CF417381

Overview
NameCF417381
Unique NameCF417381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA5_CAEEL (Proteasome subunit alpha type-5 OS=Caenorhabditis elegans GN=pas-5 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.368e-27
Identity = 45/112 (40.18%), Postives = 74/112 (66.07%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCD 339
            YD     FSPEGRL+QVEYA+EA+    ++IGI + +GV+L  EK+ TSKL+  + + EK+ K+D H+    AG+++D+  L+  A+++AQ + + Y   + VE + QS+ +
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLM-VNDAIEKISKVDQHIGVTFAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVAN 118          

HSP 2 Score: 46.595 bits (109), Expect = 2.368e-27
Identity = 26/73 (35.62%), Postives = 40/73 (54.79%), Query Frame = 2
Query:  374 RPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592
            RPFGV+ LFAG D+  G +L+  DPSG +   K              LK+ Y D ++ +E +++AL +L + M
Sbjct:  134 RPFGVAMLFAGVDQE-GAKLFHLDPSGTFIDCKAKSIGAASDGAEQNLKEQYHDALTIKEGLKMALAILKQVM 205          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA2B_ARATH (Proteasome subunit alpha type-2-B OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.372e-27
Identity = 41/119 (34.45%), Postives = 72/119 (60.50%), Query Frame = 1
Query:    1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            +Y    T FSP G+L Q+E+A+ A+G+  +++GI + +GVV+  EKK+ S +L    S +K+  +  ++    +G+  D  +L+  +R QA++Y   Y+EP+PV QLV+      Q +T
Sbjct:    5 QYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPS-ILVDEASVQKIQHLTPNIGTVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFT 122          

HSP 2 Score: 58.9214 bits (141), Expect = 2.372e-27
Identity = 30/76 (39.47%), Postives = 43/76 (56.58%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSK 586
            Q GG+RPFGVS L AG+D   G QLY  DPSG+Y  WK            + L++ Y +D+  ++A+  A+  L +
Sbjct:  123 QSGGVRPFGVSLLVAGYDDK-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKE 197          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA2A_ARATH (Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana GN=PAB1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.372e-27
Identity = 41/119 (34.45%), Postives = 72/119 (60.50%), Query Frame = 1
Query:    1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            +Y    T FSP G+L Q+E+A+ A+G+  +++GI + +GVV+  EKK+ S +L    S +K+  +  ++    +G+  D  +L+  +R QA++Y   Y+EP+PV QLV+      Q +T
Sbjct:    5 QYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPS-ILVDEASVQKIQHLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFT 122          

HSP 2 Score: 58.9214 bits (141), Expect = 2.372e-27
Identity = 30/76 (39.47%), Postives = 43/76 (56.58%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSK 586
            Q GG+RPFGVS L AG+D   G QLY  DPSG+Y  WK            + L++ Y +D+  ++A+  A+  L +
Sbjct:  123 QSGGVRPFGVSLLVAGYDDK-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKE 197          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_PYRHO (Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.745e-27
Identity = 61/146 (41.78%), Postives = 94/146 (64.38%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPPLWCFISFCRVGQKLWLPTLHE 441
            YD   T+FSP+GRL+QV YA EA+    +A+G+   +GVVL  EK++TS+L++   S EK+++IDDH+A A +GI++DA +L+N AR++AQ +   Y EP P+  +V+ +CD KQ +T      P    +    V +K   P L+E
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCNEGVVLAVEKRITSRLIEPE-SYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVNEK---PELYE 151          

HSP 2 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592
            Q+GG+RPFG + L AG ++    +LY +DPSG Y  WK            +I ++ YKDD+S EEA++LA+  L+KTM
Sbjct:  127 QYGGVRPFGAALLMAGVNEKP--ELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYKDDMSLEEAIKLAIFALAKTM 202          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA7A_XENLA (Proteasome subunit alpha type-7-A OS=Xenopus laevis GN=psma7-A PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.083e-27
Identity = 49/118 (41.53%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   T+FSP+G L+QVEYA EA+    +A+G+  K+ VVL  EKK  +KL Q   +  K+  +D++V  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YT
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKEIVVLGVEKKSVAKL-QDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYT 119          

HSP 2 Score: 46.9802 bits (110), Expect = 3.083e-27
Identity = 25/76 (32.89%), Postives = 37/76 (48.68%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREE--AVQLALKVL 580
            Q  G RPFG+S L  G+D +   +LY +DPSG Y  WK              L++ Y D+    +   ++L +K L
Sbjct:  120 QSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKHYTDEAIETDDLTIKLVIKAL 195          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA7B_XENLA (Proteasome subunit alpha type-7-B OS=Xenopus laevis GN=psma7-B PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.084e-27
Identity = 49/118 (41.53%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   T+FSP+G L+QVEYA EA+    +A+G+  K+ VVL  EKK  +KL Q   +  K+  +D++V  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YT
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKEIVVLGVEKKSVAKL-QDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYT 119          

HSP 2 Score: 46.9802 bits (110), Expect = 3.084e-27
Identity = 25/76 (32.89%), Postives = 37/76 (48.68%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREE--AVQLALKVL 580
            Q  G RPFG+S L  G+D +   +LY +DPSG Y  WK              L++ Y D+    +   ++L +K L
Sbjct:  120 QSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKHYTDEAIETDDLTIKLVIKAL 195          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA7_CHICK (Proteasome subunit alpha type-7 OS=Gallus gallus GN=PSMA7 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.014e-27
Identity = 53/125 (42.40%), Postives = 76/125 (60.80%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPP 378
            YD   T+FSP+G L+QVEYA EA+    +A+G+  KD VVL  EKK  +KL Q   +  K+  +DD+V  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YT   R  P
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKL-QDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSKRRRP 126          

HSP 2 Score: 41.5874 bits (96), Expect = 4.014e-27
Identity = 22/71 (30.99%), Postives = 35/71 (49.30%), Query Frame = 2
Query:  374 RPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREE--AVQLALKVL 580
            RPFG+S L  G+D +   +LY +DPSG Y  WK               +++Y D+    +   ++L +K L
Sbjct:  125 RPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVRVEFEKNYTDEAIETDDLTIKLVIKAL 195          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA5_ENTHI (Proteasome subunit alpha type-5 OS=Entamoeba histolytica PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 4.015e-27
Identity = 52/111 (46.85%), Postives = 76/111 (68.47%), Query Frame = 1
Query:    7 DSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCD 339
            D     FS EGRL+QVEYA EA+    + IGI +K+GVVL  EK+++S L+  S S EK+ +IDDH+  AV+G+ +DA  LI+ AR++AQ + + Y EP+ VE + Q++ D
Sbjct:    9 DHGVNTFSSEGRLFQVEYATEAMKLGSTVIGIQTKEGVVLAVEKRISSPLMLGS-SIEKIIEIDDHIGAAVSGLTADARTLIDNARLEAQNHRFMYDEPINVEVVAQAISD 118          

HSP 2 Score: 41.2022 bits (95), Expect = 4.015e-27
Identity = 26/73 (35.62%), Postives = 37/73 (50.68%), Query Frame = 2
Query:  374 RPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592
            RPFGV+ L AG D+  G +L+ +DPSG +  +             SIL + Y   ++  EA  LAL  L + M
Sbjct:  135 RPFGVALLIAGVDET-GPRLFQTDPSGMFIEFYAKATGAGTEAAQSILHEKYNKSMTLREAEILALSTLKQVM 206          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA7_SCHPO (Probable proteasome subunit alpha type-7 OS=Schizosaccharomyces pombe GN=SPBC106.16 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.221e-27
Identity = 45/118 (38.14%), Postives = 72/118 (61.02%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   ++FSP+GRL QVEY  EA+    +AI +   + +V+  E+K   KL Q  ++ +K+  +D+HV  A AG+ +DA ILI+ ARV+AQ +     +P+ +E L + +   +Q YT
Sbjct:    4 YDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKL-QNVSNFQKIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYT 120          

HSP 2 Score: 55.8398 bits (133), Expect = 5.221e-27
Identity = 30/82 (36.59%), Postives = 47/82 (57.32%), Query Frame = 2
Query:  338 IQSKVTPQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVL 580
            +Q K T Q GG+RPFGVS L AG+D      ++Y ++P+G Y  WK              L++++K+ +SR+E + LA+  L
Sbjct:  115 VQQKYT-QSGGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEKNWKEGLSRDETIHLAVSSL 195          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA7_YEAST (Proteasome component PRE6 OS=Saccharomyces cerevisiae GN=PRE6 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.798e-27
Identity = 48/118 (40.68%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   +IFSP+G ++QVEYA+EA+     A+G+  K+ VVL  E++ T KL  T  +  K+ KID HV  + +G+ +D+ ILI  ARV+AQ +    ++P+ VE L + +   +Q YT
Sbjct:    4 YDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYT 121          

HSP 2 Score: 45.4394 bits (106), Expect = 6.798e-27
Identity = 29/85 (34.12%), Postives = 46/85 (54.12%), Query Frame = 2
Query:  338 IQSKVTPQFGGLRPFGVSFLFAGWD-KNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDY---KDDISREEAVQLALKVL 580
            +Q + T Q GG+RPFGVS L AG+D ++   +LY ++PSG Y  W               L+++Y   +   + EE V+L ++ L
Sbjct:  116 VQQRYT-QSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSL 199          
The following BLAST results are available for this feature:
BLAST of CF417381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA5_CAEEL2.368e-2740.18Proteasome subunit alpha type-5 OS=Caenorhabditis ... [more]
PSA2B_ARATH2.372e-2734.45Proteasome subunit alpha type-2-B OS=Arabidopsis t... [more]
PSA2A_ARATH2.372e-2734.45Proteasome subunit alpha type-2-A OS=Arabidopsis t... [more]
PSMA_PYRHO2.745e-2741.78Proteasome subunit alpha OS=Pyrococcus horikoshii ... [more]
PSA7A_XENLA3.083e-2741.53Proteasome subunit alpha type-7-A OS=Xenopus laevi... [more]
PSA7B_XENLA3.084e-2741.53Proteasome subunit alpha type-7-B OS=Xenopus laevi... [more]
PSA7_CHICK4.014e-2742.40Proteasome subunit alpha type-7 OS=Gallus gallus G... [more]
PSA5_ENTHI4.015e-2746.85Proteasome subunit alpha type-5 OS=Entamoeba histo... [more]
PSA7_SCHPO5.221e-2738.14Probable proteasome subunit alpha type-7 OS=Schizo... [more]
PSA7_YEAST6.798e-2740.68Proteasome component PRE6 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-311 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417381 ID=CF417381; Name=CF417381; organism=Citrus sinensis; type=EST; length=681bp
AGATATGATAGCCGTACCACAATTTTCTCCCCTGAAGGCCGTCTCTATCA
AGTTGAGTATGCAATGGAGGCCATTGGAAATGCTGGTAGTGCAATTGGAA
TATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAAAAGAAGGTTACTTCG
AAGCTCCTGCAAACCTCAACTTCCACTGAGAAGATGTACAAGATTGATGA
TCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTGATGCCAACATCCTAA
TCAACACTGCCAGGGTCCAAGCCCAACGTTACACATATGCCTACCAAGAG
CCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTGTGATACAAAGCAAGG
TTACACCCCAGTTTGGCGGTCTCCGCCCCTTTGGTGTTTCATTTCTTTTT
GCAGGGTGGGACAAAAATTATGGCTTCCAACTTTACATGAGTGATCCTAG
TGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGGTGCAAATAACCAGG
CTGCACAATCAATCCTCAAACAAGATTACAAGGATGATATTTCAAGGGAA
GAAGCAGTTCAACTAGCACTGAAGGTGCTCAGCAAAACCATGGGACAGCA
CCAGTCTTACTTCTGATAAGCTTGATTTAGCTGAGGNTTTCCTGATGCCT
TCTGGCAAAGTGAAGTACCAAGTTTGCTCAC
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