CF417399

Overview
NameCF417399
Unique NameCF417399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.320e-42
Identity = 89/190 (46.84%), Postives = 127/190 (66.84%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLD 660
            +KV INGFGRIGR   R  +  + + +E+VA+ND       A+++LKYDS  G F+ D+K  G D ++++GK I+  + ++P N+PW + G   V+E TGVF   + A  H++ GAKKV+I+AP   D P +V+GVN + Y  D  ++SNASCTTNCLAP  KV+  KF II+G MTT HSYT  Q+++D
Sbjct:    3 VKVGINGFGRIGRIVFR--NAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSQHGQFKGDIKVEGND-LTINGKTIRFYTEKDPANIPWSETGAYYVVESTGVFTTTDKAKAHLKGGAKKVVISAPS-ADAPMFVMGVNNETYTKDIEVLSNASCTTNCLAPLAKVIHDKFTIIEGLMTTVHSYTATQKVVD 188          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.320e-42
Identity = 88/190 (46.32%), Postives = 124/190 (65.26%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLD 660
            +KV INGFGRIGR   R  +  +   + VVA+ND       A+++LKYDST G F+  +  V ++G++V+GK +     R+P ++PWG  G++ V+E TGVF   E A  H++ GAKKV+I+AP   D P +V+GVN   Y P   ++SNASCTTNCLAP  KV++  FG+ +G MTT HSYT  Q+ +D
Sbjct:    3 VKVGINGFGRIGRIVFR--NAIEHGEVNVVAVNDPFIETHYAAYMLKYDSTHGQFKGTID-VNSNGLTVNGKAVTFYQERDPASIPWGKHGVEYVVESTGVFTTTEKASAHLKGGAKKVIISAPS-ADAPMFVMGVNEKTYDPSVNVLSNASCTTNCLAPLAKVINDNFGLTEGLMTTIHSYTATQKTVD 188          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P_BACFR (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacteroides fragilis GN=gap PE=3 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.724e-42
Identity = 90/189 (47.62%), Postives = 122/189 (64.55%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLD 660
            +KV INGFGRIGR   R       + +++V IND    +  +++LKYDS  G FE +V  V    + V+G  I++ +  +P NL W ++  D+V+E TG F+  E A KHIQAGAKKV+++AP K   P +V GVN  +Y   + IISNASCTTNCLAP  KVL+ KFGI+KG MTT H+ T  Q+ +D
Sbjct:    2 IKVGINGFGRIGRMVFRAAVKNFGNDIQIVGINDLLDAEYLAYMLKYDSVHGRFEGEVA-VEDGALIVNGNKIRLTAEMDPANLKWNEVDADVVVESTGFFLTDETARKHIQAGAKKVIMSAPSKDSTPMFVYGVNHTSY-AGQDIISNASCTTNCLAPIAKVLNDKFGIVKGLMTTVHAATATQKTVD 188          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P2_STAES (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.724e-42
Identity = 96/193 (49.74%), Postives = 126/193 (65.28%), Query Frame = 1
Query:  100 VAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK-GDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHR 672
            +AING GRIGR  LR     K+  L V AIN +   +  +HLL YD+T G+++  V+P+ + GI V+G  I+++S+RNP NLPW ++ ID+VIE TG F   + A  HI AGAKKVL+T P K GD+   V GVN +    D   I SNASCTTNC+ P  KVL+ KFGII G MTT H+ T DQ+ +D  H+
Sbjct:    5 IAINGMGRIGRMVLRIALNNKN--LNVKAINASYPPETIAHLLNYDTTHGVYDKKVEPIES-GIKVNGHEIKLLSDRNPENLPWNEMDIDVVIEATGKFNHGDKAVAHINAGAKKVLLTGPSKGGDVQMIVKGVNDNQLDIDTYDIFSNASCTTNCIGPVAKVLNDKFGIINGLMTTVHAITNDQKNIDNPHK 194          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P2_STAEQ (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.724e-42
Identity = 96/193 (49.74%), Postives = 126/193 (65.28%), Query Frame = 1
Query:  100 VAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK-GDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHR 672
            +AING GRIGR  LR     K+  L V AIN +   +  +HLL YD+T G+++  V+P+ + GI V+G  I+++S+RNP NLPW ++ ID+VIE TG F   + A  HI AGAKKVL+T P K GD+   V GVN +    D   I SNASCTTNC+ P  KVL+ KFGII G MTT H+ T DQ+ +D  H+
Sbjct:    5 IAINGMGRIGRMVLRIALNNKN--LNVKAINASYPPETIAHLLNYDTTHGVYDKKVEPIES-GIKVNGHEIKLLSDRNPENLPWNEMDIDVVIEATGKFNHGDKAVAHINAGAKKVLLTGPSKGGDVQMIVKGVNDNQLDIDTYDIFSNASCTTNCIGPVAKVLNDKFGIINGLMTTVHAITNDQKNIDNPHK 194          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.252e-42
Identity = 89/190 (46.84%), Postives = 128/190 (67.37%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLD 660
            +KV INGFGRIGR   R  +  + + +E+VA+ND       A+++LKYDST G F+ D+K  G + ++V+GK ++    ++P N+PW + G   V+E TGVF   E A  H++ GAKKV+I+AP   D P +V+GVN + YK D  ++SN+SCTTNCLAP  KV+  K+ II+G MTT HSYT  Q+++D
Sbjct:    3 VKVGINGFGRIGRIVFR--NAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSTHGQFKGDIKVDGNN-LTVNGKTVRFHMEKDPANIPWSETGAYYVVESTGVFTTTEKAKAHLKGGAKKVVISAPS-ADAPMFVMGVNHETYKSDIEVLSNSSCTTNCLAPLAKVIHDKYTIIEGLMTTIHSYTATQKVVD 188          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P_CRYPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria parasitica PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.941e-42
Identity = 92/190 (48.42%), Postives = 122/190 (64.21%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLD 660
            +KV INGFGRIGR   R  H   D  +E+VA+ND       A+++LKYDS  G F+ DV   G+D + V GK ++  + R+P  +PW + G D ++E TGVF   E A  H++ GAKKV+I+AP   D P YV+GVN   Y     +ISNASCTTNCLAP  KV++ +F II+G MTT HSYT  Q+ +D
Sbjct:    3 VKVGINGFGRIGRIVFRNAHEHSD--VEIVAVNDPFIEPHYAAYMLKYDSQHGNFKGDVTVEGSD-LVVGGKKVRFYTERDPAAIPWSETGADYIVESTGVFTTTEKAKAHLKGGAKKVIISAPS-ADAPMYVMGVNEKTYDGSGMVISNASCTTNCLAPLAKVINDEFKIIEGLMTTVHSYTATQKTVD 188          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.941e-42
Identity = 95/199 (47.74%), Postives = 126/199 (63.32%), Query Frame = 1
Query:   76 VAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIF---EADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLD 660
            + +  K+K+ INGFGRIGR   R    R D  +E+V +ND        S++ KYDS  G +   E +VK   T  +    K + V   RNP  +PWG++G + V+E TGVF D+E A  H++AGAKKV+I+AP K D P +VVGVN   YK D  I+SNASCTTNCLAP  KV++ KFGI++G MTT HS T  Q+ +D
Sbjct:    1 MGSTGKIKIGINGFGRIGRLVARVALTRDD--IELVGVNDPFISTDYMSYMFKYDSVHGKWKHHEVNVKDSKT--LLFGEKSVAVFGCRNPEEIPWGEVGAEYVVESTGVFTDKEKASAHLKAGAKKVVISAPSK-DAPMFVVGVNEHQYKSDVNIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSITATQKTVD 194          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.941e-42
Identity = 92/193 (47.67%), Postives = 124/193 (64.25%), Query Frame = 1
Query:   88 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG-KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLD 660
            AK+K+ INGFGRIGR   R    R D  +E+VA+ND    V+  +++ KYDS  G ++        D   + G K + V   RNP  +PWG+ G D V+E TGVF D++ A  H++ GAKKV+I+AP K D P +VVGVN   YK D  ++SNASCTTNCLAP  KV++ +FGI++G MTT HS T  Q+ +D
Sbjct:    2 AKIKIGINGFGRIGRLVARVALQRDD--VELVAVNDPFISVEYMTYMFKYDSVHGQWKHHELKAKDDKTLLFGEKPVTVFGIRNPEEIPWGEAGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSK-DAPMFVVGVNEKEYKSDLTVVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSMTATQKTVD 191          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P2_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Trichoderma koningii GN=gpd2 PE=1 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 2.941e-42
Identity = 90/192 (46.88%), Postives = 125/192 (65.10%), Query Frame = 1
Query:   88 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLD 660
            A +KV INGFGRIGR   R  +  +   +EVVA+ND       A+++LKYDS+ G+F+ +V+  G D + V+GK ++  + RNP ++ W + G + V+E TGVF   E A  H+  GAKKV+I+AP   D P YV+GVN   Y     +ISNASCTTNCLAP  KV++  +GI++G MTT HSYT  Q+ +D
Sbjct:    2 APIKVGINGFGRIGRIVFR--NAVEHPDIEVVAVNDPFIETTYAAYMLKYDSSHGLFKGEVEVDGKD-LVVNGKKVRFYTERNPADIKWSETGAEYVVESTGVFTTTEKAKAHLVGGAKKVIISAPS-ADAPMYVMGVNESDYDGSADVISNASCTTNCLAPLAKVINDNYGIVEGLMTTVHSYTATQKTVD 189          
The following BLAST results are available for this feature:
BLAST of CF417399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P_PHANO1.320e-4246.84Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]
G3P_AJECA1.320e-4246.32Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]
G3P_BACFR1.724e-4247.62Glyceraldehyde-3-phosphate dehydrogenase OS=Bacter... [more]
G3P2_STAES1.724e-4249.74Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAEQ1.724e-4249.74Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P_CURLU2.252e-4246.84Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_CRYPA2.941e-4248.42Glyceraldehyde-3-phosphate dehydrogenase OS=Crypho... [more]
G3PC_PINSY2.941e-4247.74Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETHY2.941e-4247.67Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_TRIKO2.941e-4246.88Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Tric... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-329 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417399 ID=CF417399; Name=CF417399; organism=Citrus sinensis; type=EST; length=672bp
TCTTCTGATGACTTCCATTCAGTCATTGCTCTCCAGACCTCTGCTTTAGG
AAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAAGCTGAAGG
TTGCAATCAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGAGGTGCTGG
CACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGCCATCAATGACACCGG
AGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACGACTCCACCCTTGGCA
TCTTTGAAGCCGATGTTAAACCAGTTGGTACTGATGGCATCTCTGTTGAT
GGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTG
GGGGGACTTGGGCATCGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAG
ACAGAGAGGGTGCGGGCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTT
ATTACAGCCCCCGGCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAA
TGCGGATGCTTACAAGCCAGATGAGCCCATCATCAGCAATGCTTCTTGCA
CAACCAACTGCCTTGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGC
ATTATCAAGGGAACCATGACCACCACACACTCGTACACTGGCGACCAAAG
GCTACTCGATGCTAGCCACCGT
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