CF417392

Overview
NameCF417392
Unique NameCF417392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGAL9_ORYSJ (Beta-galactosidase 9 OS=Oryza sativa subsp. japonica GN=Os06g0573600 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.043e-58
Identity = 108/197 (54.82%), Postives = 140/197 (71.07%), Query Frame = 3
Query:    3 INITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            +++T D SDYLWY T V I S E FL+ GQ P LTV SAGH+V VF+NGQ+ G+A+G  +  + T+SG   +  G NKI++LS AVGLPNVG HYETW  GV G V L GL+ G +DL+ QKW+YQ+GLKGE + + S S ++SV+W      A G+Q + W++AYF+APAG  P+ALDL  MGKGQ W+NG  IGR
Sbjct:  453 LSMTWDKSDYLWYTTYVNIDSGEQFLKSGQWPQLTVYSAGHSVQVFVNGQYFGNAYGGYDGPKLTYSGYVKMWQGSNKISILSSAVGLPNVGTHYETWNIGVLGPVTLSGLNEGKRDLSKQKWTYQIGLKGEKLGVHSVSGSSSVEWG----GAAGKQPVTWHRAYFNAPAGGAPVALDLGSMGKGQAWVNGHLIGR 645          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGAL2_ARATH (Beta-galactosidase 2 OS=Arabidopsis thaliana GN=BGAL2 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.778e-58
Identity = 105/197 (53.30%), Postives = 139/197 (70.56%), Query Frame = 3
Query:    3 INITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            I++TRD +DY WY T + I S ESFL+ G  P LT+ SAGHA+HVF+NG   G+++G   N + TFS    L  GINK+ALLS AVGLPN G+HYETW TG+ G V L G++ G  D++  KWSY++GL+GEAM+L + + +++V W       + +Q L WYK+ FD P GNEPLALD+  MGKGQVW+NG +IGR
Sbjct:  460 ISMTRDKTDYFWYFTDITIGSDESFLKTGDNPLLTIFSAGHALHVFVNGLLAGTSYGALSNSKLTFSQNIKLSVGINKLALLSTAVGLPNAGVHYETWNTGILGPVTLKGVNSGTWDMSKWKWSYKIGLRGEAMSLHTLAGSSAVKWWIKGFVVK-KQPLTWYKSSFDTPRGNEPLALDMNTMGKGQVWVNGHNIGR 655          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGAL_DIACA (Putative beta-galactosidase OS=Dianthus caryophyllus GN=CARSR12 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.839e-56
Identity = 105/197 (53.30%), Postives = 131/197 (66.50%), Query Frame = 3
Query:    3 INITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            IN+T D SDYLWYMT V +  +E FL+ G +P LTV SAGH +HVF+NGQ  G A+G+    + TFS    + AG+N+I+LLS  VGL NVG H+E +  GV G V L GL+ G +DLTWQ WSY++G KGE   + +   ++ V W         +Q L WYK  FDAP GN+PLALDL  MGKGQ WINGQSIGR
Sbjct:  466 INMTWDKSDYLWYMTDVVLDGNEGFLKKGDEPWLTVNSAGHVLHVFVNGQLQGHAYGSLAKPQLTFSQKVKMTAGVNRISLLSAVVGLANVGWHFERYNQGVLGPVTLSGLNEGTRDLTWQYWSYKIGTKGEEQQVYNSGGSSHVQWG----PPAWKQPLVWYKTTFDAPGGNDPLALDLGSMGKGQAWINGQSIGR 658          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGAL4_ORYSJ (Beta-galactosidase 4 OS=Oryza sativa subsp. japonica GN=Os02g0219200 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.319e-53
Identity = 100/197 (50.76%), Postives = 138/197 (70.05%), Query Frame = 3
Query:    3 INITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            +++T D SDYLWY T V I +++  LR GQ P LTV SAGH++ VF+NG+  GS +G  +N + T++G   +  G NKI++LS AVGLPNVG H+E W  GV G V L  L+ G KDL+ QKW+YQVGLKGE + L + + +++V+W        G Q L W+KA+F+APAGN+P+ALD+  MGKGQ+W+NG  +GR
Sbjct:  469 LSMTWDKSDYLWYTTYVNIGTND--LRSGQSPQLTVYSAGHSMQVFVNGKSYGSVYGGYDNPKLTYNGRVKMWQGSNKISILSSAVGLPNVGNHFENWNVGVLGPVTLSSLNGGTKDLSHQKWTYQVGLKGETLGLHTVTGSSAVEWG----GPGGYQPLTWHKAFFNAPAGNDPVALDMGSMGKGQLWVNGHHVGR 659          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGAL4_ORYSI (Beta-galactosidase 4 OS=Oryza sativa subsp. indica GN=OsI_006270 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.319e-53
Identity = 100/197 (50.76%), Postives = 138/197 (70.05%), Query Frame = 3
Query:    3 INITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            +++T D SDYLWY T V I +++  LR GQ P LTV SAGH++ VF+NG+  GS +G  +N + T++G   +  G NKI++LS AVGLPNVG H+E W  GV G V L  L+ G KDL+ QKW+YQVGLKGE + L + + +++V+W        G Q L W+KA+F+APAGN+P+ALD+  MGKGQ+W+NG  +GR
Sbjct:  469 LSMTWDKSDYLWYTTYVNIGTND--LRSGQSPQLTVYSAGHSMQVFVNGKSYGSVYGGYDNPKLTYNGRVKMWQGSNKISILSSAVGLPNVGNHFENWNVGVLGPVTLSSLNGGTKDLSHQKWTYQVGLKGETLGLHTVTGSSAVEWG----GPGGYQPLTWHKAFFNAPAGNDPVALDMGSMGKGQLWVNGHHVGR 659          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGA10_ARATH (Beta-galactosidase 10 OS=Arabidopsis thaliana GN=BGAL10 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.119e-44
Identity = 88/197 (44.67%), Postives = 124/197 (62.94%), Query Frame = 3
Query:    3 INITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            IN T+DT+DYLWY TS+ +S +E+FL+ G  P L +ES GH +HVFIN ++LG+A G   +  F    P  L+AG N I LLS+ VGL N G  YE W      +V + G + G  +LT  KWSY++G++GE + L  P  + +V WT  +   + +Q L WYK   + P+G+EP+ LD+  MGKG  W+NG+ IGR
Sbjct:  468 INTTKDTTDYLWYTTSITVSENEAFLKKGSSPVLFIESKGHTLHVFINKEYLGTATGNGTHVPFKLKKPVALKAGENNIDLLSMTVGLANAGSFYE-WVGAGLTSVSIKGFNKGTLNLTNSKWSYKLGVEGEHLELFKPGNSGAVKWTVTTKPPK-KQPLTWYKVVIEPPSGSEPVGLDMISMGKGMAWLNGEEIGR 662          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGAL6_ORYSJ (Beta-galactosidase 6 OS=Oryza sativa subsp. japonica GN=Os03g0255100 PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.580e-41
Identity = 90/197 (45.69%), Postives = 120/197 (60.91%), Query Frame = 3
Query:    3 INITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            IN T D SD+LWY TS+ +   E +L G Q   L V S GH + ++ING+  GSA G+  +   +   P  L  G NKI LLS  VGL N G  ++    GV G V L G  +G  +L+   W+YQ+GL+GE ++L +PSEA S +W   + A    Q L WYK  F APAG++P+A+D  GMGKG+ W+NGQSIGR
Sbjct:  481 INTTADASDFLWYSTSIVVKGDEPYLNGSQS-NLLVNSLGHVLQIYINGKLAGSAKGSASSSLISLQTPVTLVPGKNKIDLLSTTVGLSNYGAFFDLVGAGVTGPVKLSG-PNGALNLSSTDWTYQIGLRGEDLHLYNPSEA-SPEWVSDN-AYPTNQPLIWYKTKFTAPAGDDPVAIDFTGMGKGEAWVNGQSIGR 673          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGAL8_ARATH (Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BGAL8 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.379e-39
Identity = 89/198 (44.95%), Postives = 112/198 (56.57%), Query Frame = 3
Query:    3 INITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNK-DLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            IN T D SDYLWY    +I   E+FL  G K  L +ES G  V+ FING+  GS  G    ++ +   P NL  G N I LLS+ VGL N G  ++    G+ G V L     G+  DL  Q+W+YQVGLKGE   L +     S +W   S     +Q L WYK  FDAP+G+EP+A+D  G GKG  W+NGQSIGR
Sbjct:  474 INTTADKSDYLWYSLRTDIKGDETFLDEGSKAVLHIESLGQVVYAFINGKLAGSGHG---KQKISLDIPINLVTGTNTIDLLSVTVGLANYGAFFDLVGAGITGPVTLKSAKGGSSIDLASQQWTYQVGLKGEDTGLAT---VDSSEWVSKS-PLPTKQPLIWYKTTFDAPSGSEPVAIDFTGTGKGIAWVNGQSIGR 664          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGAL3_ORYSJ (Beta-galactosidase 3 OS=Oryza sativa subsp. japonica GN=Os01g0875500 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.044e-38
Identity = 82/197 (41.62%), Postives = 118/197 (59.90%), Query Frame = 3
Query:    3 INITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            IN T+D++DYLWY TS ++  S   L GG    L +ES GHAV  F+N + +GSA+G      F+   P NLRAG NK++LLS+ VGL N G  YE    G+  +V + G+++   DL+  KW Y++GL+GE  +L    +   + W   S   +  Q + WYK   D P G++P+ LD++ MGKG  W+NG +IGR
Sbjct:  474 INTTKDSTDYLWYTTSFDVDGSH--LAGGNH-VLHIESKGHAVQAFLNNELIGSAYGNGSKSNFSVEMPVNLRAGKNKLSLLSMTVGLQNGGPMYEWAGAGIT-SVKISGMENRIIDLSSNKWEYKIGLEGEYYSLFKADKGKDIRWMPQSEPPK-NQPMTWYKVNVDVPQGDDPVGLDMQSMGKGLAWLNGNAIGR 665          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGA13_ARATH (Beta-galactosidase 13 OS=Arabidopsis thaliana GN=BGAL13 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.952e-37
Identity = 75/196 (38.27%), Postives = 113/196 (57.65%), Query Frame = 3
Query:    9 ITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQ-KWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            +T+D SDY WY TS +I  ++   + G KP L + S GHA+HV++NG++LG+  G+ E + F F  P  L+ G N + +L +  G P+ G + E   TG R   +L GL  G  DLT + KW  +VG++GE + + +      V W + S    G   + WY+ YFDAP      A+ + GMGKG +W+NG+ +GR
Sbjct:  481 LTKDESDYGWYTTSFKIDDNDLSKKKGGKPNLRIASLGHALHVWLNGEYLGNGHGSHEEKSFVFQKPVTLKEGENHLTMLGVLTGFPDSGSYMEHRYTGPRSVSIL-GLGSGTLDLTEENKWGNKVGMEGERLGIHAEEGLKKVKWEKASGKEPG---MTWYQTYFDAPESQSAAAIRMNGMGKGLIWVNGEGVGR 672          
The following BLAST results are available for this feature:
BLAST of CF417392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
BGAL9_ORYSJ1.043e-5854.82Beta-galactosidase 9 OS=Oryza sativa subsp. japoni... [more]
BGAL2_ARATH1.778e-5853.30Beta-galactosidase 2 OS=Arabidopsis thaliana GN=BG... [more]
BGAL_DIACA2.839e-5653.30Putative beta-galactosidase OS=Dianthus caryophyll... [more]
BGAL4_ORYSJ1.319e-5350.76Beta-galactosidase 4 OS=Oryza sativa subsp. japoni... [more]
BGAL4_ORYSI1.319e-5350.76Beta-galactosidase 4 OS=Oryza sativa subsp. indica... [more]
BGA10_ARATH1.119e-4444.67Beta-galactosidase 10 OS=Arabidopsis thaliana GN=B... [more]
BGAL6_ORYSJ2.580e-4145.69Beta-galactosidase 6 OS=Oryza sativa subsp. japoni... [more]
BGAL8_ARATH5.379e-3944.95Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BG... [more]
BGAL3_ORYSJ2.044e-3841.62Beta-galactosidase 3 OS=Oryza sativa subsp. japoni... [more]
BGA13_ARATH2.952e-3738.27Beta-galactosidase 13 OS=Arabidopsis thaliana GN=B... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-322 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417392 ID=CF417392; Name=CF417392; organism=Citrus sinensis; type=EST; length=687bp
AGATAAATATCACTAGAGATACTAGTGACTATCTATGGTACATGACCAGT
GTTGAAATTAGTTCTTCAGAATCATTTCTGCGAGGTGGCCAAAAACCCAC
TCTCACCGTGGAATCAGCTGGCCATGCTGTTCATGTCTTCATCAATGGGC
AGTTTTTGGGGTCAGCGTTTGGGACAAGGGAGAACAGAAGGTTTACTTTT
TCAGGACCAGCCAACCTACGTGCTGGAATAAATAAGATTGCACTCCTCAG
CATAGCCGTTGGATTACCTAATGTTGGATTGCATTATGAGACATGGGAAA
CAGGAGTTCGGGGTGCAGTCGTGCTTCATGGTCTGGACCATGGAAATAAG
GACTTAACATGGCAGAAGTGGTCATACCAGGTTGGATTAAAAGGGGAGGC
AATGAATTTAGTATCGCCAAGTGAAGCCACATCTGTTGATTGGACACGAG
GCTCACTCGCTGCTCAAGGCCAGCAGTCTTTGAAATGGTACAAGGCATAT
TTTGATGCACCTGCAGGAAATGAGCCTCTGGCTTTGGACTTGCGAGGTAT
GGGTAAGGGTCAAGTTTGGATCAATGGGCAGAGCATAGGGAGGATACTGG
ATGGCTTATGCAAAAGGTGACTGCAAAACCTGCAGTTATGCTGGGGACAT
TTCGCCCTATAAATTGCCCAACGTCGATGTGGCCATC
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