CF417399

Overview
NameCF417399
Unique NameCF417399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.927e-43
Identity = 92/193 (47.67%), Postives = 126/193 (65.28%), Query Frame = 1
Query:   88 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG-KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLD 660
            AK+K+ INGFGRIGR   R    R D  +E+VA+ND        +++ KYDS  G ++ D   V      + G K + V ++RNP  +PW   G D+++E TGVF D++ A  H++ GAKKV+I+AP K D P +VVGVN + YKP+  IISNASCTTNCLAP  KV++ +FGI++G MTT HS T  Q+ +D
Sbjct:    3 AKIKIGINGFGRIGRLVARVALKRDD--VELVAVNDPFITTDYMTYMFKYDSVHGQWKNDELTVKDSNTLLFGQKPVTVFAHRNPEEIPWASTGADIIVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNENEYKPEFDIISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVD 192          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.927e-43
Identity = 92/193 (47.67%), Postives = 124/193 (64.25%), Query Frame = 1
Query:   88 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEA-DVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLD 660
            A +K+ INGFGRIGR   R    R+D   E+VA+ND     +  +++ KYDS  G ++  D+K      +    K + V  NRNP  +PWG  G D V+E TGVF D++ A  H++ GAKKV+I+AP K D P +VVGVN   YKP+  I+SNASCTTNCLAP  KV++ +FGI++G MTT HS T  Q+ +D
Sbjct:    2 APIKIGINGFGRIGRLVARVILQREDC--ELVAVNDPFITTEYMTYMFKYDSVHGQWKHHDIKVKDEKTLLFGEKAVTVFGNRNPEEIPWGGTGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNEHEYKPELDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVD 191          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3PA_SINAL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Sinapis alba GN=GAPA PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.927e-43
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 1
Query:  400 DREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHR 672
            DREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNA+ Y  ++ IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHR
Sbjct:    1 DREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNAELYSHEDTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHR 91          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.741e-43
Identity = 91/190 (47.89%), Postives = 128/190 (67.37%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLD 660
            +KV INGFGRIGR   R  +  + + +++VA+ND       A+++LKYDST G F+ D+K  G + ++V+GK I+    ++P N+PW + G   V+E TGVF   E A  H++ GAKKV+I+AP   D P +V+GVN + YKPD   +SNASCTTNCLAP  KV+  K+ II+G MTT HSYT  Q+++D
Sbjct:    3 VKVGINGFGRIGRIVFR--NAIEHNDVDIVAVNDPFIEPHYAAYMLKYDSTHGQFKGDIKVDGNN-LTVNGKTIRFHMEKDPANIPWSETGAYYVVESTGVFTTTEKAKAHLKGGAKKVVISAPSP-DAPMFVMGVNHETYKPDIEALSNASCTTNCLAPLAKVIHDKYTIIEGLMTTIHSYTATQKVVD 188          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P_MYCLE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium leprae GN=gapA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.011e-42
Identity = 94/196 (47.96%), Postives = 123/196 (62.76%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRCWHGRKD---SPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN-PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH 669
            ++V INGFGRIGRNF R    +++   + ++VVAIND       ++LLK+DS LG    DV     D I V  + I+ ++ R  P  LPW   G+D+V+E TG+F +   A  H++AGAKKV+++AP      T V GVN D Y   + IISNASCTTNCLAP  KVL  +FGI+KG MTT H+YT DQ L D  H
Sbjct:    3 VRVGINGFGRIGRNFYRALLAQQEHGIADVQVVAINDITDNSTLAYLLKFDSILGRLPHDVSLEEEDTIVVGSEKIKALAVREGPAALPWHAFGVDVVVESTGLFTNAAKAKGHLEAGAKKVIVSAPATDPDITIVFGVNDDKYDGSQNIISNASCTTNCLAPLAKVLHDQFGIVKGLMTTVHAYTQDQNLQDGPH 198          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P_MONAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Monascus anka GN=GPD1 PE=3 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 1.011e-42
Identity = 92/189 (48.68%), Postives = 126/189 (66.67%), Query Frame = 1
Query:   97 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLD 660
            KV INGFGRIGR   R  +  +   +++VA+ND    V  A+++LKYDST G F   V+  G   I V+GK I+  + R+P  +PW + G + V+E TGVF  +E A  H++ GAKKV+I+AP   D P +V+GVN D Y  D  ++SNASCTTNCLAP  KV++ KFGI++G MTT HSYT  Q+++D
Sbjct:    5 KVGINGFGRIGRIVFR--NAIEHEGVDIVAVNDPFIEVHYAAYMLKYDSTHGRFNGTVEFDGNTLI-VNGKKIKFYAERDPAQIPWSETGAEYVVESTGVFTKQEKASLHLKGGAKKVIISAPSS-DSPMFVMGVNNDQYTKDITVLSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSYTATQKVVD 189          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P3_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluyveromyces marxianus GN=GAP3 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.011e-42
Identity = 98/195 (50.26%), Postives = 128/195 (65.64%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDA-SHR 672
            +++AINGFGRIGR  LR    RK+  +EVVAIND    V  A+++ KYDST G F+ +V   G   + +DGK + V   R+P  LPWG   ID+ I+ TG+F + + A KHI AGAKKV+ITAP     P +VVGVN D Y   + I+SNASCTTNCLAP  K+++  FGI +G MTT HS T  Q+ +D  SH+
Sbjct:    2 VRIAINGFGRIGRLVLRIALSRKN--IEVVAINDPFITVDYAAYMFKYDSTHGRFDGEVSHDGK-ALIIDGKKVLVFQERDPATLPWGAEKIDIAIDSTGIFKELDSAQKHIDAGAKKVVITAP-SSTAPMFVVGVNEDKY-AGQTIVSNASCTTNCLAPLAKIINNAFGIEEGLMTTVHSITATQKTVDGPSHK 191          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P2_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces marxianus GN=GAP2 PE=3 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.011e-42
Identity = 99/195 (50.77%), Postives = 128/195 (65.64%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDA-SHR 672
            +++AINGFGRIGR  LR    RK+  +EVVAIND    V  A+++ KYDST G F+ +V   G   I +DGK + V   R+P  LPWG   ID+ I+ TG+F + + A KHI AGAKKV+ITAP     P +VVGVN D Y   + I+SNASCTTNCLAP  K+++  FGI +G MTT HS T  Q+ +D  SH+
Sbjct:    2 VRIAINGFGRIGRLVLRIALSRKN--IEVVAINDPFITVDYAAYMFKYDSTHGRFDGEVSHDGKSLI-IDGKKVLVFQERDPATLPWGAEKIDIAIDSTGIFKELDSAQKHIDAGAKKVVITAP-SSTAPMFVVGVNEDKY-AGQTIVSNASCTTNCLAPLAKIINNAFGIEEGLMTTVHSITATQKTVDGPSHK 191          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P1_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agaricus bisporus GN=gpd1 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.011e-42
Identity = 95/192 (49.48%), Postives = 125/192 (65.10%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDG-ISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDA 663
            + V INGFGRIGR  LR  +  +   L VVA+ND    V+  ++L KYDS  G ++  V+    DG + +DG  I   + R P N+ W D G + ++E TGVF   E A +H++ GAKKV+ITAPG G +PTYVVGVN D Y P E +ISNASCTTNCLA   KV++ KFGI++G MTT H+ T  Q+ +DA
Sbjct:    2 VNVGINGFGRIGRLVLR--NALQMQILTVVAVNDPFLDVEYMAYLFKYDSVHGRYQGKVET--KDGKLIIDGHKIAAFAEREPANIKWADCGAEYIVESTGVFKTEELAKEHLKGGAKKVVITAPGSG-VPTYVVGVNLDKYDPKEVVISNASCTTNCLAVLAKVINDKFGIVEGLMTTVHATTATQKTVDA 188          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P_SCLSC (Glyceraldehyde-3-phosphate dehydrogenase OS=Sclerotinia sclerotiorum GN=GPD PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.320e-42
Identity = 91/192 (47.40%), Postives = 127/192 (66.15%), Query Frame = 1
Query:   88 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLD 660
            A  KV INGFGRIGR   R  +  +   +++VA+ND     + A+++LKYDST G F+ D+K V +DG+ V+GK ++  + R+P N+PW +     V+E TGVF   E A  H++ GAKKV+I+AP   D P YV+GVN + Y  +  +ISNASCTTNCLAP  KV++ +F II+  MTT HSYT  Q+ +D
Sbjct:    2 APTKVGINGFGRIGRIVFR--NAIEHDDIDIVAVNDPFIETEYAAYMLKYDSTHGQFKGDIK-VLSDGLEVNGKKVKFYTERDPANIPWAESEAYYVVESTGVFTTTEKAKAHLKGGAKKVVISAPS-ADAPMYVMGVNNETYNGEADVISNASCTTNCLAPLAKVINDEFTIIESLMTTIHSYTATQKTVD 189          
The following BLAST results are available for this feature:
BLAST of CF417399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3PC_PEA5.927e-4347.67Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_DIACA5.927e-4347.67Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PA_SINAL5.927e-4392.31Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P_COCHE7.741e-4347.89Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]
G3P_MYCLE1.011e-4247.96Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_MONAN1.011e-4248.68Glyceraldehyde-3-phosphate dehydrogenase OS=Monasc... [more]
G3P3_KLUMA1.011e-4250.26Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluy... [more]
G3P2_KLUMA1.011e-4250.77Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P1_AGABI1.011e-4249.48Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agar... [more]
G3P_SCLSC1.320e-4247.40Glyceraldehyde-3-phosphate dehydrogenase OS=Sclero... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-329 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417399 ID=CF417399; Name=CF417399; organism=Citrus sinensis; type=EST; length=672bp
TCTTCTGATGACTTCCATTCAGTCATTGCTCTCCAGACCTCTGCTTTAGG
AAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAAGCTGAAGG
TTGCAATCAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGAGGTGCTGG
CACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGCCATCAATGACACCGG
AGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACGACTCCACCCTTGGCA
TCTTTGAAGCCGATGTTAAACCAGTTGGTACTGATGGCATCTCTGTTGAT
GGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTG
GGGGGACTTGGGCATCGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAG
ACAGAGAGGGTGCGGGCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTT
ATTACAGCCCCCGGCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAA
TGCGGATGCTTACAAGCCAGATGAGCCCATCATCAGCAATGCTTCTTGCA
CAACCAACTGCCTTGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGC
ATTATCAAGGGAACCATGACCACCACACACTCGTACACTGGCGACCAAAG
GCTACTCGATGCTAGCCACCGT
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