CF417381
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_METB6 (Proteasome subunit alpha OS=Methanoregula boonei (strain 6A8) GN=psmA PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.789e-32 Identity = 57/118 (48.31%), Postives = 83/118 (70.34%), Query Frame = 1 Query: 4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 YD T+FSP+GRLYQVEYA EA+ +A+GI + DGVVL+ +K+V+SKLL+ S+S EK++KID+H+ A +G++ DA L++ AR++ Q +Y E + VE L + LCD Q T Sbjct: 9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKAHDGVVLIVDKRVSSKLLE-SSSIEKIFKIDEHIGVASSGLVGDARALVDRARIECQINRVSYDERIEVEALAKKLCDHMQTLT 125 HSP 2 Score: 44.2838 bits (103), Expect = 2.789e-32 Identity = 25/81 (30.86%), Postives = 43/81 (53.09%), Query Frame = 2 Query: 359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVL-SKTMGQ 598 Q+GG+RP+G + L AG +L+ +DPSG +K + +++Y D++ ++A+ L LK L S T G+ Sbjct: 126 QYGGIRPYGTALLIAGVSDGES-RLFETDPSGTLLEYKATGIGIGRPAAMKVFEEEYTADLALKDAILLGLKALHSATEGK 205
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_SULTO (Proteasome subunit alpha OS=Sulfolobus tokodaii GN=psmA PE=3 SV=2) HSP 1 Score: 111.694 bits (278), Expect = 3.631e-32 Identity = 55/118 (46.61%), Postives = 79/118 (66.95%), Query Frame = 1 Query: 4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 YD TIFSP+G LYQV+YA EA+ + +G+ +K GVVL+GEK+ ++LL S EK++ +DDHV C+ AG+ SD ILI+ AR QA ++ Y EP+ ++ L + + D KQ YT Sbjct: 10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTTLGVKTKAGVVLIGEKRKATQLLDVD-SIEKVFILDDHVGCSFAGLASDGRILIDYARSQALQHRLIYDEPINIDYLTKLVSDVKQMYT 126 HSP 2 Score: 47.7506 bits (112), Expect = 3.631e-32 Identity = 20/78 (25.64%), Postives = 43/78 (55.13%), Query Frame = 2 Query: 359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592 Q GG+RPFGV+ + G D+ +L M++PSG + + +++Y++D++ ++ + L ++ L+ T+ Sbjct: 127 QHGGVRPFGVALIIGGIDRGKTPKLLMTEPSGQFMPYYAVAIGQGGYTATEYFEKNYREDLNMQDTILLGIRALASTL 204
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA7_DICDI (Proteasome subunit alpha type-7 OS=Dictyostelium discoideum GN=psmA7 PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 4.726e-32 Identity = 49/119 (41.18%), Postives = 74/119 (62.18%), Query Frame = 1 Query: 1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 RYD T+FSP+G L+QVEYAMEA+ A+G+ KD +VL EKK T+K LQ + S K+ K+DDH+ AG+ +D+ +LI+ A ++ Q Y ++ VE + + + +Q YT Sbjct: 5 RYDRAITVFSPDGHLFQVEYAMEAVRKGTVAVGVRGKDVIVLGVEKKATAK-LQDARSIRKIVKLDDHICLTFAGLTADSRVLISKALMECQSYRLTVEDSPSVEYISKFIAGIQQRYT 122 HSP 2 Score: 61.2326 bits (147), Expect = 4.726e-32 Identity = 32/81 (39.51%), Postives = 48/81 (59.26%), Query Frame = 2 Query: 338 IQSKVTPQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVL 580 IQ + T Q GG+RPFG+S L G+D + LY +DPSG+Y WK L+++Y D+S EE+++LA++ L Sbjct: 117 IQQRYT-QSGGVRPFGISTLIVGFDTDGTPNLYQTDPSGSYSSWKAAAIGRSSKSVGEFLEKNY-TDVSEEESIKLAVRAL 195
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA7A_ARATH (Proteasome subunit alpha type-7-A OS=Arabidopsis thaliana GN=PAD1 PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 6.155e-32 Identity = 52/119 (43.70%), Postives = 77/119 (64.71%), Query Frame = 1 Query: 1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 RYD T+FSP+G L+QVEYA+EA+ +A+G+ D VVL EKK T K LQ S S K+ +D+H+A A AG+ +DA +LIN AR++ Q + ++P+ VE + + + +Q YT Sbjct: 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPK-LQDSRSARKIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYT 120 HSP 2 Score: 51.6026 bits (122), Expect = 6.155e-32 Identity = 30/82 (36.59%), Postives = 45/82 (54.88%), Query Frame = 2 Query: 338 IQSKVTPQFGGLRPFGVSFLFAGWDKNYGFQ-LYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVL 580 +Q K T Q GG+RPFG+S L G+D LY +DPSG + WK L+++YK+ + +E V+LA++ L Sbjct: 115 LQQKYT-QSGGVRPFGLSTLIVGFDPYTRIPALYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKES-AGQETVKLAIRAL 194
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_METTH (Proteasome subunit alpha OS=Methanobacterium thermoautotrophicum GN=psmA PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 8.015e-32 Identity = 55/118 (46.61%), Postives = 84/118 (71.19%), Query Frame = 1 Query: 4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 YD T+FSP+GRL+QVEYA EA+ +++G+ SK+G+VLV +K+ TSKL++ S EK+++ID+H+ A +G+++DA +I AR++AQ Y EP+ VE L + +CD KQ YT Sbjct: 9 YDRAITVFSPDGRLFQVEYAREAVKRGTTSLGVKSKEGIVLVVDKRPTSKLVEPK-SIEKIFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAKKICDMKQMYT 125 HSP 2 Score: 40.817 bits (94), Expect = 8.015e-32 Identity = 22/71 (30.99%), Postives = 37/71 (52.11%), Query Frame = 2 Query: 359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLAL 571 Q GG+RPFG + + G + G +L+ +DPSG +K ++ Y DD++ +A++LAL Sbjct: 126 QHGGVRPFGTALIIGGVN-GRGCRLFETDPSGALIEYKATAIGAGRPAAMEEFEKKYSDDMNLNQAIELAL 195
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSJ (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. japonica GN=Os08g0548900 PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 1.770e-31 Identity = 53/119 (44.54%), Postives = 76/119 (63.87%), Query Frame = 1 Query: 1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 RYD T+FSP+G L+QVEYA+EA+ +A+G+ D VVL EKK T KL Q S S K+ +D H+A A AG+ +DA +LIN ARV+ Q + ++P+ VE + + + +Q YT Sbjct: 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKL-QDSRSMRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYT 120 HSP 2 Score: 52.373 bits (124), Expect = 1.770e-31 Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 2 Query: 338 IQSKVTPQFGGLRPFGVSFLFAGWDK-NYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVL 580 +Q K T Q GG+RPFG+S L G+D LY +DPSG + WK L+++YK D S +E ++LA++ L Sbjct: 115 LQQKYT-QSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-DTSGKETIKLAIRAL 194
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSI (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. indica GN=OsI_029135 PE=2 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 1.770e-31 Identity = 53/119 (44.54%), Postives = 76/119 (63.87%), Query Frame = 1 Query: 1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 RYD T+FSP+G L+QVEYA+EA+ +A+G+ D VVL EKK T KL Q S S K+ +D H+A A AG+ +DA +LIN ARV+ Q + ++P+ VE + + + +Q YT Sbjct: 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKL-QDSRSMRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYT 120 HSP 2 Score: 52.373 bits (124), Expect = 1.770e-31 Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 2 Query: 338 IQSKVTPQFGGLRPFGVSFLFAGWDK-NYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVL 580 +Q K T Q GG+RPFG+S L G+D LY +DPSG + WK L+++YK D S +E ++LA++ L Sbjct: 115 LQQKYT-QSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-DTSGKETIKLAIRAL 194
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA1_HALVO (Proteasome subunit alpha 1 OS=Halobacterium volcanii GN=psmA1 PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 2.305e-31 Identity = 57/125 (45.60%), Postives = 80/125 (64.00%), Query Frame = 1 Query: 4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPP 378 YD TIFSP+GRLYQVEYA EA+ ++IG+ + +GVVL +K+ S L++ TS EK++K DDH+ A AG ++DA LI+ AR Q+Q Y EP+ +E L + + D Q YT V + P Sbjct: 10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLAADKRSRSPLME-PTSVEKIHKADDHIGIASAGHVADARQLIDFARHQSQVNRLRYGEPIGIETLTKEVTDHIQQYTQVGGARP 133 HSP 2 Score: 52.373 bits (124), Expect = 2.305e-31 Identity = 27/77 (35.06%), Postives = 44/77 (57.14%), Query Frame = 2 Query: 359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKT 589 Q GG RPFGV+ L G + N +LY +DPSG WK L+++++DD++ +E ++LAL+ ++ T Sbjct: 127 QVGGARPFGVALLIGGVE-NGTPRLYETDPSGTPYEWKAVSIGADRGDHQEHLEENFRDDLTLDEGIELALEAIAST 202
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_METMJ (Proteasome subunit alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=psmA PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 3.004e-31 Identity = 58/118 (49.15%), Postives = 82/118 (69.49%), Query Frame = 1 Query: 4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357 YD T+FSP+GRLYQVEYA EA+ +A+GI +GVVL+ +K+VTS+LL+ S EK++KID H+ A +G++ DA L++ ARV++Q +Y EP+ VE L + LCD Q YT Sbjct: 9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKCSEGVVLIVDKRVTSRLLE-PVSIEKIFKIDAHIGVASSGLVGDARSLVDRARVESQINRVSYNEPINVEILAKKLCDHMQTYT 125 HSP 2 Score: 40.4318 bits (93), Expect = 3.004e-31 Identity = 22/74 (29.73%), Postives = 35/74 (47.30%), Query Frame = 2 Query: 359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVL 580 QFGG RP+G + L AG +L+ +DPSG +K + +Y++D A++L +K L Sbjct: 126 QFGGARPYGTALLIAGVSDGEA-RLFETDPSGTLLEYKATGIGTGRPAVIKTFEDEYQEDADFSGAIRLGIKAL 198
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_HALSA (Proteasome subunit alpha OS=Halobacterium salinarium GN=psmA PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 5.089e-31 Identity = 61/125 (48.80%), Postives = 82/125 (65.60%), Query Frame = 1 Query: 4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPP 378 YD TIFSP+GRLYQVEYA EA+ ++IG+ + +GVVLV +K+ S LL+ S S EK++KIDDHV A AG ++DA L++ AR Q+Q Y EP+ V L +S+ D Q YT V + P Sbjct: 10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLVVDKQTRSPLLEGS-SVEKLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQYTQVGGARP 133 HSP 2 Score: 46.595 bits (109), Expect = 5.089e-31 Identity = 25/76 (32.89%), Postives = 39/76 (51.32%), Query Frame = 2 Query: 359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSK 586 Q GG RPFGV+ L AG + +L+ +DPSG WK L+ +Y +S ++ + LAL+ L++ Sbjct: 127 QVGGARPFGVALLIAGVEGGEP-RLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYDAGLSVDDGIDLALRALNE 201 The following BLAST results are available for this feature:
BLAST of CF417381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 176
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417381 ID=CF417381; Name=CF417381; organism=Citrus sinensis; type=EST; length=681bpback to top |