CF417342

Overview
NameCF417342
Unique NameCF417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12501 contig Csv1_Contig12501:464..1089. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_BACHD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus halodurans GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.840e-25
Identity = 68/180 (37.78%), Postives = 107/180 (59.44%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR 540
            LH+ GL+SDGG+HS ++ L  LL+ A     +R+ +H   DGRDV   S+  ++  +E  + EL   GV  ++A+  GR Y  MDR +  WD V++ + A V GE P  + SA++ +K   E  + +D+++ P VI +E+G  V  I D DA++ FNFR DR + +++    +DF  FDR
Sbjct:  111 LHIYGLVSDGGIHSHINHLYALLELAKREQVERVYIHGFLDGRDVGPTSAESYLVDLEAKMKEL---GV-GELATLHGR-YYAMDR-DKRWDRVEKSYRAMVYGEGP-AYSSALDVIKDSYEN-SIHDEFVIPSVITNEDGSPVATIEDDDAIIFFNFRPDRAIQMSQVFTNKDFRGFDR 282          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_CELJU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Cellvibrio japonicus (strain Ueda107) GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.322e-25
Identity = 78/204 (38.24%), Postives = 115/204 (56.37%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR-VRFPKI-RYAGMLQYDGELKLPV 606
            +H++GLLS+GGVHS  D L  ++  A ERGAK++ LH   DGRD    S+   ++  +   A+L G G   ++AS  GR Y  +DR +N WD VK  +D  V GEA     +AV+ +K   E+   ND+++   VI  E+ + V  I DGD+V+  NFR DR   + +AL  E+F  FDR    P I  +    +Y  ++K P+
Sbjct:  112 VHILGLLSEGGVHSHQDHLYAMINMAVERGAKQVYLHAFLDGRDTPPRSAEASLQKAQDVFAKL-GTG---RVASIVGR-YFALDR-DNRWDRVKTAYDVMVTGEAEFDALTAVDGLKAAYER-GENDEFVKATVICGED-EEVATINDGDSVIFMNFRPDRAREITRALIDENFTGFDRGETHPAIAHFVQTTEYASDIKAPI 307          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_BACP2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus pumilus (strain SAFR-032) GN=gpmI PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.322e-25
Identity = 68/180 (37.78%), Postives = 105/180 (58.33%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR 540
            LHL GLLSDGGVHS +  L  LLK A + G  ++ +H   DGRDV   ++  +++ +E+ + E+   GV  ++A+  GR Y +MDR +  WD V++ + A   GE P  +++  + V    E     D+++ P VI  ENG+ V  + DGD+V+ +NFR DR + ++     EDF  FDR
Sbjct:  111 LHLFGLLSDGGVHSHIQHLFALLKLAKKEGLTKVYIHGFLDGRDVGQKTAKVYLKQLEEQIKEI---GV-GEVATLSGR-YYSMDR-DKRWDRVEKAYRAMAYGEGP-SYQNIYDVVDDSYEN-GIYDEFVIPSVITRENGEPVAKVNDGDSVIFYNFRPDRAIQISNTFTNEDFRSFDR 282          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_COLP3 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=gpmI PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.256e-25
Identity = 72/207 (34.78%), Postives = 117/207 (56.52%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAEL-----RGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKI-RYAGMLQYDGELKLP 603
            +H+ GLLS GGVHS  + +  +++ A +RGA+++ LH   DGRD    S+   +E  ++  ++L      G+G   QIAS  GR Y  MDR +  WD V+  ++  V GE  H++ SA++A+    E+ N ND+++    I   +GKA+  + DGDA++  NFRADR    ++     +F+ F+R R P I  +  + QY  ++  P
Sbjct:  112 VHIFGLLSPGGVHSHEEHIFAMMELAKKRGAQKVYLHAFLDGRDTPPRSAQASLEKAQQKFSKLFTETDTGEG---QIASVIGR-YYAMDR-DQRWDRVEAAYNLMVNGEGLHQYNSALDALAAAYER-NENDEFVGASAITSPSGKAI-KVNDGDALIFMNFRADRARQFSRCFTDTNFNGFERKRIPAISNFVMLTQYAADIDAP 311          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SHEAM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=gpmI PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.078e-24
Identity = 68/199 (34.17%), Postives = 113/199 (56.78%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELK 597
            +H++GLLS GGVHS  + ++ +++ A++RGA ++ LH   DGRD    S+ G +    +  A L       +IAS  GR Y  MDR +N WD V + +D    G+  H   +AV+A++    + + ND+++ P  IVD NG +V  + D DA++  NFRADR   ++++     F  F+R   PK  +  + +Y G+++
Sbjct:  112 VHIMGLLSPGGVHSHEEHIEAMIRMAAKRGATKVYLHAFLDGRDTPPRSAKGSLAHFTELFASLNA----GRIASIVGR-YFAMDR-DNRWDRVVQAYDLITQGKGKHSATNAVDALEAAYAR-DENDEFVAPTAIVDANGDSVS-LNDNDALIFMNFRADRARQISRSFTDPAFAGFERAVTPKTHFVMLTEYAGDIQ 302          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_PSEP1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=gpmI PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.078e-24
Identity = 78/202 (38.61%), Postives = 112/202 (55.45%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKI-RYAGMLQYDGELKLP 603
            +H++GLLSDGGVHS  D L  + K A++RGA++I LH   DGRD    S+   +E ++   A+L GKG   +IAS  GR Y  MDR +N WD V   ++  V   A +   +A+  ++    +  +++     FV     G AV  + DGDAV+  NFRADR   L++A    DF  F R R PK+  Y G+ QY  ++  P
Sbjct:  113 VHILGLLSDGGVHSHQDHLVAMAKLAAQRGAEKIYLHAFLDGRDTPPRSAQSSIELLDATFAKL-GKG---RIASLIGR-YYAMDR-DNRWDRVSAAYNLIVDSAAEYTADTALAGLEAAYARDESDE-----FVKATRIGDAV-KVEDGDAVIFMNFRADRARELSRAFVEPDFTEFARARLPKMAAYIGLTQYSAKIPAP 302          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_HAHCH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Hahella chejuensis (strain KCTC 2396) GN=gpmI PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.078e-24
Identity = 76/186 (40.86%), Postives = 104/186 (55.91%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKI 558
            +HL+GLLS GGVHS  D +    K A ERGA ++ +H   DGRD    S+   +E  +K L EL G G   ++AS  GR Y  MDR +N WD V+  +D   LGEAP+  +SAV+A+    E+   ++      +    +  AV  I DGDAV+  NFRADR   L +    +DFD F R + PK+
Sbjct:  113 VHLLGLLSPGGVHSHEDHILAACKVARERGADKVFVHAFLDGRDTPPRSAQPSLERTDKLLKEL-GCG---RVASIIGR-YYAMDR-DNRWDRVQAAYDLLTLGEAPYHAESAVQALTAAYERGEDDEFVKATLIKGSSDNDAV--ISDGDAVIFMNFRADRARELTRCFVEQDFDGFQRNKLPKL 290          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SHEON (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella oneidensis GN=gpmI PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.408e-24
Identity = 69/202 (34.16%), Postives = 113/202 (55.94%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  + ++ + + A  RGA ++ LH   DGRD    S+   +   + DL    G G   +IAS  GR Y  MDR +N WD V + +D    G++  ++ +AV A++    + + ND+++    I D NG+ V  + DGDA++  NFRADR   + ++    +FD F R   PK+ +  + +Y  ++K P+
Sbjct:  113 VHIMGLLSPGGVHSHEEHIEAMCRMAVARGATKVYLHAFLDGRDTPPRSAKSSLSHFD-DLFTTLGHG---RIASIIGR-YFAMDR-DNRWDRVSQAYDLITQGKSKFQYDNAVTALEAAYSR-DENDEFVSSSAITDANGQ-VATLQDGDALIFMNFRADRARQITRSFINPEFDGFARAVTPKVNFVTLTEYAADIKAPI 306          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_PSEPK (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas putida (strain KT2440) GN=gpmI PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.839e-24
Identity = 77/202 (38.12%), Postives = 113/202 (55.94%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKI-RYAGMLQYDGELKLP 603
            +H++GLLSDGGVHS  D L  + + A++RGA++I LH   DGRD    S+   +E ++   A+L GKG   +IAS  GR Y  MDR +N WD V   ++  V   A +   +A+  ++    +  +++     FV     G+AV  + DGDAV+  NFRADR   L++A    DF  F R R PK+  Y G+ QY  ++  P
Sbjct:  113 VHILGLLSDGGVHSHQDHLVAMAELAAQRGAEKIYLHAFLDGRDTPPRSAQSSIELLDATFAKL-GKG---RIASLIGR-YYAMDR-DNRWDRVSAAYNLIVDSAAEYTADTALAGLEAAYARDESDE-----FVKATRIGEAV-KVEDGDAVIFMNFRADRARELSRAFVEPDFTEFARARLPKMAAYIGLTQYSAKIPAP 302          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_CLOTH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=gpmI PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.839e-24
Identity = 78/197 (39.59%), Postives = 116/197 (58.88%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVR--FPKIRYAGMLQYD 585
            LHL GLLSDGGVHS    L  LL+ A  +  K + +H   DGRDV   S++G+VE +E  + E+   GV  +IA+  GR Y  MDR +N W+ VK  +DA VLG   ++ +SA EAV +  ++    D+++ P VI+ +NG  V  + + D+++ FNFR DR   + +A    +F  F+R +  FP + +  M QYD
Sbjct:  111 LHLFGLLSDGGVHSHNTHLYGLLEFAKRQNLKDVYVHCFFDGRDVPPDSAMGYVEELENKIREI---GV-GEIATVMGR-YYAMDR-DNRWERVKLAYDAMVLGRG-NQAQSAKEAVAESYKRQEF-DEFVKPTVIM-KNGSPVATVGENDSIIFFNFRPDRAREITRAFTEVNFSGFEREKGYFP-VFFVCMTQYD 297          
The following BLAST results are available for this feature:
BLAST of CF417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_BACHD4.840e-2537.782,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CELJU6.322e-2538.242,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACP26.322e-2537.782,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_COLP38.256e-2534.782,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEAM1.078e-2434.172,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEP11.078e-2438.612,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_HAHCH1.078e-2440.862,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEON1.408e-2434.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEPK1.839e-2438.122,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOTH1.839e-2439.592,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-272 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417342 ID=CF417342; Name=CF417342; organism=Citrus sinensis; type=EST; length=625bp
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGC
GTAGGATTCGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAA
AGGTGTTGACGCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGA
TGGACCGTTATGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCC
CAAGTTCTTGGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGT
CAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCAT
TTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGT
GATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGC
TAAGGCCCTTGAATATGAAGATTTTGACNAATTTGATCGAGTTCGGTTCC
CTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTT
CCCGTCATTACCTTGTGTCTCCTCC
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