS +D +  LL+ A++ G +++ +H   DGRDV   ++ G+++      A ++  GV  Q A+  GR Y +MDR +  WD V++ + A V GE P  +K+A E V    E   AN   D+++ P VIV+E+   V  I D DAV+ +NFR DR + +A+    EDF  FDR
Sbjct:  110 LHLFGLLSDGGVHSHIDHMFALLRLAAKEGVEKVYIHAFLDGRDVGPQTAKGYIDATN---AVIKETGV-GQFATIAGR-YYSMDR-DKRWDRVEKCYRAMVYGEGP-TYKNAYECV----EDSYANGIYDEFVLPSVIVNEDETPVATINDDDAVIFYNFRPDRAIQIARVFTNEDFREFDR 281          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_CLOPH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=gpmI PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.378e-26
Identity = 83/197 (42.13%), Postives = 114/197 (57.87%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRV--RFPKIRYAGMLQYD 585
            LHL GLLSDGGVHS +  L  LL+ A   G + + +H   DGRD    S   F+E +E  +AEL   GV  +IAS  GR YV MDR +N WD V++ + A V GE   +  +AVEAV     +   ND+++ P V+V ++GKA+ PI   D+++ FNFR DR   + +A   +DFD F R   R P + Y    +YD
Sbjct:  111 LHLFGLLSDGGVHSHITHLYGLLELAKRHGLENVYVHAFLDGRDTAPTSGKSFMEALEAKMAEL---GV-GRIASVTGRYYV-MDR-DNRWDRVEKAYAALVDGEGV-EAANAVEAVAASYAE-GVNDEFVLPTVVV-KDGKAIAPIKANDSIIFFNFRPDRAREITRAFCTDDFDGFVRKSGRLP-LTYVCFSEYD 297          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_BACLD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=gpmI PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.378e-26
Identity = 70/180 (38.89%), Postives = 106/180 (58.89%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR 540
            LHL GLLSDGGVHS +  L  LLK A + G + + +H   DGRDV   ++  +++ ++  + E+   GV  +IA+  GR Y +MDR +  WD V++ + A   GE P K+++ ++ VK   E     D+++ P VI  ENG+ V  I D DAV+ +NFR DR + ++     +DF  FDR
Sbjct:  111 LHLFGLLSDGGVHSHIHHLYALLKLAKKEGVENVYIHGFLDGRDVGPQTAEKYIKELQDQIEEI---GV-GEIATLSGR-YYSMDR-DKRWDRVEKAYRAMAYGEGP-KYQNPLDVVKDSYEN-GIYDEFVIPSVITKENGEPVATIKDNDAVIFYNFRPDRAIQISNTFTNDDFRDFDR 282          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_CLOAB (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium acetobutylicum GN=gpmI PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.718e-26
Identity = 80/199 (40.20%), Postives = 116/199 (58.29%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELK 597
            LHL+GLLS GGVHS  + L+ LL+ A ++  K++ +H   DGRDV   S+  F++ IE  + E+ G G   +IA+  GR Y  MDR +N W+  +  ++A VLG+   + +SA++AV       N  D+++ P VIV E GK V  I D D+V+ FNFR DR   + +A+  E FD F R R   I +  M +YD   K
Sbjct:  111 LHLMGLLSPGGVHSHTNHLKGLLQLAKKKNVKKVFVHAFLDGRDVPPSSAKEFIKDIEDYMNEI-GLG---EIATVSGR-YYAMDR-DNRWEREELAYNAMVLGKG-EEAESAIKAV-DASYHDNKTDEFVLPTVIVKE-GKPVATIKDKDSVIFFNFRPDRARQITRAIAEEAFDGFKRDRL-NIEFVTMTEYDASFK 299          
The following BLAST results are available for this feature:
BLAST of CF417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_SHELP8.821e-2737.622,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ACIBL8.821e-2736.652,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEB91.152e-2635.642,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEB51.505e-2635.642,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ENT381.965e-2636.822,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEB82.567e-2635.642,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACCN3.352e-2640.982,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOPH4.378e-2642.132,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACLD4.378e-2638.892,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOAB5.718e-2640.202,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-272 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417342 ID=CF417342; Name=CF417342; organism=Citrus sinensis; type=EST; length=625bp
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGC
GTAGGATTCGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAA
AGGTGTTGACGCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGA
TGGACCGTTATGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCC
CAAGTTCTTGGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGT
CAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCAT
TTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGT
GATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGC
TAAGGCCCTTGAATATGAAGATTTTGACNAATTTGATCGAGTTCGGTTCC
CTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTT
CCCGTCATTACCTTGTGTCTCCTCC
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