CF417342

Overview
NameCF417342
Unique NameCF417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_BACSU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus subtilis GN=gpmI PE=1 SV=4)

HSP 1 Score: 117.472 bits (293), Expect = 5.718e-26
Identity = 77/201 (38.31%), Postives = 114/201 (56.72%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNAN---DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR-VRFPKIRYAGMLQYDGE 591
            LHL GLLSDGGVHS ++ L  LLK A + G  ++ +H   DGRDV   ++  ++  +   + E+   GV  +IAS  GR Y +MDR +  WD V++ + A   GE P  ++SA++ V    +   AN   D+++ P VI  ENG+ V  I DGD+V+ +NFR DR + ++     +DF  FDR   +PK  Y   L +  E
Sbjct:  111 LHLFGLLSDGGVHSHINHLFALLKLAKKEGLTKVYIHGFLDGRDVGPQTAKTYINQLNDQIKEI---GV-GEIASISGR-YYSMDR-DKRWDRVEKAYRAMAYGEGP-SYRSALDVV----DDSYANGIYDEFVIPSVITKENGEPVAKIQDGDSVIFYNFRPDRAIQISNTFTNKDFRDFDRGENYPKNLYFVCLTHFSE 300          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_GEOKA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Geobacillus kaustophilus GN=gpmI PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.467e-26
Identity = 69/180 (38.33%), Postives = 108/180 (60.00%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR 540
            LHL GLLSDGGVHS +  L  LL+ A++ G KR+ +H   DGRDV   ++  +++ +++ + E    GV  +IA+  GR Y +MDR +  WD V++ + A V GE P  ++  +E ++   +     D+++ P VIV E+G+ V  I D DA++ +NFR DR + ++     EDF  FDR
Sbjct:  111 LHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKEY---GV-GEIATLSGR-YYSMDR-DKRWDRVEKAYRAMVYGEGP-TYRDPLECIEDSYKH-GIYDEFVLPSVIVREDGRPVATIQDNDAIIFYNFRPDRAIQISNTFTNEDFREFDR 282          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_BACST (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus stearothermophilus GN=gpmI PE=1 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 7.467e-26
Identity = 69/180 (38.33%), Postives = 108/180 (60.00%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR 540
            LHL GLLSDGGVHS +  L  LL+ A++ G KR+ +H   DGRDV   ++  +++ +++ + E    GV  +IA+  GR Y +MDR +  WD V++ + A V GE P  ++  +E ++   +     D+++ P VIV E+G+ V  I D DA++ +NFR DR + ++     EDF  FDR
Sbjct:  111 LHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKEY---GV-GEIATLSGR-YYSMDR-DKRWDRVEKAYRAMVYGEGP-TYRDPLECIEDSYKH-GIYDEFVLPSVIVREDGRPVATIQDNDAIIFYNFRPDRAIQISNTFTNEDFREFDR 282          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_BACA2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus amyloliquefaciens (strain FZB42) GN=gpmI PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.753e-26
Identity = 70/180 (38.89%), Postives = 106/180 (58.89%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR 540
            LHL GLLSDGGVHS ++ L  LLK A   G  ++ +H   DGRDV   ++  +++ + + + E+   GV  +IAS  GR Y +MDR +  WD V++ + A   GE P  ++SA++ V         +D+++ P VI  ENG+ V  I DGD+V+ +NFR DR + ++     +DF  FDR
Sbjct:  111 LHLFGLLSDGGVHSHINHLFALLKLAKSEGLTKVYIHGFLDGRDVGPQTAKTYIQQLNEQVEEI---GV-GEIASISGR-YYSMDR-DKRWDRVEKAYRAMAYGEGP-SYRSAMDVVDDSYAN-GIHDEFVIPSVITKENGEPVAKIHDGDSVIFYNFRPDRAIQISNTFTNKDFRDFDR 282          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SHESW (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sp. (strain W3-18-1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.838e-25
Identity = 69/202 (34.16%), Postives = 115/202 (56.93%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  + ++ + + A  RGA ++ LH   DGRD    S+   +   + DL    G G   ++AS  GR Y  MDR +N WD V + ++    G+A  ++ +AV A++    + + ND+++    I D +GK V  + DGDA++  NFRADR   + ++  + DFD F+R   PK+ +  + +Y G++  P+
Sbjct:  113 VHIMGLLSPGGVHSHEEHIEAMCRMAVARGATKVYLHAFLDGRDTPPRSAKASLSHFD-DLFTTLGHG---RVASIIGR-YFAMDR-DNRWDRVSQAYELITQGKAKFQYDNAVTALEAAYAR-DENDEFVSSSAITDVDGK-VATLQDGDALIFMNFRADRARQITRSFIHPDFDGFERAVVPKMHFVTLTEYAGDITAPI 306          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SHEPC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=gpmI PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.838e-25
Identity = 69/202 (34.16%), Postives = 115/202 (56.93%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  + ++ + + A  RGA ++ LH   DGRD    S+   +   + DL    G G   ++AS  GR Y  MDR +N WD V + ++    G+A  ++ +AV A++    + + ND+++    I D +GK V  + DGDA++  NFRADR   + ++  + DFD F+R   PK+ +  + +Y G++  P+
Sbjct:  113 VHIMGLLSPGGVHSHEEHIEAMCRMAVARGATKVYLHAFLDGRDTPPRSAKASLSHFD-DLFTTLGHG---RVASIIGR-YFAMDR-DNRWDRVSQAYELITQGKAKFQYDNAVTALEAAYAR-DENDEFVSSSAITDVDGK-VATLQDGDALIFMNFRADRARQITRSFIHPDFDGFERAVVPKMHFVTLTEYAGDITAPI 306          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_CLOBL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=gpmI PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.838e-25
Identity = 79/199 (39.70%), Postives = 118/199 (59.30%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELK 597
            LHL+GLLS GGVHS +D L+ L+K A E+  K++ +H   DGRDV   S+  ++E IE  + E+   GV  +IA+  GR Y  MDR +  W+ V+  ++A VLG+   +  SAVE ++K   + N  D+++ P V++ E GK    I + D+VV FNFR DR   L +A+  + FD F+R     + Y  M +YD  L+
Sbjct:  111 LHLLGLLSPGGVHSHIDHLKGLIKLAKEKDIKKVYIHAFLDGRDVAPSSAKEYIEDIEIYMQEI---GV-GEIATISGR-YYAMDR-DKRWERVQLCYNAIVLGKG-EEANSAVEGLEK-SYRDNKTDEFVLPSVVLKE-GKPKAKIENKDSVVFFNFRPDRARELTRAINDKVFDGFERETL-DLTYVTMTEYDSTLE 299          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_CLOB8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=gpmI PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.838e-25
Identity = 77/199 (38.69%), Postives = 115/199 (57.79%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELK 597
            LHL+GLLSDGGVHS ++ L+ LL+ A +   + + +H   DGRDV   S   F+E  EK +AE+   GV  +IA+  GR Y  MDR +N W+ V+  ++A VLG+      SA +A++K     N  D+++ P  +V ENG     I +GD+V+ FNFR DR   + +A+  ++F  F R     + +  M QYD  L+
Sbjct:  111 LHLMGLLSDGGVHSHIEHLRGLLEFAKKEEVQNVYVHAFMDGRDVPPSSGQEFIEKTEKMMAEV---GV-GKIATVSGR-YYAMDR-DNRWERVELAYNALVLGKG-ETASSATQAIEK-SYHDNKTDEFVLP-TVVTENGNPTANIKNGDSVIFFNFRPDRAREITRAINDKEFAGFKRETL-DLTFVTMTQYDKTLE 299          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_BACME (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus megaterium GN=gpmI PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.838e-25
Identity = 71/180 (39.44%), Postives = 104/180 (57.78%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR 540
            LHL GLLSDGGVHS ++ L  LL+ A   G +++ +H   DGRDV   S+  +++ + + + E    GV  +IA+  GR Y +MDR +  W+ V++ + A V GE P  + SA E VK   +     D+++ P VI  E+G  V  I D DAV+ +NFR DR + ++     EDF  FDR
Sbjct:  111 LHLFGLLSDGGVHSHIEHLYALLRLAKSEGLEKVYIHGFLDGRDVAPQSAETYLKELNEKIEEY---GV-GEIATLSGR-YYSMDR-DKRWERVEKSYRAMVYGEGP-SYTSAEECVKDSYDN-GIYDEFVLPSVITKEDGSPVATIQDEDAVIFYNFRPDRAIQISNTFANEDFRSFDR 282          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_GEOTN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.706e-25
Identity = 68/180 (37.78%), Postives = 107/180 (59.44%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR 540
            LHL GLLSDGGVHS +  L  LL+ A++ G KR+ +H   DGRDV   ++  +++ +++ + E    GV  +IA+  GR Y +MDR +  W+ V++ + A V GE P  ++  +E ++   +     D+++ P VIV E+G  V  I D DA++ +NFR DR + ++     EDF  FDR
Sbjct:  111 LHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKEY---GV-GEIATLSGR-YYSMDR-DKRWERVEKAYRAMVYGEGP-TYRDPLECIEDSYKN-GIYDEFVLPSVIVREDGSPVATIQDNDAIIFYNFRPDRAIQISNTFTNEDFREFDR 282          
The following BLAST results are available for this feature:
BLAST of CF417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_BACSU5.718e-2638.312,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GEOKA7.467e-2638.332,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACST7.467e-2638.332,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACA29.753e-2638.892,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHESW2.838e-2534.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEPC2.838e-2534.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOBL2.838e-2539.702,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOB82.838e-2538.692,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACME2.838e-2539.442,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GEOTN3.706e-2537.782,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-272 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417342 ID=CF417342; Name=CF417342; organism=Citrus sinensis; type=EST; length=625bp
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGC
GTAGGATTCGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAA
AGGTGTTGACGCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGA
TGGACCGTTATGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCC
CAAGTTCTTGGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGT
CAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCAT
TTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGT
GATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGC
TAAGGCCCTTGAATATGAAGATTTTGACNAATTTGATCGAGTTCGGTTCC
CTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTT
CCCGTCATTACCTTGTGTCTCCTCC
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