CF417388

Overview
NameCF417388
Unique NameCF417388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3485 contig Csv1_Contig3485:63..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417388 vs. ExPASy Swiss-Prot
Match: NF314_NAEFO (Virulence-related protein Nf314 OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.783e-12
Identity = 48/128 (37.50%), Postives = 67/128 (52.34%), Query Frame = 3
Query:  234 VQKALRVREGTVEY--WTRCNKSLSYTSDVSSGVDYHRKLTKKGYQVLVYSGDVDMVVPYMATEAWIKSLNLTIETGWQPWLVES---QVAGYWYRYKGKNNYHLTFATVKGAGHNGPEYRPKECLAM 602
            VQ+AL VR  T +   W  C   ++YT   S+ + ++ KL     ++LVYSGD DMVV  + T+A I  L L   + W+ W  +S    V G + R   K+   LTF TV+GAGH  P  +P     M
Sbjct:  346 VQQALGVRRKTADPNGWNICTGIINYTQVYSTILPFYAKLLPH-IRILVYSGDTDMVVNGLGTQAAIDKLQLQETSSWRTWEFDSALGTVVGGYIRKFEKSGKGLTFITVRGAGHMVPLVKPDSAFYM 472          
BLAST of CF417388 vs. ExPASy Swiss-Prot
Match: CBP22_HORVU (Serine carboxypeptidase II-2 (Fragment) OS=Hordeum vulgare GN=CXP;2-2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.329e-12
Identity = 47/147 (31.97%), Postives = 75/147 (51.02%), Query Frame = 3
Query:  204 YSYNWANNKAVQKALRVREGTVEY-WTRCNKSLS--YTSDVSSGVDYHRKLTKKGYQVLVYSGDVDMVVPYMATEAWIKSLNLTIETGWQPWL-VESQVAGYWYRYKGKNNYHLTFATVKGAGHNGPEYRPKECLAMIDRWXASYPL 632
            +S  + N   VQKAL V     +  W  C++ ++  +     S +  + +L + G ++ ++SGD D V+P  +T   I +L L   T W  W   + +V G+   YKG     L F TV+GAGH  P +RPK+ L +I  + A  P+
Sbjct:  285 HSIVYFNLHEVQKALHVNPVIGKSKWETCSEVINTNWKDCERSVLHIYHELIQYGLRIWMFSGDTDAVIPVTSTRYSIDALKLPTVTPWHAWYDDDGEVGGWTQGYKG-----LNFVTVRGAGHEVPLHRPKQALTLIKSFLAGRPM 426          
BLAST of CF417388 vs. ExPASy Swiss-Prot
Match: SCP45_ARATH (Serine carboxypeptidase-like 45 OS=Arabidopsis thaliana GN=SCPL45 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.776e-12
Identity = 50/146 (34.25%), Postives = 69/146 (47.26%), Query Frame = 3
Query:  213 NWANNKAVQKALRVREGTVEYWTRCNKSLSYTS-DVS-SGVDYHRKLTKKGYQVLVYSGDVDMVVPYMATEAWI----KSLNLTIETGWQPWLVESQVAGYWYRYKGKNNYHLTFATVKGAGHNGPEYRPKECLAMIDRWXASYPL 632
            N+ N + VQ+AL  R   V  WT C+  L Y   DV    ++    L K G  VLVYSGD D V+P   +   +    K L L     ++ W    QV G W +  G     L+FATV+GA H  P  +P+  L +   +   +PL
Sbjct:  316 NYLNRRDVQEALHARLIGVREWTVCSNVLDYQLLDVEIPTINIVGSLVKAGVPVLVYSGDQDSVIPLTGSRTLVSRLAKQLGLRTSVPYRVWFAGQQVGG-WTQVYGN---VLSFATVRGASHEVPFSQPERSLVLFKAFLDGHPL 457          
BLAST of CF417388 vs. ExPASy Swiss-Prot
Match: SCP46_ARATH (Serine carboxypeptidase-like 46 OS=Arabidopsis thaliana GN=SCPL46 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.575e-11
Identity = 49/146 (33.56%), Postives = 64/146 (43.84%), Query Frame = 3
Query:  213 NWANNKAVQKALRVREGTVEYWTRCNKSLSY-TSDVS-SGVDYHRKLTKKGYQVLVYSGDVDMVVPYMATEAWIK----SLNLTIETGWQPWLVESQVAGYWYRYKGKNNYHLTFATVKGAGHNGPEYRPKECLAMIDRWXASYPL 632
            N+ N + VQKAL  R      WT C+  L Y   DV    ++    L K G  V VYSGD D V+P   +   +K     L L     ++ W    QV G W +  G     L FATV+GA H  P  +P   L +   +    PL
Sbjct:  320 NYLNRRDVQKALHARLVGTRKWTVCSDVLDYEVLDVEVPTINIVGSLVKAGVPVFVYSGDQDSVIPLTGSRTLVKRLAEELGLRTTVPYRVWFAGQQVGG-WTQVYGNT---LAFATVRGAAHEVPFSQPARALVLFKAFLGGRPL 461          
The following BLAST results are available for this feature:
BLAST of CF417388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
NF314_NAEFO1.783e-1237.50Virulence-related protein Nf314 OS=Naegleria fowle... [more]
CBP22_HORVU2.329e-1231.97Serine carboxypeptidase II-2 (Fragment) OS=Hordeum... [more]
SCP45_ARATH6.776e-1234.25Serine carboxypeptidase-like 45 OS=Arabidopsis tha... [more]
SCP46_ARATH2.575e-1133.56Serine carboxypeptidase-like 46 OS=Arabidopsis tha... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-318 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_F09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417388 ID=CF417388; Name=CF417388; organism=Citrus sinensis; type=EST; length=658bp
AAGCTGATCTTCAAAATATAACAGCGTGCATTGGAAAATTATCTATCCAG
AACATATATGAACCTCAATGTAGTTTAGATATACTCAGAAGACCAGTGCA
ATTCATATGGGATCGCGCCATCATCGAAGAAGATTCTTTTGATTTTCTCT
ATTCGCCAGTTCAATCAGCTCCAAGCCATTGGTGTCGGAAAGATAACTAT
TTCTACTCGTACAATTGGGCAAATAATAAAGCTGTGCAAAAGGCTCTGAG
AGTTCGGGAGGGGACAGTAGAATATTGGACGAGATGCAATAAAAGTTTGT
CTTACACATCTGATGTCTCAAGTGGTGTTGATTATCACCGAAAGCTCACC
AAGAAAGGCTATCAAGTTTTGGTTTACAGCGGAGATGTCGACATGGTAGT
TCCATATATGGCTACTGAAGCATGGATAAAGTCATTAAATTTGACGATTG
AAACTGGCTGGCAGCCGTGGTTGGTGGAAAGTCAAGTTGCAGGATATTGG
TACCGTTACAAGGGAAAGAACAATTATCATTTGACATTTGCCACAGTAAA
GGGAGCAGGTCATAATGGTCCAGAGTACAGGCCTAAGGAATGTCTTGCAA
TGATCGACAGGTGGNTCGCATCCTATCCTCTCTAGAGCCCCGTTCATATA
ATTATTAA
back to top