CF417342

Overview
NameCF417342
Unique NameCF417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12501 contig Csv1_Contig12501:464..1089. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SHISS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shigella sonnei (strain Ss046) GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 71/202 (35.15%), Postives = 114/202 (56.44%), Query Frame = 1 
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  D +  +++ A+ERGA++I LH   DGRD    S+   ++  E+  A L GKG   ++AS  GR Y  MDR +N WD V++ +D   L +   +  +AV  ++    + + ND+++   VI  E G+    + DGDA++  NFRADR   + +A    DFD F R +   + +  + +Y  ++K  V
Sbjct:  113 VHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAESSLKKFEEKFAAL-GKG---RVASIIGR-YYAMDR-DNRWDRVEKAYDLLTLAQGEFQADTAVAGLQAAYAR-DENDEFVKATVIRAE-GQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAADIKTAV 306
[Close]
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SHIFL (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shigella flexneri GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 71/202 (35.15%), Postives = 114/202 (56.44%), Query Frame = 1 
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  D +  +++ A+ERGA++I LH   DGRD    S+   ++  E+  A L GKG   ++AS  GR Y  MDR +N WD V++ +D   L +   +  +AV  ++    + + ND+++   VI  E G+    + DGDA++  NFRADR   + +A    DFD F R +   + +  + +Y  ++K  V
Sbjct:  113 VHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAESSLKKFEEKFAAL-GKG---RVASIIGR-YYAMDR-DNRWDRVEKAYDLLTLAQGEFQADTAVAGLQAAYAR-DENDEFVKATVIRAE-GQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAADIKTAV 306
[Close]
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SHIDS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 71/202 (35.15%), Postives = 114/202 (56.44%), Query Frame = 1 
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  D +  +++ A+ERGA++I LH   DGRD    S+   ++  E+  A L GKG   ++AS  GR Y  MDR +N WD V++ +D   L +   +  +AV  ++    + + ND+++   VI  E G+    + DGDA++  NFRADR   + +A    DFD F R +   + +  + +Y  ++K  V
Sbjct:  113 VHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAESSLKKFEEKFAAL-GKG---RVASIIGR-YYAMDR-DNRWDRVEKAYDLLTLAQGEFQADTAVAGLQAAYAR-DENDEFVKATVIRAE-GQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAADIKTAV 306
[Close]
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SHIBS (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Shigella boydii serotype 4 (strain Sb227) GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 71/202 (35.15%), Postives = 114/202 (56.44%), Query Frame = 1 
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  D +  +++ A+ERGA++I LH   DGRD    S+   ++  E+  A L GKG   ++AS  GR Y  MDR +N WD V++ +D   L +   +  +AV  ++    + + ND+++   VI  E G+    + DGDA++  NFRADR   + +A    DFD F R +   + +  + +Y  ++K  V
Sbjct:  113 VHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAESSLKKFEEKFAAL-GKG---RVASIIGR-YYAMDR-DNRWDRVEKAYDLLTLAQGEFQADTAVAGLQAAYAR-DENDEFVKATVIRAE-GQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAADIKTAV 306
[Close]
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_SALCH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Salmonella choleraesuis GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 70/202 (34.65%), Postives = 113/202 (55.94%), Query Frame = 1 
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  D +  +++ A+ERGA++I LH   DGRD    S+   ++  E   A  +GKG   ++AS  GR Y  MDR +N WD V++ +D   L +   +  +AV  ++    + + ND+++   VI  E G+A   + DGD ++  NFRADR   + +A    DFD F R +   + +  + +Y  ++K  V
Sbjct:  113 VHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAEASLKKFEDKFA-AQGKG---RVASIVGR-YYAMDR-DNRWDRVEKAYDLMTLAQGEFQADTAVAGLQAAYAR-DENDEFVKATVIRAE-GQADAAMEDGDTLIFMNFRADRAREITRAFVNADFDGFARKKVVNLNFVMLTEYAADIKTTV 306
[Close]
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_FRAP2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 71/202 (35.15%), Postives = 114/202 (56.44%), Query Frame = 1 
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            LHL+GLLS GGVHS  + +  ++K A ++G KR+ LH   DGRD    S+   ++  + DL +    G    IAS  GR Y  MDR +N WD V++ ++A V  +A     SA+EA+++   +  +++  +P    + ++GK +  + D D+V+  NFRADR   ++ A   E+FD F + R   I +  + +YD +LK  V
Sbjct:  110 LHLMGLLSPGGVHSHEEHIFEMIKIAKQKGVKRVYLHAFLDGRDTPPRSAESSIKKTD-DLLQKLNLG---YIASVSGR-YYAMDR-DNRWDRVEKAYNAIVNADAEFVCNSALEALEESYARDQSDEFVIP--TCIQKDGKLI-KVEDNDSVIFMNFRADRAREISHAFTDENFDHFPKDRHLNINFTTLTEYDSKLKCNV 302
[Close]
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_ECOLI (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli (strain K12) GN=gpmI PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 71/202 (35.15%), Postives = 114/202 (56.44%), Query Frame = 1 
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  D +  +++ A+ERGA++I LH   DGRD    S+   ++  E+  A L GKG   ++AS  GR Y  MDR +N WD V++ +D   L +   +  +AV  ++    + + ND+++   VI  E G+    + DGDA++  NFRADR   + +A    DFD F R +   + +  + +Y  ++K  V
Sbjct:  113 VHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAESSLKKFEEKFAAL-GKG---RVASIIGR-YYAMDR-DNRWDRVEKAYDLLTLAQGEFQADTAVAGLQAAYAR-DENDEFVKATVIRAE-GQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAADIKTAV 306
[Close]
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_ECOLC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 71/202 (35.15%), Postives = 114/202 (56.44%), Query Frame = 1 
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  D +  +++ A+ERGA++I LH   DGRD    S+   ++  E+  A L GKG   ++AS  GR Y  MDR +N WD V++ +D   L +   +  +AV  ++    + + ND+++   VI  E G+    + DGDA++  NFRADR   + +A    DFD F R +   + +  + +Y  ++K  V
Sbjct:  113 VHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAESSLKKFEEKFAAL-GKG---RVASIIGR-YYAMDR-DNRWDRVEKAYDLLTLAQGEFQADTAVAGLQAAYAR-DENDEFVKATVIRAE-GQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAADIKTAV 306
[Close]
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_ECOL5 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 71/202 (35.15%), Postives = 114/202 (56.44%), Query Frame = 1 
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  D +  +++ A+ERGA++I LH   DGRD    S+   ++  E+  A L GKG   ++AS  GR Y  MDR +N WD V++ +D   L +   +  +AV  ++    + + ND+++   VI  E G+    + DGDA++  NFRADR   + +A    DFD F R +   + +  + +Y  ++K  V
Sbjct:  113 VHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAESSLKKFEEKFAAL-GKG---RVASIIGR-YYAMDR-DNRWDRVEKAYDLLTLAQGEFQADTAVAGLQAAYAR-DENDEFVKATVIRAE-GQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAADIKTAV 306
[Close]
BLAST of CF417342 vs. ExPASy Swiss-Prot
Match: GPMI_ECOK1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Escherichia coli O1:K1 / APEC GN=gpmI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.656e-23
Identity = 71/202 (35.15%), Postives = 114/202 (56.44%), Query Frame = 1 
Query:    1 LHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGKGVDAQIASGGGRMYVTMDRYENDWDVVKRGWDAQVLGEAPHKFKSAVEAVKKLREQPNANDQYLPPFVIVDENGKAVGPIVDGDAVVTFNFRADRMVMLAKALEYEDFDXFDRVRFPKIRYAGMLQYDGELKLPV 606
            +H++GLLS GGVHS  D +  +++ A+ERGA++I LH   DGRD    S+   ++  E+  A L GKG   ++AS  GR Y  MDR +N WD V++ +D   L +   +  +AV  ++    + + ND+++   VI  E G+    + DGDA++  NFRADR   + +A    DFD F R +   + +  + +Y  ++K  V
Sbjct:  113 VHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAESSLKKFEEKFAAL-GKG---RVASIIGR-YYAMDR-DNRWDRVEKAYDLLTLAQGEFQADTAVAGLQAAYAR-DENDEFVKATVIRAE-GQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAADIKTAV 306
The following BLAST results are available for this feature:
BLAST of CF417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_SHISS2.656e-2335.152,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHIFL2.656e-2335.152,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHIDS2.656e-2335.152,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SHIBS2.656e-2335.152,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_SALCH2.656e-2334.652,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_FRAP22.656e-2335.152,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECOLI2.656e-2335.152,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECOLC2.656e-2335.152,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECOL52.656e-2335.152,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_ECOK12.656e-2335.152,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-272 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417342 ID=CF417342; Name=CF417342; organism=Citrus sinensis; type=EST; length=625bp
TTGCACCTTATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGA
TCAACTTCAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAA
TTCGTCTTCATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGC
GTAGGATTCGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGAA
AGGTGTTGACGCACAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGA
TGGACCGTTATGAGAATGATTGGGATGTTGTCAAACGAGGATGGGATGCC
CAAGTTCTTGGAGAAGCTCCACACAAGTTTAAGAGCGCCGTTGAAGCTGT
CAAAAAACTAAGGGAACAGCCCAATGCCAATGACCAGTACTTACCTCCAT
TTGTCATTGTTGATGAAAATGGAAAGGCTGTGGGTCCAATAGTAGATGGT
GATGCAGTTGTAACTTTCAACTTCCGAGCTGATCGAATGGTTATGCTTGC
TAAGGCCCTTGAATATGAAGATTTTGACNAATTTGATCGAGTTCGGTTCC
CTAAAATCCGTTATGCTGGAATGCTTCAATATGATGGGGAGTTGAAACTT
CCCGTCATTACCTTGTGTCTCCTCC
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