CF417381

Overview
NameCF417381
Unique NameCF417381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_METB6 (Proteasome subunit alpha OS=Methanoregula boonei (strain 6A8) GN=psmA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.789e-32
Identity = 57/118 (48.31%), Postives = 83/118 (70.34%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   T+FSP+GRLYQVEYA EA+    +A+GI + DGVVL+ +K+V+SKLL+ S+S EK++KID+H+  A +G++ DA  L++ AR++ Q    +Y E + VE L + LCD  Q  T
Sbjct:    9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKAHDGVVLIVDKRVSSKLLE-SSSIEKIFKIDEHIGVASSGLVGDARALVDRARIECQINRVSYDERIEVEALAKKLCDHMQTLT 125          

HSP 2 Score: 44.2838 bits (103), Expect = 2.789e-32
Identity = 25/81 (30.86%), Postives = 43/81 (53.09%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVL-SKTMGQ 598
            Q+GG+RP+G + L AG       +L+ +DPSG    +K             + +++Y  D++ ++A+ L LK L S T G+
Sbjct:  126 QYGGIRPYGTALLIAGVSDGES-RLFETDPSGTLLEYKATGIGIGRPAAMKVFEEEYTADLALKDAILLGLKALHSATEGK 205          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_SULTO (Proteasome subunit alpha OS=Sulfolobus tokodaii GN=psmA PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.631e-32
Identity = 55/118 (46.61%), Postives = 79/118 (66.95%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   TIFSP+G LYQV+YA EA+    + +G+ +K GVVL+GEK+  ++LL    S EK++ +DDHV C+ AG+ SD  ILI+ AR QA ++   Y EP+ ++ L + + D KQ YT
Sbjct:   10 YDRAITIFSPDGSLYQVDYAFEAVKKGWTTLGVKTKAGVVLIGEKRKATQLLDVD-SIEKVFILDDHVGCSFAGLASDGRILIDYARSQALQHRLIYDEPINIDYLTKLVSDVKQMYT 126          

HSP 2 Score: 47.7506 bits (112), Expect = 3.631e-32
Identity = 20/78 (25.64%), Postives = 43/78 (55.13%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 592
            Q GG+RPFGV+ +  G D+    +L M++PSG +  +                +++Y++D++ ++ + L ++ L+ T+
Sbjct:  127 QHGGVRPFGVALIIGGIDRGKTPKLLMTEPSGQFMPYYAVAIGQGGYTATEYFEKNYREDLNMQDTILLGIRALASTL 204          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA7_DICDI (Proteasome subunit alpha type-7 OS=Dictyostelium discoideum GN=psmA7 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.726e-32
Identity = 49/119 (41.18%), Postives = 74/119 (62.18%), Query Frame = 1
Query:    1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            RYD   T+FSP+G L+QVEYAMEA+     A+G+  KD +VL  EKK T+K LQ + S  K+ K+DDH+    AG+ +D+ +LI+ A ++ Q Y    ++   VE + + +   +Q YT
Sbjct:    5 RYDRAITVFSPDGHLFQVEYAMEAVRKGTVAVGVRGKDVIVLGVEKKATAK-LQDARSIRKIVKLDDHICLTFAGLTADSRVLISKALMECQSYRLTVEDSPSVEYISKFIAGIQQRYT 122          

HSP 2 Score: 61.2326 bits (147), Expect = 4.726e-32
Identity = 32/81 (39.51%), Postives = 48/81 (59.26%), Query Frame = 2
Query:  338 IQSKVTPQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVL 580
            IQ + T Q GG+RPFG+S L  G+D +    LY +DPSG+Y  WK              L+++Y  D+S EE+++LA++ L
Sbjct:  117 IQQRYT-QSGGVRPFGISTLIVGFDTDGTPNLYQTDPSGSYSSWKAAAIGRSSKSVGEFLEKNY-TDVSEEESIKLAVRAL 195          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA7A_ARATH (Proteasome subunit alpha type-7-A OS=Arabidopsis thaliana GN=PAD1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.155e-32
Identity = 52/119 (43.70%), Postives = 77/119 (64.71%), Query Frame = 1
Query:    1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            RYD   T+FSP+G L+QVEYA+EA+    +A+G+   D VVL  EKK T K LQ S S  K+  +D+H+A A AG+ +DA +LIN AR++ Q +    ++P+ VE + + +   +Q YT
Sbjct:    3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPK-LQDSRSARKIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYT 120          

HSP 2 Score: 51.6026 bits (122), Expect = 6.155e-32
Identity = 30/82 (36.59%), Postives = 45/82 (54.88%), Query Frame = 2
Query:  338 IQSKVTPQFGGLRPFGVSFLFAGWDKNYGFQ-LYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVL 580
            +Q K T Q GG+RPFG+S L  G+D       LY +DPSG +  WK              L+++YK+  + +E V+LA++ L
Sbjct:  115 LQQKYT-QSGGVRPFGLSTLIVGFDPYTRIPALYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKES-AGQETVKLAIRAL 194          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_METTH (Proteasome subunit alpha OS=Methanobacterium thermoautotrophicum GN=psmA PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.015e-32
Identity = 55/118 (46.61%), Postives = 84/118 (71.19%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   T+FSP+GRL+QVEYA EA+    +++G+ SK+G+VLV +K+ TSKL++   S EK+++ID+H+  A +G+++DA  +I  AR++AQ     Y EP+ VE L + +CD KQ YT
Sbjct:    9 YDRAITVFSPDGRLFQVEYAREAVKRGTTSLGVKSKEGIVLVVDKRPTSKLVEPK-SIEKIFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAKKICDMKQMYT 125          

HSP 2 Score: 40.817 bits (94), Expect = 8.015e-32
Identity = 22/71 (30.99%), Postives = 37/71 (52.11%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLAL 571
            Q GG+RPFG + +  G +   G +L+ +DPSG    +K               ++ Y DD++  +A++LAL
Sbjct:  126 QHGGVRPFGTALIIGGVN-GRGCRLFETDPSGALIEYKATAIGAGRPAAMEEFEKKYSDDMNLNQAIELAL 195          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSJ (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. japonica GN=Os08g0548900 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.770e-31
Identity = 53/119 (44.54%), Postives = 76/119 (63.87%), Query Frame = 1
Query:    1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            RYD   T+FSP+G L+QVEYA+EA+    +A+G+   D VVL  EKK T KL Q S S  K+  +D H+A A AG+ +DA +LIN ARV+ Q +    ++P+ VE + + +   +Q YT
Sbjct:    3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKL-QDSRSMRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYT 120          

HSP 2 Score: 52.373 bits (124), Expect = 1.770e-31
Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 2
Query:  338 IQSKVTPQFGGLRPFGVSFLFAGWDK-NYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVL 580
            +Q K T Q GG+RPFG+S L  G+D       LY +DPSG +  WK              L+++YK D S +E ++LA++ L
Sbjct:  115 LQQKYT-QSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-DTSGKETIKLAIRAL 194          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSI (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. indica GN=OsI_029135 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 1.770e-31
Identity = 53/119 (44.54%), Postives = 76/119 (63.87%), Query Frame = 1
Query:    1 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            RYD   T+FSP+G L+QVEYA+EA+    +A+G+   D VVL  EKK T KL Q S S  K+  +D H+A A AG+ +DA +LIN ARV+ Q +    ++P+ VE + + +   +Q YT
Sbjct:    3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKL-QDSRSMRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYT 120          

HSP 2 Score: 52.373 bits (124), Expect = 1.770e-31
Identity = 31/82 (37.80%), Postives = 45/82 (54.88%), Query Frame = 2
Query:  338 IQSKVTPQFGGLRPFGVSFLFAGWDK-NYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVL 580
            +Q K T Q GG+RPFG+S L  G+D       LY +DPSG +  WK              L+++YK D S +E ++LA++ L
Sbjct:  115 LQQKYT-QSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK-DTSGKETIKLAIRAL 194          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA1_HALVO (Proteasome subunit alpha 1 OS=Halobacterium volcanii GN=psmA1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.305e-31
Identity = 57/125 (45.60%), Postives = 80/125 (64.00%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPP 378
            YD   TIFSP+GRLYQVEYA EA+    ++IG+ + +GVVL  +K+  S L++  TS EK++K DDH+  A AG ++DA  LI+ AR Q+Q     Y EP+ +E L + + D  Q YT V  + P
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLAADKRSRSPLME-PTSVEKIHKADDHIGIASAGHVADARQLIDFARHQSQVNRLRYGEPIGIETLTKEVTDHIQQYTQVGGARP 133          

HSP 2 Score: 52.373 bits (124), Expect = 2.305e-31
Identity = 27/77 (35.06%), Postives = 44/77 (57.14%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKT 589
            Q GG RPFGV+ L  G + N   +LY +DPSG    WK              L+++++DD++ +E ++LAL+ ++ T
Sbjct:  127 QVGGARPFGVALLIGGVE-NGTPRLYETDPSGTPYEWKAVSIGADRGDHQEHLEENFRDDLTLDEGIELALEAIAST 202          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_METMJ (Proteasome subunit alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=psmA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.004e-31
Identity = 58/118 (49.15%), Postives = 82/118 (69.49%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYT 357
            YD   T+FSP+GRLYQVEYA EA+    +A+GI   +GVVL+ +K+VTS+LL+   S EK++KID H+  A +G++ DA  L++ ARV++Q    +Y EP+ VE L + LCD  Q YT
Sbjct:    9 YDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKCSEGVVLIVDKRVTSRLLE-PVSIEKIFKIDAHIGVASSGLVGDARSLVDRARVESQINRVSYNEPINVEILAKKLCDHMQTYT 125          

HSP 2 Score: 40.4318 bits (93), Expect = 3.004e-31
Identity = 22/74 (29.73%), Postives = 35/74 (47.30%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVL 580
            QFGG RP+G + L AG       +L+ +DPSG    +K               + +Y++D     A++L +K L
Sbjct:  126 QFGGARPYGTALLIAGVSDGEA-RLFETDPSGTLLEYKATGIGTGRPAVIKTFEDEYQEDADFSGAIRLGIKAL 198          
BLAST of CF417381 vs. ExPASy Swiss-Prot
Match: PSMA_HALSA (Proteasome subunit alpha OS=Halobacterium salinarium GN=psmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 5.089e-31
Identity = 61/125 (48.80%), Postives = 82/125 (65.60%), Query Frame = 1
Query:    4 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTPVWRSPP 378
            YD   TIFSP+GRLYQVEYA EA+    ++IG+ + +GVVLV +K+  S LL+ S S EK++KIDDHV  A AG ++DA  L++ AR Q+Q     Y EP+ V  L +S+ D  Q YT V  + P
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTPEGVVLVVDKQTRSPLLEGS-SVEKLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQYTQVGGARP 133          

HSP 2 Score: 46.595 bits (109), Expect = 5.089e-31
Identity = 25/76 (32.89%), Postives = 39/76 (51.32%), Query Frame = 2
Query:  359 QFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSK 586
            Q GG RPFGV+ L AG +     +L+ +DPSG    WK              L+ +Y   +S ++ + LAL+ L++
Sbjct:  127 QVGGARPFGVALLIAGVEGGEP-RLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYDAGLSVDDGIDLALRALNE 201          
The following BLAST results are available for this feature:
BLAST of CF417381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSMA_METB62.789e-3248.31Proteasome subunit alpha OS=Methanoregula boonei (... [more]
PSMA_SULTO3.631e-3246.61Proteasome subunit alpha OS=Sulfolobus tokodaii GN... [more]
PSA7_DICDI4.726e-3241.18Proteasome subunit alpha type-7 OS=Dictyostelium d... [more]
PSA7A_ARATH6.155e-3243.70Proteasome subunit alpha type-7-A OS=Arabidopsis t... [more]
PSMA_METTH8.015e-3246.61Proteasome subunit alpha OS=Methanobacterium therm... [more]
PSA7A_ORYSJ1.770e-3144.54Proteasome subunit alpha type-7-A OS=Oryza sativa ... [more]
PSA7A_ORYSI1.770e-3144.54Proteasome subunit alpha type-7-A OS=Oryza sativa ... [more]
PSMA1_HALVO2.305e-3145.60Proteasome subunit alpha 1 OS=Halobacterium volcan... [more]
PSMA_METMJ3.004e-3149.15Proteasome subunit alpha OS=Methanoculleus marisni... [more]
PSMA_HALSA5.089e-3148.80Proteasome subunit alpha OS=Halobacterium salinari... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-311 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417381 ID=CF417381; Name=CF417381; organism=Citrus sinensis; type=EST; length=681bp
AGATATGATAGCCGTACCACAATTTTCTCCCCTGAAGGCCGTCTCTATCA
AGTTGAGTATGCAATGGAGGCCATTGGAAATGCTGGTAGTGCAATTGGAA
TATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAAAAGAAGGTTACTTCG
AAGCTCCTGCAAACCTCAACTTCCACTGAGAAGATGTACAAGATTGATGA
TCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTGATGCCAACATCCTAA
TCAACACTGCCAGGGTCCAAGCCCAACGTTACACATATGCCTACCAAGAG
CCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTGTGATACAAAGCAAGG
TTACACCCCAGTTTGGCGGTCTCCGCCCCTTTGGTGTTTCATTTCTTTTT
GCAGGGTGGGACAAAAATTATGGCTTCCAACTTTACATGAGTGATCCTAG
TGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGGTGCAAATAACCAGG
CTGCACAATCAATCCTCAAACAAGATTACAAGGATGATATTTCAAGGGAA
GAAGCAGTTCAACTAGCACTGAAGGTGCTCAGCAAAACCATGGGACAGCA
CCAGTCTTACTTCTGATAAGCTTGATTTAGCTGAGGNTTTCCTGATGCCT
TCTGGCAAAGTGAAGTACCAAGTTTGCTCAC
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