CF417342

Overview
NameCF417342
Unique NameCF417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12501 contig Csv1_Contig12501:464..1089. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI2_METBF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=gpmI2 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.098e-24
Identity = 71/211 (33.65%), Postives = 110/211 (52.13%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNAND---------QYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LHL+GL S GG+HS +  L  LLK   E+  K++ +H   DGRD    +++G ++ ++    E      +A+IA+  GR Y  MDR +  WD  K  +DA   G AP+   +A  AV     +   ++         Q +   VI ++  K V  + D D+V+ FNFRADR   +  A   +DFD F R + P++ +  M QYD  L++P+
Sbjct:  113 LHLMGLASCGGIHSYMPHLHALLKLVQEKDLKKVYIHAFLDGRDEPPKAALGDIKKLDAFCKEHG----NAKIATVSGRYYA-MDR-DKRWDRTKLAYDALTRGVAPYTAPNAETAVSNAYSRGETDEFVKPTIITEQVITEQVITEQAEKPVATVQDNDSVIFFNFRADRARQITWAFVKDDFDGFMREKRPEVYFVCMTQYDETLEVPI 317          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_CLOD6 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Clostridium difficile (strain 630) GN=gpmI PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.989e-24
Identity = 66/180 (36.67%), Postives = 109/180 (60.56%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR 540
            LH++GLLSDGGVHS +D L+ ++K A ++G +++ +H  TDGRD    S++ + + ++  + E+   GV  + A+  GR Y  MDR +  W+ V+  ++A V G    K  S  EA++   +    ND+++ P VI+ ++ K VG I + D+++ FNFR DR   + +AL  E+FD F R
Sbjct:  109 LHVMGLLSDGGVHSHIDHLKAIIKMAKDKGVQKVYVHAFTDGRDTDPQSALEYAKEVQASMDEI---GV-GEFATVSGR-YYAMDR-DKRWERVELAYNAMVRG-IGEKANSIEEAIQNSYDD-GKNDEFIMPTVIMKDD-KPVGSIKENDSIIFFNFRPDRARQITRALVCEEFDGFKR 279          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SALTY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Salmonella typhimurium GN=gpmI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.192e-23
Identity = 71/202 (35.15%), Postives = 113/202 (55.94%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  D +  +++ A+ERGA++I LH   DGRD    S+   ++  E   A L GKG   ++AS  GR Y  MDR +N WD V++ +D   L +   +  +AV  ++    + + ND+++   VI  E G+A   + DGD ++  NFRADR   + +A    DFD F R +   + +  + +Y  ++K  V
Sbjct:  113 VHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAEASLKKFEDKFAAL-GKG---RVASIVGR-YYAMDR-DNRWDRVEKAYDLMTLAQGEFQADTAVAGLQAAYAR-DENDEFVKATVIRAE-GQADAAMEDGDTLIFMNFRADRAREITRAFVNADFDGFARKKVVNLNFVMLTEYAADIKTAV 306          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SALTI (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Salmonella typhi GN=gpmI PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.192e-23
Identity = 71/202 (35.15%), Postives = 113/202 (55.94%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  D +  +++ A+ERGA++I LH   DGRD    S+   ++  E   A L GKG   ++AS  GR Y  MDR +N WD V++ +D   L +   +  +AV  ++    + + ND+++   VI  E G+A   + DGD ++  NFRADR   + +A    DFD F R +   + +  + +Y  ++K  V
Sbjct:  113 VHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAEASLKKFEDKFAAL-GKG---RVASIVGR-YYAMDR-DNRWDRVEKAYDLMTLAQGEFQADTAVAGLQAAYAR-DENDEFVKATVIRAE-GQADAAMEDGDTLIFMNFRADRAREITRAFVNADFDGFARKKVVNLNFVMLTEYAADIKTAV 306          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SALPA (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Salmonella paratyphi A GN=gpmI PE=3 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.192e-23
Identity = 71/202 (35.15%), Postives = 113/202 (55.94%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  D +  +++ A+ERGA++I LH   DGRD    S+   ++  E   A L GKG   ++AS  GR Y  MDR +N WD V++ +D   L +   +  +AV  ++    + + ND+++   VI  E G+A   + DGD ++  NFRADR   + +A    DFD F R +   + +  + +Y  ++K  V
Sbjct:  113 VHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAEASLKKFEDKFAAL-GKG---RVASIVGR-YYAMDR-DNRWDRVEKAYDLMTLAQGEFQADTAVAGLQAAYAR-DENDEFVKATVIRAE-GQADAAMEDGDTLIFMNFRADRAREITRAFVNADFDGFARKKVVNLNFVMLTEYAADIKTAV 306          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_PSEMY (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas mendocina (strain ymp) GN=gpmI PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.557e-23
Identity = 76/201 (37.81%), Postives = 108/201 (53.73%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLP 603
            +H++GLLSDGGVHS  D +  + + A+ RGA++I LH   DGRD    S+   +E ++   A L GKG   +IAS  GR Y  MDR +N WD V++ +   V G       SAVE ++   E+  +++     FV     G  V  + DGDAVV  NFRADR   L +A     F  F+R R P++ +  + QY   +  P
Sbjct:  113 VHILGLLSDGGVHSHQDHIVAMAELAARRGAEKIYLHAFLDGRDTPPKSAQPSIELLDAAFARL-GKG---RIASLTGR-YFAMDR-DNRWDRVEQAYHLIVDGAGQFNAASAVEGLQAAYERGESDE-----FVKATTIGAPV-QVEDGDAVVFMNFRADRARELTRAFVEPGFQEFERKRAPQVGFVMLTQYAASIPAP 301          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_BACSK (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Bacillus clausii (strain KSM-K16) GN=gpmI PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.557e-23
Identity = 67/180 (37.22%), Postives = 105/180 (58.33%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDR 540
            LH+ GLLSDGG+HS +D +  LL  A ++  +R+ +H   DGRDV   S+  +++ ++    E+ G G   ++A+  GR Y  MDR +  WD V++ + A V GE P  +K+ +E +    +  N  D+++ P VI +E+G  V  + D DAV+  NFR DR + L++    EDF  FDR
Sbjct:  111 LHIYGLLSDGGIHSHIDHIYALLDMAKQQNVERVYVHGFLDGRDVGPTSAEVYLKGLQDKFDEV-GLG---KLATVHGR-YYAMDR-DKRWDRVEKSYRAMVYGEGP-SYKNGLELLDDSYKN-NIVDEFVIPSVITEEDGTPVATVKDDDAVIFCNFRPDRAIQLSQVFTNEDFRGFDR 282          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_THERP (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.034e-23
Identity = 73/186 (39.25%), Postives = 101/186 (54.30%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKAL-EYEDFDXFDRVRFPK 555
            LHL+GL+ DGGVHS    L  LL+ A+  G  R+ +H  TDGRD    S +  +  +   L  LR       +A+  GR Y  MDR +  W+  K  +DA V G      +S +EA+++   Q    D+++ P VIVD  GK +  I DGDAV+ FNFRADR   L +AL +   F  F R R+P+
Sbjct:  112 LHLMGLIGDGGVHSHQRHLLALLELAARAGISRVAVHAFTDGRDTAPTSGIEHLRELLAALDRLR----TGFVATVSGR-YYAMDR-DKRWERTKLAYDAIVCG-LGQTARSPLEAIERSYAQ-GITDEFIVPTVIVDAEGKPLATINDGDAVIFFNFRADRARQLTQALTDAGGFTAFPRCRWPR 289          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SHEHH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shewanella halifaxensis (strain HAW-EB4) GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.034e-23
Identity = 69/202 (34.16%), Postives = 111/202 (54.95%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  D ++ + + + +RGAK++ LH   DGRD    S+   +   E +L +  G G   Q+AS  GR Y  MDR +N WD V + ++    G+  H+  SAVE ++    + + ND+++    I D  G  +  + D DA++  NFRADR   + ++    DFD F R   PKI +  + +Y  ++K  +
Sbjct:  113 VHIMGLLSPGGVHSHQDHIEAMCRLSVKRGAKKVYLHAFLDGRDTPPRSAKPGLAHFE-ELFKTLGTG---QVASLIGR-YYAMDR-DNRWDRVSQAYELITEGKGLHQATSAVEGIEAAYTR-DENDEFVGSTAIPDAQGNII-KLEDNDALIFMNFRADRARQITRSFINADFDGFKRAVTPKINFVMLTEYAADIKAAI 306          
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_PSEPF (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Pseudomonas fluorescens (strain Pf0-1) GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.034e-23
Identity = 75/201 (37.31%), Postives = 109/201 (54.23%), Query Frame = 1
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLP 603
            +H +GLLSDGGVHS  D L  + + A +RGA++I LH   DGRD    S+   +E ++     L GKG   +IAS  GR Y  MDR +N WD V + ++  V G+      +A E ++    +  +++     FV     G+ V  + DGDAVV  NFRADR   L++    + F  F+R R PK++Y G+ QY   +  P
Sbjct:  113 VHFMGLLSDGGVHSHQDHLIAMAELAFKRGAEKIYLHAFLDGRDTPPKSAASSIELLDATFQAL-GKG---RIASLIGR-YYAMDR-DNRWDRVAQAYNLIVDGKGEINAATAQEGLEAAYARGESDE-----FVKATSIGEPV-KVEDGDAVVFMNFRADRARELSRVFVEDGFKEFERARQPKVQYVGLTQYAESIPAP 301          
The following BLAST results are available for this feature:
BLAST of CF417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI2_METBF4.098e-2433.652,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_CLOD66.989e-2436.672,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SALTY1.192e-2335.152,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SALTI1.192e-2335.152,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SALPA1.192e-2335.152,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEMY1.557e-2337.812,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_BACSK1.557e-2337.222,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_THERP2.034e-2339.252,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHEHH2.034e-2334.162,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PSEPF2.034e-2337.312,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-272 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417342 ID=CF417342; Name=CF417342; organism=Citrus sinensis; type=EST; length=625bp
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGC
GTAGGATTCGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAA
AGGTGTTGACGCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGA
TGGACCGTTATGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCC
CAAGTTCTTGGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGT
CAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCAT
TTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGT
GATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGC
TAAGGCCCTTGAATATGAAGATTTTGACNAATTTGATCGAGTTCGGTTCC
CTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTT
CCCGTCATTACCTTGTGTCTCCTCC
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