CF417392

Overview
NameCF417392
Unique NameCF417392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGA16_ARATH (Beta-galactosidase 16 OS=Arabidopsis thaliana GN=BGAL16 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.465e-36
Identity = 85/200 (42.50%), Postives = 108/200 (54.00%), Query Frame = 3
Query:    3 INITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHG---LDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            +N T+DTSDYLW  T  + S        G    L V   GHA+H F+NG+F+GS  GT +  RF      +L  G N +ALLS+ VGLPN G H E    G R   + +G   L   N       W YQVGLKGE  ++ +   +  V W +        Q L WYKA FD P G +P+AL+L  MGKG+ W+NGQSIGR
Sbjct:  460 MNTTQDTSDYLWQTTRFQQSE-------GAPSVLKVNHLGHALHAFVNGRFIGSMHGTFKAHRFLLEKNMSLNNGTNNLALLSVMVGLPNSGAHLERRVVGSRSVKIWNGRYQLYFNN-----YSWGYQVGLKGEKFHVYTEDGSAKVQWKQ--YRDSKSQPLTWYKASFDTPEGEDPVALNLGSMGKGEAWVNGQSIGR 645          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGA15_ORYSJ (Beta-galactosidase 15 OS=Oryza sativa subsp. japonica GN=Os12g0429200 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.499e-36
Identity = 82/199 (41.21%), Postives = 108/199 (54.27%), Query Frame = 3
Query:    3 INITRDTSDYLWYMTSVEISSSES--FLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            +N+T+D SDYLWY T V IS ++   +   G  P+LT++       VF+NG+  GS  G       +   P  L  G+N++ LLS  VGL N G   E    G RG V L GL  G+ DLT   W+YQVGLKGE   + +P +     W+R  +     Q   WYK  F  P G +P+A+DL  MGKGQ W+NG  IGR
Sbjct:  529 LNVTKDISDYLWYTTRVNISDADVAFWSSKGVLPSLTIDKIRDVARVFVNGKLAGSQVG----HWVSLKQPIQLVEGLNELTLLSEIVGLQNYGAFLEKDGAGFRGQVTLTGLSDGDVDLTNSLWTYQVGLKGEFSMIYAPEKQGCAGWSR--MQKDSVQPFTWYKTMFSTPKGTDPVAIDLGSMGKGQAWVNGHLIGR 721          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGAL_BRAOL (Beta-galactosidase OS=Brassica oleracea PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.055e-34
Identity = 80/201 (39.80%), Postives = 111/201 (55.22%), Query Frame = 3
Query:    6 NITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGN---KDLTWQKWSYQVGLKGEAMNLVSPSEATSVD--WTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            ++T D SDYLWYMT V +   +      +  +L V S  H +H ++NG+++G+         + F    NL  G N +ALLS++VGL N G  +E+  TG+ G V L G        KDL+  +W Y++GL G    L S   A      W+   L A   + L WYKA F AP G +P+ +DL G+GKG+VWINGQSIGR
Sbjct:  465 DVTNDASDYLWYMTRVHLDKKDPIW--SRNMSLRVHSNAHVLHAYVNGKYVGNQIVRDNKFDYRFEKKVNLVHGTNHLALLSVSVGLQNYGPFFESGPTGINGPVKLVGYKGDETIEKDLSKHQWDYKIGLNGFNHKLFSMKSAGHHHRKWSTEKLPAD--RMLSWYKANFKAPLGKDPVIVDLNGLGKGEVWINGQSIGR 661          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGA11_ORYSJ (Beta-galactosidase 11 OS=Oryza sativa subsp. japonica GN=Os08g0549200 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.055e-34
Identity = 76/196 (38.78%), Postives = 110/196 (56.12%), Query Frame = 3
Query:    6 NITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            N T+D +DYLWY TS  + + +   R   KP L V S GHA+  F+N  F+G   GT+ N+ FT     +L+ G+N +A+LS  +GL + G + E    GV   V + GL+ G  DLT   W + VGL GE   + S     +V W  G    +  Q L WY+  FD P+G +P+ +DL  MGKG +++NG+ +GR
Sbjct:  472 NQTKDKTDYLWYTTSFRLETDDLPYRKEVKPVLEVSSHGHAIVAFVNDAFVGCGHGTKINKAFTMEKAMDLKVGVNHVAILSSTLGLMDSGSYLEHRMAGVY-TVTIRGLNTGTLDLTTNGWGHVVGLDGERRRVHSEQGMGAVAWKPG----KDNQPLTWYRRRFDPPSGTDPVVIDLTPMGKGFLFVNGEGLGR 662          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGA11_ARATH (Beta-galactosidase 11 OS=Arabidopsis thaliana GN=BGAL11 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.055e-34
Identity = 71/196 (36.22%), Postives = 111/196 (56.63%), Query Frame = 3
Query:    9 ITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLT-WQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            +T+D +DY WY TS ++  +    + G K  + + S GHA+H ++NG++LGS  G+ E + F F     L+AG N + +L +  G P+ G + E   TG RG  +L GL  G  DLT   KW  ++G++GE + + +      V+W + +  A G   L WY+ YFDAP       + + GMGKG +W+NG+ +GR
Sbjct:  478 LTKDKTDYGWYTTSFKVHKNHLPTKKGVKTFVRIASLGHALHAWLNGEYLGSGHGSHEEKSFVFQKQVTLKAGENHLVMLGVLTGFPDSGSYMEHRYTGPRGISIL-GLTSGTLDLTESSKWGNKIGMEGEKLGIHTEEGLKKVEWKKFTGKAPG---LTWYQTYFDAPESVSAATIRMHGMGKGLIWVNGEGVGR 669          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGAL7_ARATH (Beta-galactosidase 7 OS=Arabidopsis thaliana GN=BGAL7 PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.516e-33
Identity = 79/200 (39.50%), Postives = 109/200 (54.50%), Query Frame = 3
Query:    6 NITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPAN-LRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGL---DHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            ++T D SDYLWYMT + +   +      +  TL V S  H +H ++NG+++G+ F       + F    N L  G N I+LLS++VGL N G  +E+  TG+ G V L G    +   KDL+  +W Y++GL G    L S        W    L     + L WYKA F AP G EP+ +DL G+GKG+ WINGQSIGR
Sbjct:  464 DVTNDASDYLWYMTRLHLDKKDPLW--SRNMTLRVHSNAHVLHAYVNGKYVGNQFVKDGKFDYRFERKVNHLVHGTNHISLLSVSVGLQNYGPFFESGPTGINGPVSLVGYKGEETIEKDLSQHQWDYKIGLNGYNDKLFSIKSVGHQKWANEKLPTG--RMLTWYKAKFKAPLGKEPVIVDLNGLGKGEAWINGQSIGR 659          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGA14_ARATH (Beta-galactosidase 14 OS=Arabidopsis thaliana GN=BGAL14 PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.516e-33
Identity = 72/196 (36.73%), Postives = 112/196 (57.14%), Query Frame = 3
Query:    9 ITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTW-QKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            +T+D +DY WY TSV+I   +   + G K  L V S GHA+ V++NG++ G A G  E + F F+ P N + G N+I++L +  GLP+ G + E    G R A+ + GL  G +DLT   +W +  GL+GE   + +   +  V W +       ++ L WYK YF+ P G   +A+ ++ MGKG +W+NG  +GR
Sbjct:  478 LTKDKTDYAWYTTSVKIDEDDFPDQKGLKTILRVASLGHALIVYVNGEYAGKAHGRHEMKSFEFAKPVNFKTGDNRISILGVLTGLPDSGSYMEHRFAGPR-AISIIGLKSGTRDLTENNEWGHLAGLEGEKKEVYTEEGSKKVKWEKDG----KRKPLTWYKTYFETPEGVNAVAIRMKAMGKGLIWVNGIGVGR 668          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGAL6_ARATH (Beta-galactosidase 6 OS=Arabidopsis thaliana GN=BGAL6 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.524e-33
Identity = 75/198 (37.88%), Postives = 107/198 (54.04%), Query Frame = 3
Query:    6 NITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNK--DLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            N+T+D +DYLWY +S ++ S  +       P++  ES+GH VHVF+N    GS  G+R+ R      P +L  G N I++LS  VGLP+ G + E    G+    +  G   G K  DL+  +W Y VGL GE + L        V W+         + L WYK  FD P G+ P+ L +  MGKG++W+NG+SIGR
Sbjct:  468 NLTKDKTDYLWYTSSFKLDSPCT------NPSIYTESSGHVVHVFVNNALAGSGHGSRDIRVVKLQAPVSLINGQNNISILSGMVGLPDSGAYMERRSYGLTKVQISCG---GTKPIDLSRSQWGYSVGLLGEKVRLYQWKNLNRVKWSMNKAGLIKNRPLAWYKTTFDGPNGDGPVGLHMSSMGKGEIWVNGESIGR 656          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGAL9_ARATH (Beta-galactosidase 9 OS=Arabidopsis thaliana GN=BGAL9 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.676e-32
Identity = 75/200 (37.50%), Postives = 107/200 (53.50%), Query Frame = 3
Query:    3 INITRDTSDYLWYMTSVEISSSES--FLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSL-KWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            +N+T+D SDYLW+ T + +S  +   + + G   T++++S    + VF+N Q  GS  G           P     G N + LL+  VGL N G   E    G RG   L G  +G+ DL+   W+YQVGLKGEA  + +       +W+  +L      S+  WYK YFD PAG +P+ L+L  MG+GQ W+NGQ IGR
Sbjct:  495 LNVTKDRSDYLWHKTRISVSEDDISFWKKNGPNSTVSIDSMRDVLRVFVNKQLAGSIVG----HWVKAVQPVRFIQGNNDLLLLTQTVGLQNYGAFLEKDGAGFRGKAKLTGFKNGDLDLSKSSWTYQVGLKGEADKIYTVEHNEKAEWS--TLETDASPSIFMWYKTYFDPPAGTDPVVLNLESMGRGQAWVNGQHIGR 688          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGA12_ORYSJ (Beta-galactosidase 12 OS=Oryza sativa subsp. japonica GN=Os09g0539200 PE=2 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.189e-32
Identity = 69/196 (35.20%), Postives = 108/196 (55.10%), Query Frame = 3
Query:    6 NITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            N T+DTSDYLWY TS  + S +   R   +P + ++S  HA+  F N  F+G+  G++  + F F  P +LR GIN IA+LS ++G+ + G      + G++  VV  GL+ G  DL    W ++  L+GE   + +        W      A+    + WYK YFD P G++P+ +D+  M KG +++NG+ IGR
Sbjct:  473 NQTKDTSDYLWYTTSFRLESDDLPFRRDIRPVIQIKSTAHAMIGFANDAFVGTGRGSKREKSFVFEKPMDLRVGINHIAMLSSSMGMKDSGGELVEVKGGIQDCVV-QGLNTGTLDLQGNGWGHKARLEGEDKEIYTEKGMAQFQWK----PAENDLPITWYKRYFDEPDGDDPIVVDMSSMSKGMIYVNGEGIGR 663          
The following BLAST results are available for this feature:
BLAST of CF417392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
BGA16_ARATH1.465e-3642.50Beta-galactosidase 16 OS=Arabidopsis thaliana GN=B... [more]
BGA15_ORYSJ2.499e-3641.21Beta-galactosidase 15 OS=Oryza sativa subsp. japon... [more]
BGAL_BRAOL3.055e-3439.80Beta-galactosidase OS=Brassica oleracea PE=2 SV=1[more]
BGA11_ORYSJ3.055e-3438.78Beta-galactosidase 11 OS=Oryza sativa subsp. japon... [more]
BGA11_ARATH3.055e-3436.22Beta-galactosidase 11 OS=Arabidopsis thaliana GN=B... [more]
BGAL7_ARATH1.516e-3339.50Beta-galactosidase 7 OS=Arabidopsis thaliana GN=BG... [more]
BGA14_ARATH1.516e-3336.73Beta-galactosidase 14 OS=Arabidopsis thaliana GN=B... [more]
BGAL6_ARATH7.524e-3337.88Beta-galactosidase 6 OS=Arabidopsis thaliana GN=BG... [more]
BGAL9_ARATH1.676e-3237.50Beta-galactosidase 9 OS=Arabidopsis thaliana GN=BG... [more]
BGA12_ORYSJ2.189e-3235.20Beta-galactosidase 12 OS=Oryza sativa subsp. japon... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-322 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417392 ID=CF417392; Name=CF417392; organism=Citrus sinensis; type=EST; length=687bp
AGATAAATATCACTAGAGATACTAGTGACTATCTATGGTACATGACCAGT
GTTGAAATTAGTTCTTCAGAATCATTTCTGCGAGGTGGCCAAAAACCCAC
TCTCACCGTGGAATCAGCTGGCCATGCTGTTCATGTCTTCATCAATGGGC
AGTTTTTGGGGTCAGCGTTTGGGACAAGGGAGAACAGAAGGTTTACTTTT
TCAGGACCAGCCAACCTACGTGCTGGAATAAATAAGATTGCACTCCTCAG
CATAGCCGTTGGATTACCTAATGTTGGATTGCATTATGAGACATGGGAAA
CAGGAGTTCGGGGTGCAGTCGTGCTTCATGGTCTGGACCATGGAAATAAG
GACTTAACATGGCAGAAGTGGTCATACCAGGTTGGATTAAAAGGGGAGGC
AATGAATTTAGTATCGCCAAGTGAAGCCACATCTGTTGATTGGACACGAG
GCTCACTCGCTGCTCAAGGCCAGCAGTCTTTGAAATGGTACAAGGCATAT
TTTGATGCACCTGCAGGAAATGAGCCTCTGGCTTTGGACTTGCGAGGTAT
GGGTAAGGGTCAAGTTTGGATCAATGGGCAGAGCATAGGGAGGATACTGG
ATGGCTTATGCAAAAGGTGACTGCAAAACCTGCAGTTATGCTGGGGACAT
TTCGCCCTATAAATTGCCCAACGTCGATGTGGCCATC
back to top