CF417347

Overview
NameCF417347
Unique NameCF417347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417347 vs. ExPASy Swiss-Prot
Match: 6PGD_CHLTR (6-phosphogluconate dehydrogenase, decarboxylating OS=Chlamydia trachomatis GN=gnd PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.896e-31
Identity = 64/159 (40.25%), Postives = 88/159 (55.35%), Query Frame = 3
Query:    3 LKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELA 479
            LK+   L+ E++ N+F EWN+ +L S+LI   A             +   +LD  G KGTG+W  + A    V    I  S+ AR+LS  KE R +AA+ F   G  +      +    I+DVR+ALYA+KI SYAQG  L++  S +KGWDL LGELA
Sbjct:  205 LKTRLNLSLEQIGNIFFEWNQTDLNSYLIGAAAAVLIAKDENGNA-IASTILDVAGQKGTGRWVAEDAIKAGVPMSLIIESVLARYLSTWKEVRTKAAQEFP--GIPLLCQPPQEASAFIEDVREALYAAKIISYAQGFMLLKQVSQDKGWDLNLGELA 360          

HSP 2 Score: 50.0618 bits (118), Expect = 1.896e-31
Identity = 22/62 (35.48%), Postives = 41/62 (66.13%), Query Frame = 2
Query:  500 CIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSL 685
            CII++ FLD+I + ++ + +  +L++   F K + D ++ +RR V  AI SG++ P +SS+L
Sbjct:  367 CIIQSAFLDKIHQGFENSPEAHSLILQDYFKKVLFDSETGFRRAVLHAIGSGVAIPCLSSAL 428          
BLAST of CF417347 vs. ExPASy Swiss-Prot
Match: 6PGD_CITDI (6-phosphogluconate dehydrogenase, decarboxylating (Fragment) OS=Citrobacter diversus GN=gnd PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.161e-31
Identity = 81/186 (43.55%), Postives = 106/186 (56.99%), Query Frame = 3
Query:    3 LKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARDLXRG--VALSVLCSLTESRRHTIGM 554
            LK    L+NEEL   FTEWNKGEL S+LI+IT             YLVD +LD+   KGTGKWT Q + DL      I  S+ AR++S LKE+RV A+KV      G ++  A DK + I+ VR+ALY  KI SYAQG + +RA S E  WDL  GE+A+    G  +    L  +T++     G+
Sbjct:  193 LKGGLNLSNEELAETFTEWNKGELNSYLIDITKDIFTKKDEEGK-YLVDVILDEAANKGTGKWTSQSSLDLGEPLSLITESVFARYISSLKEQRVAASKVLS----GPKAQLAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASDEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDAYAENAGI 373          
BLAST of CF417347 vs. ExPASy Swiss-Prot
Match: 6PGD_KLETE (6-phosphogluconate dehydrogenase, decarboxylating (Fragment) OS=Klebsiella terrigena GN=gnd PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.128e-31
Identity = 80/186 (43.01%), Postives = 106/186 (56.99%), Query Frame = 3
Query:    3 LKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARDLXRG--VALSVLCSLTESRRHTIGM 554
            LK    L+NEEL   FTEWN+GEL S+LI+IT             YLVD +LD+   KGTGKWT Q + DL      I  S+ AR++S LK++RV A+KV      G Q+  A DK + I+ VR+ALY  KI SYAQG + +RA S E  WDL  GE+A+    G  +    L  +T++     G+
Sbjct:  193 LKGGLALSNEELATTFTEWNQGELSSYLIDITKDIFTKKDEEGK-YLVDVILDEAANKGTGKWTSQSSLDLGEPLSLITESVFARYISSLKDQRVAASKVLT----GPQAQPASDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASNEYSWDLNYGEIAKIFRAGCIIRAQFLQKITDAYEENAGI 373          
BLAST of CF417347 vs. ExPASy Swiss-Prot
Match: 6PGD_AGGAC (6-phosphogluconate dehydrogenase, decarboxylating OS=Aggregatibacter actinomycetemcomitans GN=gnd PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.244e-31
Identity = 69/159 (43.40%), Postives = 87/159 (54.72%), Query Frame = 3
Query:    3 LKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELA 479
            LK    L+++ELQ  F EW   EL S+LI+ITA             LVDKVLD  G KGTGKWT   A D  +    I  S+ AR +S  K++RV A+K+F      V+     DK+  I+ VR+AL ASKI SYAQG  LIR  S    W++  G  A
Sbjct:  206 LKEGVGLSDDELQATFNEWRNTELDSYLIDITADILGYKDADGSR-LVDKVLDTAGQKGTGKWTGINALDFGIPLTLITESVFARCVSAFKDQRVAASKLFHKTIGKVEG----DKKVWIEAVRKALLASKIISYAQGFMLIREASEHFNWNINYGNTA 359          

HSP 2 Score: 47.7506 bits (112), Expect = 9.244e-31
Identity = 26/62 (41.94%), Postives = 36/62 (58.06%), Query Frame = 2
Query:  500 CIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSL 685
            CIIR+ FL  I+ AY+ N DL  L  D  F   + +  S WR+VV  +I  GI  P M+S++
Sbjct:  366 CIIRSRFLGNIRDAYEANPDLIFLGSDSYFKGILENAMSDWRKVVAKSIEVGIPMPCMASAI 427          
BLAST of CF417347 vs. ExPASy Swiss-Prot
Match: 6PGD_KLEPN (6-phosphogluconate dehydrogenase, decarboxylating OS=Klebsiella pneumoniae GN=gnd PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.495e-30
Identity = 79/186 (42.47%), Postives = 104/186 (55.91%), Query Frame = 3
Query:    3 LKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARDLXRG--VALSVLCSLTESRRHTIGM 554
            LK    L+NEEL   FTEWN+GEL S+LI+IT             YLVD +LD+   KGTGKWT Q + DL      I  S+ AR++S LK++RV A+KV      G Q+    DK   I+ VR+ALY  KI SYAQG + +RA S E  WDL  GE+A+    G  +    L  +T++     G+
Sbjct:  204 LKGGLALSNEELAQTFTEWNEGELSSYLIDITKDIFTKKDEEGK-YLVDVILDEAANKGTGKWTSQSSLDLGEPLSLITESVFARYISSLKDQRVAASKVLS----GPQAQPVGDKAGFIEKVRRALYLGKIVSYAQGFSQLRAASDEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDAYAQNAGI 384          
BLAST of CF417347 vs. ExPASy Swiss-Prot
Match: 6PGD_KLEPL (6-phosphogluconate dehydrogenase, decarboxylating (Fragment) OS=Klebsiella planticola GN=gnd PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.961e-30
Identity = 77/186 (41.40%), Postives = 106/186 (56.99%), Query Frame = 3
Query:    3 LKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARDLXRG--VALSVLCSLTESRRHTIGM 554
            LK    L+NEEL   FT+WN+GEL S+LI+IT             YLVD +LD+   KGTGKWT Q + DL      I  S+ AR++S LK++RV A+KV      G ++  A DK + ++ VR+ALY  KI SYAQG + +RA S E  WDL  GE+A+    G  +    L  +T++     G+
Sbjct:  193 LKGGLALSNEELATTFTKWNEGELSSYLIDITKDIFTKKDEEGK-YLVDVILDEAANKGTGKWTSQSSLDLGEPLSLITESVFARYISSLKDQRVAASKVLT----GPKAQPAGDKAEFVEKVRRALYLGKIVSYAQGFSQLRAASNEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDAYEQNAGI 373          
BLAST of CF417347 vs. ExPASy Swiss-Prot
Match: 6PGD_HAEIN (6-phosphogluconate dehydrogenase, decarboxylating OS=Haemophilus influenzae GN=gnd PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.295e-29
Identity = 65/153 (42.48%), Postives = 85/153 (55.56%), Query Frame = 3
Query:   21 LTNEELQNVFTEWNKGELLSFLIEITAXXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELA 479
            L+ EE+Q +F EW   EL S+LI+IT              LV+K+LD  G KGTGKWT   A D  +    I  S+ AR +S  K++RV A ++F      V+     DK+  I+ VR+AL ASKI SYAQG  LIR  S + GWD+  G  A
Sbjct:  212 LSYEEMQAIFAEWKNTELDSYLIDITTDILGYKDASGEP-LVEKILDTAGQKGTGKWTGINALDFGIPLTLITESVFARCVSSFKDQRVAANQLFGKTITPVEG----DKKVWIEAVRKALLASKIISYAQGFMLIREASEQFGWDINYGATA 359          

HSP 2 Score: 45.4394 bits (106), Expect = 1.295e-29
Identity = 25/62 (40.32%), Postives = 36/62 (58.06%), Query Frame = 2
Query:  500 CIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSL 685
            CIIR+ FL  I+ AY+ N +L  L  D  F   + +  S WR+VV  +I  GI  P M+S++
Sbjct:  366 CIIRSRFLGNIRDAYEANPNLVFLGSDSYFKGILENALSDWRKVVAKSIEVGIPMPCMASAI 427          
BLAST of CF417347 vs. ExPASy Swiss-Prot
Match: 6PGD_PIG (6-phosphogluconate dehydrogenase, decarboxylating (Fragment) OS=Sus scrofa GN=PGD PE=2 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 1.706e-29
Identity = 49/107 (45.79%), Postives = 66/107 (61.68%), Query Frame = 3
Query:  138 YLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQ-AVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGW 455
            +L+ K+ D  G KGTGKWT   A +  V    I  ++ AR LS LK+ERV+A+K  K    G Q  Q + DK+  ++D+R+ALYASKI SY QG  L+R  + E GW
Sbjct:   17 HLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERVQASKKLK----GPQKIQFSGDKKSFLEDIRKALYASKIISYTQGFMLLRQAAAEFGW 119          

HSP 2 Score: 61.6178 bits (148), Expect = 1.706e-29
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = 2
Query:  500 CIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSL 685
            CIIR+VFL +IK A+DRN  L NLL+D  F   + D Q +WRR V   + +GI  P  +++L
Sbjct:  133 CIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVEDCQDSWRRAVSTGVQTGIPMPCFTTAL 194          
BLAST of CF417347 vs. ExPASy Swiss-Prot
Match: 6PGD_CHLMU (6-phosphogluconate dehydrogenase, decarboxylating OS=Chlamydia muridarum GN=gnd PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.722e-29
Identity = 64/159 (40.25%), Postives = 89/159 (55.97%), Query Frame = 3
Query:    3 LKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELA 479
            LKS   L+ E++ N+F EWN+ +L S+L+  +A             +   +LD  G KGTG+W  + A    V    I  S+ AR+LS  KE R +AA+ F       Q +Q  +   LI+D R+ALYA+KI SYAQG  L++  S E+ WDL LGELA
Sbjct:  204 LKSRLDLSLEQIGNIFFEWNQTDLNSYLMGASAAVLTAKDENGVA-VASTILDVAGQKGTGRWVAEDAIKAGVPMSLIIESVLARYLSAWKEVRRQAAREFPVASLLYQPSQ--EASVLIEDAREALYAAKIISYAQGFMLLKQISEERNWDLNLGELA 359          

HSP 2 Score: 43.5134 bits (101), Expect = 3.722e-29
Identity = 17/62 (27.42%), Postives = 40/62 (64.52%), Query Frame = 2
Query:  500 CIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINSGISTPGMSSSL 685
            CII++ FLD+I + ++   D  +L++   F   +++ ++ +RR +  A+ +G++ P ++S+L
Sbjct:  366 CIIQSAFLDKIHQGFESCPDAHSLMLQDYFKNVLLNSETGFRRAILHAVGAGVAIPCLASAL 427          
BLAST of CF417347 vs. ExPASy Swiss-Prot
Match: 6PGD9_ECOLX (6-phosphogluconate dehydrogenase, decarboxylating OS=Escherichia coli GN=gnd PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.124e-28
Identity = 76/186 (40.86%), Postives = 103/186 (55.38%), Query Frame = 3
Query:    3 LKSVGKLTNEELQNVFTEWNKGELLSFLIEITAXXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEAAKVFKSGGFGVQSNQAVDKQKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELARDLXRG--VALSVLCSLTESRRHTIGM 554
            LK    L+NEEL   FTEWN+GEL S+L +IT             YLVD +LD+   KGTGKWT Q + DL      I  S+  R++S LK++RV A+KV      G Q+  A DK + I+ VR+ALY  KI SYAQG + +RA S E  W+L   E+A+    G  +    L  +T++     G+
Sbjct:  204 LKGGLTLSNEELAQTFTEWNEGELSSYLYDITKDIFTKKDEEGK-YLVDVILDEAANKGTGKWTSQSSLDLGEPLSLITESVFPRYISSLKDQRVAASKVLS----GPQAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASDEYNWELNYAEIAKIFRAGCIIRAQFLQKITDAYAQNAGI 384          
The following BLAST results are available for this feature:
BLAST of CF417347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
6PGD_CHLTR1.896e-3140.256-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CITDI3.161e-3143.556-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_KLETE4.128e-3143.016-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_AGGAC9.244e-3143.406-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_KLEPN3.495e-3042.476-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_KLEPL5.961e-3041.406-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_HAEIN1.295e-2942.486-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_PIG1.706e-2945.796-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CHLMU3.722e-2940.256-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD9_ECOLX1.124e-2840.866-phosphogluconate dehydrogenase, decarboxylating ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-277 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417347 ID=CF417347; Name=CF417347; organism=Citrus sinensis; type=EST; length=686bp
TACTGAAATCTGTTGGAAAGTTGACAAATGAGGAACTGCAAAATGTTTTC
ACAGAATGGAACAAGGGGGAGCTTCTCAGCTTCTTGATTGAAATCACTGC
AGATATTTTTGGAATAAAGGATGATAAGGGAGATGGTTACTTGGTTGACA
AGGTTTTGGACAAAACAGGTATGAAGGGTACTGGCAAATGGACTGTACAG
CAAGCTGCTGATCTATCAGTTGCAGCTCCCACTATTGCATCTTCTTTGGA
TGCAAGGTTCCTTAGTGGTTTAAAGGAAGAAAGAGTTGAAGCTGCCAAAG
TCTTTAAATCAGGTGGCTTTGGTGTTCAGTCTAACCAAGCTGTGGACAAG
CAGAAGTTGATTGATGATGTGAGGCAGGCTCTTTATGCATCCAAGATATG
TAGTTACGCACAGGGGATGAATCTTATTCGTGCAAAGAGTATTGAAAAAG
GATGGGACTTGAAGTTGGGGGAACTGGCTAGGGATTTGGNAAGGGGGGTT
GCATTATCCGTGCTGTGTTCCTTGACAGAATCAAGAAGGCATACGATAGG
AATGCTGATCTGGCAAACCTTCTTGTGGACCCTGAGTTTGCAAAGGAAAT
TGTTGATAGGCAGTCTGCCTGGCGAAGAGTTGTTTGCCTTGCTATCAACT
CGGGTATTAGCACACCTGGTATGTCATCCAGTCTTG
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