CF417381

Overview
NameCF417381
Unique NameCF417381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA4_BOVIN (Proteasome subunit alpha type-4 OS=Bos taurus GN=PSMA4 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.297e-61
Identity = 76/119 (63.87%), Postives = 94/119 (78.99%), Query Frame = 1
Query:    1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            RYDSRTTIFSPEGRLYQVEYAMEAIG+AG+ +GIL+ DGV+L  E++   KLL     +EK+YK+++ +AC+VAGI SDAN+L N  R+ AQRY   YQEP+P EQLV +LCD KQ YT
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYT 122          

HSP 2 Score: 101.679 bits (252), Expect = 1.297e-61
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD-DISREEAVQLALKVLSKTM 592
            QFGG RPFGVS L+ GWDK+YGFQLY SDPSGNYGGWK            S+LKQDYK+ +++ + A+ LA+KVL+KTM
Sbjct:  123 QFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTM 201          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA4_RAT (Proteasome subunit alpha type-4 OS=Rattus norvegicus GN=Psma4 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.692e-61
Identity = 76/119 (63.87%), Postives = 94/119 (78.99%), Query Frame = 1
Query:    1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            RYDSRTTIFSPEGRLYQVEYAMEAIG+AG+ +GIL+ DGV+L  E++   KLL     +EK+YK+++ +AC+VAGI SDAN+L N  R+ AQRY   YQEP+P EQLV +LCD KQ YT
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYT 122          

HSP 2 Score: 101.293 bits (251), Expect = 1.692e-61
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD-DISREEAVQLALKVLSKTM 592
            QFGG RPFGVS L+ GWDK+YGFQLY SDPSGNYGGWK            S+LKQDYK+ +++ + A+ LA+KVL+KTM
Sbjct:  123 QFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAVKVLNKTM 201          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA4_MOUSE (Proteasome subunit alpha type-4 OS=Mus musculus GN=Psma4 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.692e-61
Identity = 76/119 (63.87%), Postives = 94/119 (78.99%), Query Frame = 1
Query:    1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            RYDSRTTIFSPEGRLYQVEYAMEAIG+AG+ +GIL+ DGV+L  E++   KLL     +EK+YK+++ +AC+VAGI SDAN+L N  R+ AQRY   YQEP+P EQLV +LCD KQ YT
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYT 122          

HSP 2 Score: 101.293 bits (251), Expect = 1.692e-61
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD-DISREEAVQLALKVLSKTM 592
            QFGG RPFGVS L+ GWDK+YGFQLY SDPSGNYGGWK            S+LKQDYK+ +++ + A+ LA+KVL+KTM
Sbjct:  123 QFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAVKVLNKTM 201          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA4_MACFA (Proteasome subunit alpha type-4 OS=Macaca fascicularis GN=PSMA4 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.876e-61
Identity = 76/119 (63.87%), Postives = 94/119 (78.99%), Query Frame = 1
Query:    1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            RYDSRTTIFSPEGRLYQVEYAMEAIG+AG+ +GIL+ DGV+L  E++   KLL     +EK+YK+++ +AC+VAGI SDAN+L N  R+ AQRY   YQEP+P EQLV +LCD KQ YT
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYT 122          

HSP 2 Score: 100.523 bits (249), Expect = 2.876e-61
Identity = 47/79 (59.49%), Postives = 59/79 (74.68%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD-DISREEAVQLALKVLSKTM 592
            QFGG RPFGVS L+ GWDK+YGFQLY SDP+GNYGGWK            S+LKQDYK+ +++ + A+ LA+KVL+KTM
Sbjct:  123 QFGGKRPFGVSLLYIGWDKHYGFQLYQSDPNGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTM 201          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA4_SCHPO (Probable proteasome subunit alpha type-4 OS=Schizosaccharomyces pombe GN=SPAC13C5.01c PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.084e-60
Identity = 78/118 (66.10%), Postives = 94/118 (79.66%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YDSRTTIFSPEGRLYQVEYA+EAI +AG A+GI++KDG+VL  EKKVTSKLL+   S EK+Y I D++ CAVAG+ +DANILIN AR   Q+Y   + E MP EQLV+ +CD KQGYT
Sbjct:    5 YDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYT 122          

HSP 2 Score: 95.1301 bits (235), Expect = 1.084e-60
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592
            Q+GGLRPFGVSFL+AGWD   G+QL+ S+PSGNYG W+            S+++Q+YKDDI+ +EA  +A+K LSKT+
Sbjct:  123 QYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYKDDINLDEASAMAVKFLSKTL 200          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA4_CAEEL (Proteasome subunit alpha type-4 OS=Caenorhabditis elegans GN=pas-3 PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 4.843e-58
Identity = 76/126 (60.32%), Postives = 94/126 (74.60%), Query Frame = 1
Query:    1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPP 378
            RYDSRTTIFSPEGRLYQVEYAMEAI +AG+ +GILS +G+V+  E+K   KLL  S  TEK+Y++ D+++C VAGI +DANILIN  R  A  Y  +Y E MPVEQLVQ+LC+ KQ YT +    P
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRP 129          

HSP 2 Score: 92.4337 bits (228), Expect = 4.843e-58
Identity = 45/78 (57.69%), Postives = 54/78 (69.23%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592
            Q GG RPFGVS L+ GWDK+YG+QLY SDPSGNY GWK            ++LKQ+YK   + EEA QLA+KVL KT+
Sbjct:  123 QIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEYKSP-NLEEAKQLAIKVLWKTL 199          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA4_DROME (Proteasome subunit alpha type-4 OS=Drosophila melanogaster GN=Pros29 PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 9.740e-56
Identity = 71/119 (59.66%), Postives = 96/119 (80.67%), Query Frame = 1
Query:    1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            RYDSRTTIFSPEGRLYQVEYAMEAI +AG+ +GIL++DG++L  E + T+KLL ++  +EK+Y+++D++ C+VAGI SDAN+L +  R+ AQRY ++Y E +P EQLV  LCD KQ YT
Sbjct:    4 RYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAEDGILLAAECRSTNKLLDSAIPSEKIYRLNDNMVCSVAGITSDANVLTSELRLIAQRYQFSYGEVIPCEQLVSHLCDIKQAYT 122          

HSP 2 Score: 86.6557 bits (213), Expect = 9.740e-56
Identity = 42/82 (51.22%), Postives = 52/82 (63.41%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD----DISREEAVQLALKVLSKTM 592
            Q+GG RPFGVS L+ GWD  YG+QLY SDPSGNYGGWK            S+LKQ+  D     ++  +A  LA+KVLS T+
Sbjct:  123 QYGGKRPFGVSLLYMGWDNKYGYQLYQSDPSGNYGGWKATCIGNNFGAAISMLKQELADKENVKLTLADAKDLAIKVLSMTL 204          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_METJA (Proteasome subunit alpha OS=Methanocaldococcus jannaschii GN=psmA PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.503e-40
Identity = 62/118 (52.54%), Postives = 86/118 (72.88%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   T+FSPEGRLYQVEYA EA+    +AIGI  KDGVVL  ++++TSKL++   S EK+++IDDHVA A +G+++DA +LI+ AR++AQ Y   Y E + +E L + +CD KQ YT
Sbjct:    9 YDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIR-SIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYT 125          

HSP 2 Score: 59.3066 bits (142), Expect = 1.503e-40
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSK 586
            Q GG+RPFGVS L AG DKN   +L+ +DPSG    +K             +L+++Y+DDI+ +E ++LA+  L+K
Sbjct:  126 QHGGVRPFGVSLLIAGIDKNEA-RLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTK 200          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_PYRFU (Proteasome subunit alpha OS=Pyrococcus furiosus GN=psmA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.503e-40
Identity = 57/118 (48.31%), Postives = 85/118 (72.03%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   T+FSP+GRL+QV YA EA+    +A+G+   +GVVL  EK++TS+L++   S EK+++IDDH+A A +GI++DA +L+N AR++AQ Y   Y EP PV  +V+ +CD KQ +T
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCGEGVVLAVEKRITSRLIEPD-SYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIYRLTYGEPAPVSVIVKKICDLKQMHT 126          

HSP 2 Score: 64.6994 bits (156), Expect = 1.503e-40
Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592
            Q+GG+RPFG + L AG +     +LY +DPSG Y  WK            +I ++ Y+DD++ E+A++LAL  L+KTM
Sbjct:  127 QYGGVRPFGAALLMAGINDRP--ELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDDMNLEDAIKLALMALAKTM 202          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.608e-38
Identity = 60/118 (50.85%), Postives = 87/118 (73.73%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   T+FSP+GRL+QVEYA EA+    +A+GI  ++GVVL  +K+VTSKL++   S EK+Y+ID H+  A AG+++DA +L+  AR++AQ Y Y Y EP+ V+ LV+++CD KQ YT
Sbjct:   10 YDRAITVFSPDGRLFQVEYAREAVKRGTTALGIKVEEGVVLGVDKRVTSKLIEPE-SIEKVYQIDTHIGAATAGLVADARVLVERARIEAQTYRYTYGEPIDVDVLVKAICDLKQVYT 126          

HSP 2 Score: 51.6026 bits (122), Expect = 8.608e-38
Identity = 26/78 (33.33%), Postives = 45/78 (57.69%), Query Frame = 2
Query:  347 KVTPQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVL 580
            +V  Q GG+RPFG + L AG D   G +L+ +DPSG     K             + +++Y++D++ +EA++LA++ L
Sbjct:  123 QVYTQHGGVRPFGTALLIAGVDTK-GCRLFETDPSGALTEHKATAIGEGRQEALDVFEEEYREDMTLQEAIELAVRAL 199          
The following BLAST results are available for this feature:
BLAST of CF417381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA4_BOVIN1.297e-6163.87Proteasome subunit alpha type-4 OS=Bos taurus GN=P... [more]
PSA4_RAT1.692e-6163.87Proteasome subunit alpha type-4 OS=Rattus norvegic... [more]
PSA4_MOUSE1.692e-6163.87Proteasome subunit alpha type-4 OS=Mus musculus GN... [more]
PSA4_MACFA2.876e-6163.87Proteasome subunit alpha type-4 OS=Macaca fascicul... [more]
PSA4_SCHPO1.084e-6066.10Probable proteasome subunit alpha type-4 OS=Schizo... [more]
PSA4_CAEEL4.843e-5860.32Proteasome subunit alpha type-4 OS=Caenorhabditis ... [more]
PSA4_DROME9.740e-5659.66Proteasome subunit alpha type-4 OS=Drosophila mela... [more]
PSMA_METJA1.503e-4052.54Proteasome subunit alpha OS=Methanocaldococcus jan... [more]
PSMA_PYRFU1.503e-4048.31Proteasome subunit alpha OS=Pyrococcus furiosus GN... [more]
PSMA_METKA8.608e-3850.85Proteasome subunit alpha OS=Methanopyrus kandleri ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-311 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417381 ID=CF417381; Name=CF417381; organism=Citrus sinensis; type=EST; length=681bp
AGATATGATAGCCGTACCACAATTTTCTCCCCTGAAGGCCGTCTCTATCA
AGTTGAGTATGCAATGGAGGCCATTGGAAATGCTGGTAGTGCAATTGGAA
TATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAAAAGAAGGTTACTTCG
AAGCTCCTGCAAACCTCAACTTCCACTGAGAAGATGTACAAGATTGATGA
TCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTGATGCCAACATCCTAA
TCAACACTGCCAGGGTCCAAGCCCAACGTTACACATATGCCTACCAAGAG
CCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTGTGATACAAAGCAAGG
TTACACCCCAGTTTGGCGGTCTCCGCCCCTTTGGTGTTTCATTTCTTTTT
GCAGGGTGGGACAAAAATTATGGCTTCCAACTTTACATGAGTGATCCTAG
TGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGGTGCAAATAACCAGG
CTGCACAATCAATCCTCAAACAAGATTACAAGGATGATATTTCAAGGGAA
GAAGCAGTTCAACTAGCACTGAAGGTGCTCAGCAAAACCATGGGACAGCA
CCAGTCTTACTTCTGATAAGCTTGATTTAGCTGAGGNTTTCCTGATGCCT
TCTGGCAAAGTGAAGTACCAAGTTTGCTCAC
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