CF417381
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA4_BOVIN (Proteasome subunit alpha type-4 OS=Bos taurus GN=PSMA4 PE=1 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.297e-61 Identity = 76/119 (63.87%), Postives = 94/119 (78.99%), Query Frame = 1 Query: 1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 RYDSRTTIFSPEGRLYQVEYAMEAIG+AG+ +GIL+ DGV+L E++ KLL +EK+YK+++ +AC+VAGI SDAN+L N R+ AQRY YQEP+P EQLV +LCD KQ YT Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYT 122 HSP 2 Score: 101.679 bits (252), Expect = 1.297e-61 Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 2 Query: 359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD-DISREEAVQLALKVLSKTM 592 QFGG RPFGVS L+ GWDK+YGFQLY SDPSGNYGGWK S+LKQDYK+ +++ + A+ LA+KVL+KTM Sbjct: 123 QFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTM 201
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA4_RAT (Proteasome subunit alpha type-4 OS=Rattus norvegicus GN=Psma4 PE=1 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.692e-61 Identity = 76/119 (63.87%), Postives = 94/119 (78.99%), Query Frame = 1 Query: 1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 RYDSRTTIFSPEGRLYQVEYAMEAIG+AG+ +GIL+ DGV+L E++ KLL +EK+YK+++ +AC+VAGI SDAN+L N R+ AQRY YQEP+P EQLV +LCD KQ YT Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYT 122 HSP 2 Score: 101.293 bits (251), Expect = 1.692e-61 Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 2 Query: 359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD-DISREEAVQLALKVLSKTM 592 QFGG RPFGVS L+ GWDK+YGFQLY SDPSGNYGGWK S+LKQDYK+ +++ + A+ LA+KVL+KTM Sbjct: 123 QFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAVKVLNKTM 201
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA4_MOUSE (Proteasome subunit alpha type-4 OS=Mus musculus GN=Psma4 PE=1 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.692e-61 Identity = 76/119 (63.87%), Postives = 94/119 (78.99%), Query Frame = 1 Query: 1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 RYDSRTTIFSPEGRLYQVEYAMEAIG+AG+ +GIL+ DGV+L E++ KLL +EK+YK+++ +AC+VAGI SDAN+L N R+ AQRY YQEP+P EQLV +LCD KQ YT Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYT 122 HSP 2 Score: 101.293 bits (251), Expect = 1.692e-61 Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 2 Query: 359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD-DISREEAVQLALKVLSKTM 592 QFGG RPFGVS L+ GWDK+YGFQLY SDPSGNYGGWK S+LKQDYK+ +++ + A+ LA+KVL+KTM Sbjct: 123 QFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAVKVLNKTM 201
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA4_MACFA (Proteasome subunit alpha type-4 OS=Macaca fascicularis GN=PSMA4 PE=2 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 2.876e-61 Identity = 76/119 (63.87%), Postives = 94/119 (78.99%), Query Frame = 1 Query: 1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 RYDSRTTIFSPEGRLYQVEYAMEAIG+AG+ +GIL+ DGV+L E++ KLL +EK+YK+++ +AC+VAGI SDAN+L N R+ AQRY YQEP+P EQLV +LCD KQ YT Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYT 122 HSP 2 Score: 100.523 bits (249), Expect = 2.876e-61 Identity = 47/79 (59.49%), Postives = 59/79 (74.68%), Query Frame = 2 Query: 359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD-DISREEAVQLALKVLSKTM 592 QFGG RPFGVS L+ GWDK+YGFQLY SDP+GNYGGWK S+LKQDYK+ +++ + A+ LA+KVL+KTM Sbjct: 123 QFGGKRPFGVSLLYIGWDKHYGFQLYQSDPNGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTM 201
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA4_SCHPO (Probable proteasome subunit alpha type-4 OS=Schizosaccharomyces pombe GN=SPAC13C5.01c PE=2 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.084e-60 Identity = 78/118 (66.10%), Postives = 94/118 (79.66%), Query Frame = 1 Query: 4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 YDSRTTIFSPEGRLYQVEYA+EAI +AG A+GI++KDG+VL EKKVTSKLL+ S EK+Y I D++ CAVAG+ +DANILIN AR Q+Y + E MP EQLV+ +CD KQGYT Sbjct: 5 YDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYT 122 HSP 2 Score: 95.1301 bits (235), Expect = 1.084e-60 Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = 2 Query: 359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592 Q+GGLRPFGVSFL+AGWD G+QL+ S+PSGNYG W+ S+++Q+YKDDI+ +EA +A+K LSKT+ Sbjct: 123 QYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYKDDINLDEASAMAVKFLSKTL 200
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA4_CAEEL (Proteasome subunit alpha type-4 OS=Caenorhabditis elegans GN=pas-3 PE=2 SV=2) HSP 1 Score: 153.68 bits (387), Expect = 4.843e-58 Identity = 76/126 (60.32%), Postives = 94/126 (74.60%), Query Frame = 1 Query: 1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPP 378 RYDSRTTIFSPEGRLYQVEYAMEAI +AG+ +GILS +G+V+ E+K KLL S TEK+Y++ D+++C VAGI +DANILIN R A Y +Y E MPVEQLVQ+LC+ KQ YT + P Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRP 129 HSP 2 Score: 92.4337 bits (228), Expect = 4.843e-58 Identity = 45/78 (57.69%), Postives = 54/78 (69.23%), Query Frame = 2 Query: 359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592 Q GG RPFGVS L+ GWDK+YG+QLY SDPSGNY GWK ++LKQ+YK + EEA QLA+KVL KT+ Sbjct: 123 QIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEYKSP-NLEEAKQLAIKVLWKTL 199
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA4_DROME (Proteasome subunit alpha type-4 OS=Drosophila melanogaster GN=Pros29 PE=1 SV=2) HSP 1 Score: 151.754 bits (382), Expect = 9.740e-56 Identity = 71/119 (59.66%), Postives = 96/119 (80.67%), Query Frame = 1 Query: 1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 RYDSRTTIFSPEGRLYQVEYAMEAI +AG+ +GIL++DG++L E + T+KLL ++ +EK+Y+++D++ C+VAGI SDAN+L + R+ AQRY ++Y E +P EQLV LCD KQ YT Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAEDGILLAAECRSTNKLLDSAIPSEKIYRLNDNMVCSVAGITSDANVLTSELRLIAQRYQFSYGEVIPCEQLVSHLCDIKQAYT 122 HSP 2 Score: 86.6557 bits (213), Expect = 9.740e-56 Identity = 42/82 (51.22%), Postives = 52/82 (63.41%), Query Frame = 2 Query: 359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD----DISREEAVQLALKVLSKTM 592 Q+GG RPFGVS L+ GWD YG+QLY SDPSGNYGGWK S+LKQ+ D ++ +A LA+KVLS T+ Sbjct: 123 QYGGKRPFGVSLLYMGWDNKYGYQLYQSDPSGNYGGWKATCIGNNFGAAISMLKQELADKENVKLTLADAKDLAIKVLSMTL 204
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_METJA (Proteasome subunit alpha OS=Methanocaldococcus jannaschii GN=psmA PE=1 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 1.503e-40 Identity = 62/118 (52.54%), Postives = 86/118 (72.88%), Query Frame = 1 Query: 4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 YD T+FSPEGRLYQVEYA EA+ +AIGI KDGVVL ++++TSKL++ S EK+++IDDHVA A +G+++DA +LI+ AR++AQ Y Y E + +E L + +CD KQ YT Sbjct: 9 YDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIR-SIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYT 125 HSP 2 Score: 59.3066 bits (142), Expect = 1.503e-40 Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = 2 Query: 359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSK 586 Q GG+RPFGVS L AG DKN +L+ +DPSG +K +L+++Y+DDI+ +E ++LA+ L+K Sbjct: 126 QHGGVRPFGVSLLIAGIDKNEA-RLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTK 200
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_PYRFU (Proteasome subunit alpha OS=Pyrococcus furiosus GN=psmA PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.503e-40 Identity = 57/118 (48.31%), Postives = 85/118 (72.03%), Query Frame = 1 Query: 4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 YD T+FSP+GRL+QV YA EA+ +A+G+ +GVVL EK++TS+L++ S EK+++IDDH+A A +GI++DA +L+N AR++AQ Y Y EP PV +V+ +CD KQ +T Sbjct: 10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCGEGVVLAVEKRITSRLIEPD-SYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIYRLTYGEPAPVSVIVKKICDLKQMHT 126 HSP 2 Score: 64.6994 bits (156), Expect = 1.503e-40 Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 2 Query: 359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592 Q+GG+RPFG + L AG + +LY +DPSG Y WK +I ++ Y+DD++ E+A++LAL L+KTM Sbjct: 127 QYGGVRPFGAALLMAGINDRP--ELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDDMNLEDAIKLALMALAKTM 202
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 8.608e-38 Identity = 60/118 (50.85%), Postives = 87/118 (73.73%), Query Frame = 1 Query: 4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 YD T+FSP+GRL+QVEYA EA+ +A+GI ++GVVL +K+VTSKL++ S EK+Y+ID H+ A AG+++DA +L+ AR++AQ Y Y Y EP+ V+ LV+++CD KQ YT Sbjct: 10 YDRAITVFSPDGRLFQVEYAREAVKRGTTALGIKVEEGVVLGVDKRVTSKLIEPE-SIEKVYQIDTHIGAATAGLVADARVLVERARIEAQTYRYTYGEPIDVDVLVKAICDLKQVYT 126 HSP 2 Score: 51.6026 bits (122), Expect = 8.608e-38 Identity = 26/78 (33.33%), Postives = 45/78 (57.69%), Query Frame = 2 Query: 347 KVTPQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVL 580 +V Q GG+RPFG + L AG D G +L+ +DPSG K + +++Y++D++ +EA++LA++ L Sbjct: 123 QVYTQHGGVRPFGTALLIAGVDTK-GCRLFETDPSGALTEHKATAIGEGRQEALDVFEEEYREDMTLQEAIELAVRAL 199 The following BLAST results are available for this feature:
BLAST of CF417381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 176
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417381 ID=CF417381; Name=CF417381; organism=Citrus sinensis; type=EST; length=681bpback to top |