CF417392

Overview
NameCF417392
Unique NameCF417392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGA15_ARATH (Beta-galactosidase 15 OS=Arabidopsis thaliana GN=BGAL15 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.734e-29
Identity = 74/198 (37.37%), Postives = 101/198 (51.01%), Query Frame = 3
Query:    9 ITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGN---KDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            ++ D SDYLWYMT+V +   +  L  G+  +L + S  H +H F+NGQ +G+         + F   A    G N I LLSI VGLPN G  +E +  G+ G V + G +      KDL+  KWSY+ GL G    L S SE+ S                      + AP G+EP+ +DL G+GKG  WING +IGR
Sbjct:  463 VSNDESDYLWYMTTVNLKEQDPVL--GKNMSLRINSTAHVLHAFVNGQHIGNYRVENGKFHYVFEQDAKFNPGANVITLLSITVGLPNYGAFFENFSAGITGPVFIIGRNGDETIVKDLSTHKWSYKTGLSGFENQLFS-SESPST---------------------WSAPLGSEPVVVDLLGLGKGTAWINGNNIGR 636          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGAL7_ORYSJ (Beta-galactosidase 7 OS=Oryza sativa subsp. japonica GN=Os05g0428100 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.272e-28
Identity = 72/201 (35.82%), Postives = 108/201 (53.73%), Query Frame = 3
Query:    3 INITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTREN-RRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHG---LDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            +  T+D +DYLWY+ S +  +S+    G Q   L V+S  H +H F+N +++GS  G+ +  R    +   +L+ G N I+LLS+ VG P+ G + E    G++   +  G   +   N DL    W YQVGL GE  ++ +     SV W    +       L WYK  F  P GN+ + L+L  MGKG+VW+NG+SIGR
Sbjct:  430 LTTTKDETDYLWYIVSYKNRASD----GNQIAHLYVKSLAHILHAFVNNEYVGSVHGSHDGPRNIVLNTHMSLKEGDNTISLLSVMVGSPDSGAYMERRTFGIQTVGIQQGQQPMHLLNNDL----WGYQVGLFGEKDSIYTQEGTNSVRWM--DINNLIYHPLTWYKTTFSTPPGNDAVTLNLTSMGKGEVWVNGESIGR 620          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGA10_ORYSJ (Putative beta-galactosidase 10 OS=Oryza sativa subsp. japonica GN=Os06g0628500 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.999e-26
Identity = 68/194 (35.05%), Postives = 96/194 (49.48%), Query Frame = 3
Query:   18 DTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNK--DLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            D SDYLWY TS+      S+       TL V + GH ++ F+NG  +G       +  F    PA L  G N I+LLS  +GL N G  +E    G+ G  V   +D+  K  DL+   WSY+ GL GE   +       + D   G++     +   WYK  F APAG + + +DL G+ KG  W+NG ++GR
Sbjct:  459 DQSDYLWYRTSINHKGEASY-------TLFVNTTGHELYAFVNGMLVGQNHSPNGHFVFQLESPAKLHDGKNYISLLSATIGLKNYGPLFEKMPAGIVGGPV-KLIDNNGKGIDLSNSSWSYKAGLAGEYRQIHLDKPGCTWDNNNGTVPI--NKPFTWYKTTFQAPAGEDTVVVDLLGLNKGVAWVNGNNLGR 642          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGAL1_ORYSJ (Beta-galactosidase 1 OS=Oryza sativa subsp. japonica GN=Os01g0533400 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.680e-24
Identity = 65/193 (33.68%), Postives = 93/193 (48.19%), Query Frame = 3
Query:   18 DTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNK-DLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            D SDYLWY TS+      S+        L V + GH ++ F+NG+ +G       +  F    P  L  G N I+LLS  VGL N G  +E   TG+ G  V     +G   DL+   WSY+ GL  E   +    +     W   +      +   WYKA F+AP+G + + +DL G+ KG  W+NG ++GR
Sbjct:  478 DQSDYLWYRTSLNHKGEGSY-------KLYVNTTGHELYAFVNGKLIGKNHSADGDFVFQLESPVKLHDGKNYISLLSATVGLKNYGPSFEKMPTGIVGGPVKLIDSNGTAIDLSNSSWSYKAGLASEYRQI--HLDKPGYKWNGNNGTIPINRPFTWYKATFEAPSGEDAVVVDLLGLNKGVAWVNGNNLGR 661          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGA13_ORYSJ (Beta-galactosidase 13 OS=Oryza sativa subsp. japonica GN=Os10g0330600 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 65/193 (33.68%), Postives = 93/193 (48.19%), Query Frame = 3
Query:   18 DTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNK-DLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            D SDYLWY TS++     S+       TL V + GH ++ F+NG  +G       +  F       L  G N I+LLS  +GL N G  +E    G+ G  V    ++G   DL+   WSY+ GL GE   +         D   G++     +   WYK  F APAG + + +DL G+ KG  W+NG ++GR
Sbjct:  478 DQSDYLWYRTSLDHKGEASY-------TLFVNTTGHELYAFVNGMLVGKNHSPNGHFVFQLESAVKLHDGKNYISLLSATIGLKNYGPLFEKMPAGIVGGPVKLIDNNGTGIDLSNSSWSYKAGLAGEYRQIHLDKPGYRWDNNNGTVPIN--RPFTWYKTTFQAPAGQDTVVVDLLGLNKGVAWVNGNNLGR 661          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGA14_ORYSJ (Beta-galactosidase 14 OS=Oryza sativa subsp. japonica GN=Os10g0340600 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 62/195 (31.79%), Postives = 87/195 (44.62%), Query Frame = 3
Query:   12 TRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNK-DLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQGQQSLKWYKAYFDAPAGNEPLALDLRGMGKGQVWINGQSIGR 593
            T D SDYLWY TS+E     S++       L V + GH ++ F+NG+ +G  +   EN  FTF                   +  PN G  +E    G+ G  V      G+  DL+   WSY+ GL GE   +          W   +      +   WYK  F APAG + + +DL G+ KG  W+NG S+GR
Sbjct:  476 TTDQSDYLWYRTSLEHKGEGSYV-------LYVNTTGHELYAFVNGKLVGQQYSPNEN--FTFQ------------------LKSPNYGGSFELLPAGIVGGPVKLIDSSGSAIDLSNNSWSYKAGLAGEYRKIYLDKPGNK--WRSHNSTIPINRPFTWYKTTFQAPAGEDSVVVDLHGLNKGVAWVNGNSLGR 641          
BLAST of CF417392 vs. ExPASy Swiss-Prot
Match: BGAL2_DICDI (Probable beta-galactosidase 2 OS=Dictyostelium discoideum GN=glb2 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.166e-17
Identity = 61/203 (30.05%), Postives = 101/203 (49.75%), Query Frame = 3
Query:    9 ITRDTSDYLWYMTSVEISSSESFLRGGQKPTLTVESAGHAVHVFINGQFLGSAFGTRENRRFTFSGPANLRAGINKIALLSIAVGLPNVGLHYETWETGVRGAVVLHGLDHGNKDLTWQKWSYQVGLKGEAMNLVSPSEATSVDWTRGSLAAQG---QQSLKWYKAYFDAPA-----GNEPLALDLRGMGKGQVWINGQSIGR 593
            IT+DTSDY WY T+V  +S     +G     LT+      VH+FI+ ++ GSAF     +      P N  +   ++ +LS+ +GL N   H E +  G+ G++++     G+++LT  +W  + GL GE + + +     +++W     ++     Q+ L WYK             +   ALD+  M KG +W+NG SIGR
Sbjct:  488 ITKDTSDYCWYSTNVTTTSLSYNEKGNI--FLTITEFYDYVHIFIDNEYQGSAFSPSLCQLQL--NPIN-NSTTFQLQILSMTIGLENYASHMENYTRGILGSILI-----GSQNLTNNQWLMKSGLIGENIKIFNNDN--TINWQTSPSSSSSSLIQKPLTWYKLNISLVGLPIDISSTVYALDMSSMNKGMIWVNGYSIGR 678          
The following BLAST results are available for this feature:
BLAST of CF417392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
BGA15_ARATH1.734e-2937.37Beta-galactosidase 15 OS=Arabidopsis thaliana GN=B... [more]
BGAL7_ORYSJ4.272e-2835.82Beta-galactosidase 7 OS=Oryza sativa subsp. japoni... [more]
BGA10_ORYSJ3.999e-2635.05Putative beta-galactosidase 10 OS=Oryza sativa sub... [more]
BGAL1_ORYSJ1.680e-2433.68Beta-galactosidase 1 OS=Oryza sativa subsp. japoni... [more]
BGA13_ORYSJ4.888e-2433.68Beta-galactosidase 13 OS=Oryza sativa subsp. japon... [more]
BGA14_ORYSJ2.510e-2031.79Beta-galactosidase 14 OS=Oryza sativa subsp. japon... [more]
BGAL2_DICDI1.166e-1730.05Probable beta-galactosidase 2 OS=Dictyostelium dis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-322 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417392 ID=CF417392; Name=CF417392; organism=Citrus sinensis; type=EST; length=687bp
AGATAAATATCACTAGAGATACTAGTGACTATCTATGGTACATGACCAGT
GTTGAAATTAGTTCTTCAGAATCATTTCTGCGAGGTGGCCAAAAACCCAC
TCTCACCGTGGAATCAGCTGGCCATGCTGTTCATGTCTTCATCAATGGGC
AGTTTTTGGGGTCAGCGTTTGGGACAAGGGAGAACAGAAGGTTTACTTTT
TCAGGACCAGCCAACCTACGTGCTGGAATAAATAAGATTGCACTCCTCAG
CATAGCCGTTGGATTACCTAATGTTGGATTGCATTATGAGACATGGGAAA
CAGGAGTTCGGGGTGCAGTCGTGCTTCATGGTCTGGACCATGGAAATAAG
GACTTAACATGGCAGAAGTGGTCATACCAGGTTGGATTAAAAGGGGAGGC
AATGAATTTAGTATCGCCAAGTGAAGCCACATCTGTTGATTGGACACGAG
GCTCACTCGCTGCTCAAGGCCAGCAGTCTTTGAAATGGTACAAGGCATAT
TTTGATGCACCTGCAGGAAATGAGCCTCTGGCTTTGGACTTGCGAGGTAT
GGGTAAGGGTCAAGTTTGGATCAATGGGCAGAGCATAGGGAGGATACTGG
ATGGCTTATGCAAAAGGTGACTGCAAAACCTGCAGTTATGCTGGGGACAT
TTCGCCCTATAAATTGCCCAACGTCGATGTGGCCATC
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