CF417342

Overview
NameCF417342
Unique NameCF417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12501 contig Csv1_Contig12501:464..1089. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_CLONN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium novyi (strain NT) GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.706e-25
Identity = 71/199 (35.68%), Postives = 117/199 (58.79%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELK 597
            +H +GLLSDGGVHS +D L+ L+  A++ G K++ +H   DGRD    S++ ++E +EK +AE+   GV   IA+  GR Y  MDR +  W+ ++  ++A VLG+      S  EAV++     N  D+++ P  +++++GK V  I   D+VV FNFR DR   + +A+  ++FD F R     + +  M +YD  ++
Sbjct:  111 IHFMGLLSDGGVHSHIDHLKGLIDFAAKSGVKKVYVHAFLDGRDTAPKSALTYIEDLEKHMAEV---GV-GSIATVSGR-YYAMDR-DKRWERIELAYNAMVLGKG-EVATSPKEAVER-SYHDNKTDEFVLP-TVIEKDGKPVATIKSNDSVVFFNFRPDRARQITRAINDKEFDGFKRETL-NLVFVTMTEYDSTIE 299          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_BACHK (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus thuringiensis subsp. konkukian GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.706e-25
Identity = 74/183 (40.44%), Postives = 108/183 (59.02%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNAN---DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR 540
            LHL GLLSDGGVHS ++ +  LL+ A++ G +++ +H   DGRDV   ++  +++   + + E    GV  Q A+  GR Y +MDR +  WD V++ + A V GE P  +KSA E V    E   AN   D+++ P VIV+E+   V  I D DAV+ +NFR DR + +A+    EDF  FDR
Sbjct:  110 LHLFGLLSDGGVHSHMNHMFALLRLAAKEGVEKVYIHAFLDGRDVGPKTAQSYIDATNEVIKE---TGV-GQFATISGR-YYSMDR-DKRWDRVEKCYRAMVNGEGP-TYKSAEECV----EDSYANGIYDEFVLPSVIVNEDNTPVATINDDDAVIFYNFRPDRAIQIARVFTNEDFREFDR 281          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_BACCZ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus cereus (strain ZK / E33L) GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.706e-25
Identity = 74/183 (40.44%), Postives = 108/183 (59.02%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNAN---DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR 540
            LHL GLLSDGGVHS ++ +  LL+ A++ G +++ +H   DGRDV   ++  +++   + + E    GV  Q A+  GR Y +MDR +  WD V++ + A V GE P  +KSA E V    E   AN   D+++ P VIV+E+   V  I D DAV+ +NFR DR + +A+    EDF  FDR
Sbjct:  110 LHLFGLLSDGGVHSHMNHMFALLRLAAKEGVEKVYIHAFLDGRDVGPKTAQSYIDATNEVIKE---TGV-GQFATISGR-YYSMDR-DKRWDRVEKCYRAMVNGEGP-TYKSAEECV----EDSYANGIYDEFVLPSVIVNEDNTPVATINDDDAVIFYNFRPDRAIQIARVFTNEDFREFDR 281          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_BACCR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.706e-25
Identity = 74/183 (40.44%), Postives = 108/183 (59.02%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNAN---DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR 540
            LHL GLLSDGGVHS ++ +  LL+ A++ G +++ +H   DGRDV   ++  +++   + + E    GV  Q A+  GR Y +MDR +  WD V++ + A V GE P  +KSA E V    E   AN   D+++ P VIV+E+   V  I D DAV+ +NFR DR + +A+    EDF  FDR
Sbjct:  110 LHLFGLLSDGGVHSHMNHMFALLRLAAKEGVEKVYIHAFLDGRDVGPKTAQSYIDATNEVIKE---TGV-GQFATISGR-YYSMDR-DKRWDRVEKCYRAMVNGEGP-TYKSAEECV----EDSYANGIYDEFVLPSVIVNEDNTPVATINDDDAVIFYNFRPDRAIQIARVFTNEDFREFDR 281          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_BACC1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus cereus (strain ATCC 10987) GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.706e-25
Identity = 74/183 (40.44%), Postives = 108/183 (59.02%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNAN---DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR 540
            LHL GLLSDGGVHS ++ +  LL+ A++ G +++ +H   DGRDV   ++  +++   + + E    GV  Q A+  GR Y +MDR +  WD V++ + A V GE P  +KSA E V    E   AN   D+++ P VIV+E+   V  I D DAV+ +NFR DR + +A+    EDF  FDR
Sbjct:  110 LHLFGLLSDGGVHSHMNHMFALLRLAAKEGVEKVYIHAFLDGRDVGPKTAQSYIDATNEVIKE---TGV-GQFATISGR-YYSMDR-DKRWDRVEKCYRAMVNGEGP-TYKSAEECV----EDSYANGIYDEFVLPSVIVNEDNTPVATINDDDAVIFYNFRPDRAIQIARVFTNEDFREFDR 281          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_BACAH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus thuringiensis (strain Al Hakam) GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.706e-25
Identity = 74/183 (40.44%), Postives = 108/183 (59.02%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNAN---DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR 540
            LHL GLLSDGGVHS ++ +  LL+ A++ G +++ +H   DGRDV   ++  +++   + + E    GV  Q A+  GR Y +MDR +  WD V++ + A V GE P  +KSA E V    E   AN   D+++ P VIV+E+   V  I D DAV+ +NFR DR + +A+    EDF  FDR
Sbjct:  110 LHLFGLLSDGGVHSHMNHMFALLRLAAKEGVEKVYIHAFLDGRDVGPKTAQSYIDATNEVMKE---TGV-GQFATISGR-YYSMDR-DKRWDRVEKCYRAMVNGEGP-TYKSAEECV----EDSYANGIYDEFVLPSVIVNEDNTPVATINDDDAVIFYNFRPDRAIQIARVFTNEDFREFDR 281          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SHEPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.840e-25
Identity = 71/202 (35.15%), Postives = 115/202 (56.93%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  D ++ + + A +RGAK++ LH   DGRD    S+   +   E +L +  G G   Q+AS  GR Y  MDR +N WD V + ++    G++ H+  +AV+A++    + + ND+++   VI D  G  +  +VD DA++  NFRADR   + ++    DFD F+R   PKI +  + +Y   +K  +
Sbjct:  113 VHIMGLLSPGGVHSHQDHIEAMCRLAVKRGAKKVYLHAFLDGRDTPPRSAKPGLAHFE-ELFKSLGTG---QVASVIGR-YYAMDR-DNRWDRVSQAYELITEGKSLHQSATAVDAIEAAYTR-DENDEFVGSTVIPDAQGN-IAKLVDNDALIFMNFRADRARQITRSFVDADFDGFERAVTPKINFVMLTEYAANIKAAI 306          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_PSEE4 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas entomophila (strain L48) GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.840e-25
Identity = 80/202 (39.60%), Postives = 114/202 (56.44%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKI-RYAGMLQYDGELKLP 603
            +H++GLLSDGGVHS  D L  + + A++RGA++I LH   DGRD    S+   +E ++   A+L GKG   +IAS  GR Y  MDR +N WD V   ++  V   A +   SA+  ++    +   ND+    FV     G+AV  + DGDAV+  NFRADR   L++A    DF+ F R R PK+  Y G+ QY  ++  P
Sbjct:  113 VHILGLLSDGGVHSHQDHLIAMAELAAQRGAEKIYLHAFLDGRDTPPRSAQSSIELLDATFAKL-GKG---RIASLIGR-YYAMDR-DNRWDRVSAAYNLIVDSAAEYTADSALAGLQAAYAR-EENDE----FVKATRIGEAV-KVEDGDAVIFMNFRADRARELSRAFVEPDFNEFPRARLPKLAAYIGLTQYSAKIPAP 302          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_GEOSL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Geobacter sulfurreducens GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.840e-25
Identity = 75/203 (36.95%), Postives = 110/203 (54.19%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKI-RYAGMLQYDGELKLPV 606
            LHL GLLSDGGVHS    L  L++ A  +G K + +H   DGRD    S  G++  +E ++  + G G   ++A+  GR Y  MDR +N W+ V+R ++  V GE  H+  SA  A  +        D+++ P VI   NG  +G + DGD  + FNFR+DR   + +AL    F  FDR  +P++  Y  + +YD    LPV
Sbjct:  110 LHLGGLLSDGGVHSHNTHLYALIELARRQGVKDVFVHAFLDGRDTPPSSGAGYLAELEAEIGRI-GFG---RVATVMGR-YWAMDR-DNRWERVERAYNTIVKGEGAHRPDSA--AAIEASYSAGVTDEFVEPAVIA-PNGSPLGLLADGDGFICFNFRSDRAREITRALTDPAFAGFDRSPWPRLASYVCLTEYDATFPLPV 303          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_CLOB1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.840e-25
Identity = 78/199 (39.20%), Postives = 118/199 (59.30%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELK 597
            LHL+GLLS GGVHS +D L+ L+K A E+  K++ +H   DGRDV   S+  ++E IE  + E+   GV  +IA+  GR Y  MDR +  W+ V+  ++A VLG+   +  SAVE ++K   + N  D+++ P V++ E GK    I + D+VV FNFR DR   L +A+  + FD F+R     + Y  + +YD  L+
Sbjct:  111 LHLLGLLSPGGVHSHIDHLKGLIKLAKEKDIKKVYIHAFLDGRDVAPSSAKEYIEDIENYMNEI---GV-GEIATISGR-YYAMDR-DKRWERVQLCYNAIVLGKG-EEANSAVEGLEK-SYRDNKTDEFVLPSVVLKE-GKPKAKIENKDSVVFFNFRPDRARELTRAINDKVFDGFERETL-DLTYVTVTEYDSTLE 299          
The following BLAST results are available for this feature:
BLAST of CF417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_CLONN3.706e-2535.682,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACHK3.706e-2540.442,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACCZ3.706e-2540.442,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACCR3.706e-2540.442,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACC13.706e-2540.442,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACAH3.706e-2540.442,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEPA4.840e-2535.152,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEE44.840e-2539.602,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_GEOSL4.840e-2536.952,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOB14.840e-2539.202,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-272 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417342 ID=CF417342; Name=CF417342; organism=Citrus sinensis; type=EST; length=625bp
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGC
GTAGGATTCGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAA
AGGTGTTGACGCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGA
TGGACCGTTATGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCC
CAAGTTCTTGGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGT
CAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCAT
TTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGT
GATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGC
TAAGGCCCTTGAATATGAAGATTTTGACNAATTTGATCGAGTTCGGTTCC
CTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTT
CCCGTCATTACCTTGTGTCTCCTCC
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