CF417342

Overview
NameCF417342
Unique NameCF417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12501 contig Csv1_Contig12501:464..1089. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SHESH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella sediminis (strain HAW-EB3) GN=gpmI PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.402e-24
Identity = 69/202 (34.16%), Postives = 114/202 (56.44%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS    ++ + + A  RGAK++ LH   DGRD    S+ G +   + DL    G G   ++AS  GR Y  MDR +N WD V + ++    G++ H++ +AVEA++    + + ND+++    I+D  G +   + DGDA++  NFRADR   + ++    DFD F+R   PK  +  + +Y  ++K  +
Sbjct:  113 VHIMGLLSPGGVHSHESHIEAMCRLAVARGAKQVYLHAFLDGRDTPPRSAKGSLAHFD-DLFTTLGTG---RVASVIGR-YYAMDR-DNRWDRVSQAYELITEGKSLHQYSNAVEALEAAYAR-DENDEFVGSSAILDAQGDS-AQLADGDALIFMNFRADRARQITRSFVDADFDGFERNVTPKAHFVMLTEYAADIKAAI 306          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SACD2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=gpmI PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.402e-24
Identity = 72/186 (38.71%), Postives = 108/186 (58.06%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKI 558
            +H+IGLLSDGGVHS  D +  +++ A +RGA+++ +H   DGRD    S+   ++  E+ L  L G     +IAS  GR +  +DR +N WD V++ +D  V G+A    +SA   ++   E+ + ND+++    IVD +GK V  I DGDAV+  NFR DR   L  A   ++FD F R R P +
Sbjct:  113 VHVIGLLSDGGVHSHEDHMIAMMELAVKRGAEKVYMHAFLDGRDTPPRSAKAPLQKTEEKLKALGG----GKIASIIGRFF-ALDR-DNRWDRVQQAFDLMVDGKAAFTAQSATAGLEAAYER-DENDEFVKATAIVDADGKPV-TIEDGDAVIFMNFRPDRARQLTNAFVDKNFDGFARARVPAL 290          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_MAGSM (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Magnetococcus sp. (strain MC-1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.402e-24
Identity = 76/200 (38.00%), Postives = 113/200 (56.50%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKI-RYAGMLQYDGELK 597
            +HL GLLS GGVHS  DQ+   ++ A + GA  I +H L DGRD    S++ ++   E+ L +L G G   ++A+  GR Y TMDR +  W+ V+RG+    LGE    F SA EA++   +     D+++ P V+V E G+ +G I DGD ++  NFRADR+  ++       F+ F R   PK+  Y  + QYD  L+
Sbjct:  114 VHLYGLLSPGGVHSHQDQILAAVQCAKQNGASEIYIHALLDGRDTPPQSAMEYMTRFEEGLQKL-GAG---RVATVCGR-YFTMDR-DKRWERVERGYRLMALGEGT-PFDSACEAIQAAYD-AQQTDEFVEPAVMV-EQGQPIGMINDGDTLICMNFRADRVREISHVFTDTTFEPFVRDGLPKLSAYVCLTQYDVSLQ 304          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_CLOK5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=gpmI PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.402e-24
Identity = 73/199 (36.68%), Postives = 117/199 (58.79%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELK 597
            LHL+GL+S GGVHS  + L+ LL+ A ++GA R+ +H  TDGRDV   S+  +++ +EK + ++   G+  +IA+  GR Y  MDR +  W+ V+  ++A V G   +K  SA EAV    +     D+++ P  +++E+ K V  I +GD+V+ FNFR DR   L +AL    F  F R +   +++  M +YD  L+
Sbjct:  111 LHLLGLVSPGGVHSHTNHLKGLLQLAKQKGASRVYIHAFTDGRDVPPSSAYMYIDDMEKYIQKI---GI-GKIATVSGR-YYAMDR-DKRWERVELAYNALVYGRG-NKAASASEAVTNSYDN-GKTDEFIVP-TVIEEDNKPVTTIKNGDSVIFFNFRPDRARQLTRALNDNIFKGFKREKL-DLKFVTMTEYDATLE 299          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_BACAN (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus anthracis GN=gpmI PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.402e-24
Identity = 73/183 (39.89%), Postives = 107/183 (58.47%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNAN---DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR 540
            LHL GLLSDGGVHS ++ +  LL+ A++ G +++ +H   DGRDV   ++  +++   + + E    GV  Q A+  GR Y +MDR +  WD V++ + A V GE P  +KSA E V    E   AN   D+++ P VIV+E+   V  I D DAV+ +NFR DR + +A+     DF  FDR
Sbjct:  110 LHLFGLLSDGGVHSHMNHMFALLRLAAKEGVEKVYIHAFLDGRDVGPKTAQSYIDATNEVIKE---TGV-GQFATISGR-YYSMDR-DKRWDRVEKCYRAMVNGEGP-TYKSAEECV----EDSYANGIYDEFVLPSVIVNEDNTPVATINDDDAVIFYNFRPDRAIQIARVFTNGDFREFDR 281          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_PSEPG (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas putida (strain GB-1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.137e-24
Identity = 78/202 (38.61%), Postives = 112/202 (55.45%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKI-RYAGMLQYDGELKLP 603
            +H++GLLSDGGVHS  D L  + + A++RGA++I LH   DGRD    S+   +E ++   A+L GKG   +IAS  GR Y  MDR +N WD V   ++  V   A +   +A   ++    +  +++     FV     G+AV  + DGDAVV  NFRADR   L++A    DF  F R R PK+  Y G+ QY  ++  P
Sbjct:  113 VHILGLLSDGGVHSHQDHLVAMAELAAQRGAEKIYLHAFLDGRDTPPRSAQSSIELLDATFAKL-GKG---RIASLIGR-YYAMDR-DNRWDRVSAAYNLIVDSAAEYTADTAQAGLEAAYARDESDE-----FVKATRIGEAV-KVEDGDAVVFMNFRADRARELSRAFVEPDFTEFARARLPKMAAYIGLTQYSAKIPAP 302          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_OCEIH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Oceanobacillus iheyensis GN=gpmI PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.137e-24
Identity = 72/183 (39.34%), Postives = 107/183 (58.47%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNAN---DQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR 540
            LHL GLLSDGGVHS ++ L  LL+ A +   + + +H   DGRDV   ++  +++  +  + EL   GV  Q A+  GR Y +MDR +  WD VK+ +DA V GE P  +KSA E V    +   AN   D+++ P VI D+N + V  I D D+++ +NFR DR + +++    EDF  F+R
Sbjct:  112 LHLFGLLSDGGVHSHINHLFALLRLAKKHELENVFVHAFLDGRDVGPKTASKYIKETQDVMDEL---GV-GQFATISGR-YYSMDR-DKRWDRVKKCYDAMVYGEGP-SYKSAQEVV----DDNYANEIYDEFVIPSVITDDNDEPVATIKDEDSIIFYNFRPDRAIQISRTFANEDFRDFER 283          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_NATPD (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=gpmI PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.137e-24
Identity = 80/202 (39.60%), Postives = 105/202 (51.98%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H +GL+SDGGVHS    L  L+  A+ERG + +  H  TDGRD    S VGF+E    DLA    +     +A+  GR Y  MDR EN W+  KR +DA V  EAPH+  SAV AV    ++ +  D+Y+ P ++   +     P+   DAVV FNFRADR   L + L   D D       P      M +YD    LPV
Sbjct:  108 VHFMGLVSDGGVHSYQSHLHALVDLAAERGVEAVT-HAFTDGRDTAPKSGVGFIE----DLAATVEEAGTGDVATVCGRYYA-MDRDEN-WERTKRAYDAIVHREAPHEADSAVAAVAASYDRGDT-DEYVEPTLVSGTDA----PLSADDAVVFFNFRADRARQLVRMLADIDPDWAFETDPPAAALVTMTEYDETFDLPV 297          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SHEDO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=gpmI PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.098e-24
Identity = 68/201 (33.83%), Postives = 113/201 (56.22%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLP 603
            +H++GLLS GGVHS  + ++ + + A +RGAK++ LH   DGRD    S+ G +     DL    G+G   +IAS  GR Y  MDR +N WD V + ++    G+    + +AV+A++    + + ND+++    I D  G+    + DGD+++  NFRADR   + +++   DFD F+R   PKI +  + +Y  ++  P
Sbjct:  113 VHIMGLLSPGGVHSHEEHIEAMCRMAVKRGAKQVYLHAFLDGRDTPPRSAKGSLAHF-GDLFTTLGQG---RIASVIGR-YYAMDR-DNRWDRVSQAYELITQGKGKFSYSNAVDALEAAYSR-DENDEFVAASSITDAQGQTAS-LNDGDSLIFMNFRADRARQITRSVINADFDGFERAVTPKINFVTLTEYAADISAP 305          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SALPB (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=gpmI PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.098e-24
Identity = 71/202 (35.15%), Postives = 114/202 (56.44%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  D +  +++ A+ERGA++I LH   DGRD    S+   ++  E   A L GKG   ++AS  GR Y  MDR +N WD V++ +D   L +   +  +AV  ++    + + ND+++   VI+ E G+A   + DGD ++  NFRADR   + +A    DFD F R +   + +  + +Y  ++K  V
Sbjct:  113 VHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAEASLKKFEDKFAAL-GKG---RVASIVGR-YYAMDR-DNRWDRVEKAYDLMTLAQGEFQADTAVAGLQAAYAR-DENDEFVKATVILAE-GQADAAMEDGDTLIFMNFRADRAREITRAFVNADFDGFARKKVVNLNFVMLTEYAADIKTAV 306          
The following BLAST results are available for this feature:
BLAST of CF417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_SHESH2.402e-2434.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SACD22.402e-2438.712,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MAGSM2.402e-2438.002,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOK52.402e-2436.682,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACAN2.402e-2439.892,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEPG3.137e-2438.612,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_OCEIH3.137e-2439.342,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_NATPD3.137e-2439.602,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEDO4.098e-2433.832,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SALPB4.098e-2435.152,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-272 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417342 ID=CF417342; Name=CF417342; organism=Citrus sinensis; type=EST; length=625bp
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGC
GTAGGATTCGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAA
AGGTGTTGACGCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGA
TGGACCGTTATGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCC
CAAGTTCTTGGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGT
CAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCAT
TTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGT
GATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGC
TAAGGCCCTTGAATATGAAGATTTTGACNAATTTGATCGAGTTCGGTTCC
CTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTT
CCCGTCATTACCTTGTGTCTCCTCC
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