CF417399

Overview
NameCF417399
Unique NameCF417399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P_TREPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Treponema pallidum GN=gap PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.760e-32
Identity = 86/201 (42.79%), Postives = 117/201 (58.21%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRCWHGRK--DSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRN--PVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-----IPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKV-LDQKFGIIKGTMTTTHSYTGDQRLLD 660
            ++VAINGFGRIGR  L+    +K      +V A+ D     +  ++ LKYDS  G   + +     D + V G  I+ V  R   P  LPW DLGI++VIE TG++ +    G H++AGAK+V+I+AP K       + T V+GVN   + P E  ++SNASCTTNCLAP V V L +  GI  G MTT HSYT  Q+ +D
Sbjct:    1 MRVAINGFGRIGRLVLQAMAEQKLLGKEFDVAAVVDLSTDARYFAYQLKYDSVQGKMGSSLSAPAEDILEVGGHRIKCVCGRGLKPSQLPWKDLGIEVVIEATGIYANESSYG-HLEAGAKRVIISAPAKSSDASKPVKTIVMGVNEHEFDPAEHKVVSNASCTTNCLAPVVHVFLKEGVGIETGLMTTIHSYTATQKTVD 200          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: E4PD_PSYIN (D-erythrose-4-phosphate dehydrogenase OS=Psychromonas ingrahamii (strain 37) GN=epd PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.604e-32
Identity = 76/194 (39.18%), Postives = 111/194 (57.22%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH 669
            +++AING+GRIGR+ +R  +   +   ++VV IN+       +HL +YDST G F   V  +  + + +    I +V      +LPW +  ID+V++ TG++  R  A  HI AGAKKV+ + P   D+  T V G+N      DE  IS ASCTTNC+ P +  LD+ F I  GT+TT HS   DQ ++DA H
Sbjct:    3 IRIAINGYGRIGRSVVRALYENNRQDEMKVVVINELAEPSAIAHLTQYDSTHGRFPFPVN-LQNNLLKIKNDDIHLVRFSELADLPWHEHDIDIVLDCTGIYGSRADADAHIAAGAKKVIFSHPADPDVDATVVYGINHQQLTGDETFISGASCTTNCMVPVIDTLDKHFAIKCGTITTIHSAMNDQPVIDAYH 195          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P3_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap3 PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.789e-31
Identity = 79/196 (40.31%), Postives = 116/196 (59.18%), Query Frame = 1
Query:   91 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDT-GGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHR 672
            K++V INGFGR+GR  LR   G  +  LE V IN+  GG   A+HLLK+DS  G +  +V+  G + + +D   +       P ++PW D G+DLV+E +G F        + + G +KV++ AP K +    V+GVN   Y+P++  +++ ASCTTNCLAP VKV+ +  GI  G +TT H  T  Q L+DA H+
Sbjct:    2 KIRVGINGFGRMGRLALRAAWGWPE--LEFVHINEIKGGAVAAAHLLKFDSVHGRWTPEVEAEG-ERVLIDSTPLSFSEYGKPEDVPWEDFGVDLVLECSGKFRTPATLDPYFKRGVQKVIVAAPVKEEALNIVMGVNDYLYEPEKHHLLTAASCTTNCLAPVVKVIHEGLGIKHGIITTIHDNTNTQTLVDAPHK 194          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P3_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena sp. (strain PCC 7120) GN=gap3 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.789e-31
Identity = 82/198 (41.41%), Postives = 118/198 (59.60%), Query Frame = 1
Query:   91 KLKVAINGFGRIGRNFLRC-WHGRKDSP-LEVVAINDT-GGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHR 672
            K++V INGFGR+GR  LR  W    D P LE V IN+  GG   A+HLLK+DS  G +  +V+  G + + +DG  +       P ++PW D G+DLV+E +G F        + + G +KV++ AP K +    V+GVN   Y+P++  +++ ASCTTNCLAP VKV+ +  GI  G +TT H  T  Q L+DA H+
Sbjct:    2 KVRVGINGFGRMGRLALRAAW----DWPELEFVHINEIKGGAVAAAHLLKFDSVHGRWTPEVEAEG-ERVLIDGTPLSFSEYGKPDDVPWEDFGVDLVLECSGKFRTPATLDPYFKRGVQKVIVAAPVKEEALNIVMGVNDYLYEPEKHHLLTAASCTTNCLAPVVKVIHEGLGIKHGIITTIHDNTNTQTLVDAPHK 194          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.204e-31
Identity = 67/149 (44.97%), Postives = 95/149 (63.76%), Query Frame = 1
Query:  217 SHLLKYDSTLGIFEA-DVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLD 660
            +++ KYD+  G ++  +VK   +  +    K + V   RNP  +PW   G + V+E TGVF D++ A  HI+ GAKKV+I+AP K D P +V GVN   YK D  I+SNASCTTNC AP  KV++ +FGI++G MTT H+ T  Q+ +D
Sbjct:   12 TYMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVAVFGCRNPEEIPWAAAGAEYVVESTGVFTDKDKAAAHIKGGAKKVIISAPSK-DAPMFVCGVNEKEYKSDIDIVSNASCTTNCPAPLAKVINDRFGIVEGLMTTVHAMTATQKTVD 159          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P_HELPJ (Glyceraldehyde-3-phosphate dehydrogenase OS=Helicobacter pylori J99 GN=gapA PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.754e-30
Identity = 83/200 (41.50%), Postives = 122/200 (61.00%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRCWHGRKDS--PLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDL-GIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDI-----PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH 669
            +K+ INGFGRIGR  LR    R D+   LEV+ IND    +  ++LL++DST G+   +V+         +GK+I + S   PV     DL G+ ++IE +G F++ +    ++  GAKKVL++AP  G+      PT V GVN   Y+ ++ I+SNASCTTN +AP   +LD+ F I +G +TT HSYT DQ+L+D +H
Sbjct:    1 MKIFINGFGRIGRCVLRAILERNDTNPQLEVIGINDPANWEILAYLLEHDSTHGLLNKEVR-------YSNGKLI-IGSLEIPVFNSIKDLKGVGVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFLYQ-NQAIVSNASCTTNAIAPICAILDKAFSIKEGMLTTIHSYTSDQKLIDLAH 191          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P_HELPY (Glyceraldehyde-3-phosphate dehydrogenase OS=Helicobacter pylori GN=gapA PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.871e-29
Identity = 80/200 (40.00%), Postives = 118/200 (59.00%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRCWHGRKDS--PLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDL-GIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDI-----PTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH 669
            +K+ INGFGRIGR  LR    R D+   LEV+ IND    +  ++LL++DS  G+   +V+             + + S   PV     DL G+D++IE +G F++ +    ++  GAKKVL++AP  G+      PT V GVN   Y+ ++ I+SNASCTTN +AP   +LD+ F I +G +TT HSYT DQ+L+D +H
Sbjct:    1 MKIFINGFGRIGRCVLRAILERNDTNPKLEVIGINDPANWEILAYLLEHDSVHGLLPKEVR--------YSNYKLIIGSLEIPVFNSIKDLKGVDVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFCYQ-NQAIVSNASCTTNAIAPICAILDKAFKIKEGMLTTIHSYTSDQKLIDLAH 191          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P_MELGA (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Meleagris gallopavo GN=GAPDH PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.416e-22
Identity = 49/98 (50.00%), Postives = 66/98 (67.35%), Query Frame = 1
Query:  367 DLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLD 660
            + V+E TGVF   E AG H++ GAK+V+I+AP   D P +V+GVN + Y     I+SNA CTTNCLAP  KV+   FGI++G MTT H+ T  Q+ +D
Sbjct:    2 EYVVESTGVFTTMEKAGAHLKGGAKRVIISAPS-ADAPMFVMGVNHEKYDKSLKIVSNALCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVD 98          
The following BLAST results are available for this feature:
BLAST of CF417399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P_TREPA2.760e-3242.79Glyceraldehyde-3-phosphate dehydrogenase OS=Trepon... [more]
E4PD_PSYIN3.604e-3239.18D-erythrose-4-phosphate dehydrogenase OS=Psychromo... [more]
G3P3_ANAVT1.789e-3140.31Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
G3P3_ANASP1.789e-3141.41Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
G3PC_HORVU5.204e-3144.97Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_HELPJ5.754e-3041.50Glyceraldehyde-3-phosphate dehydrogenase OS=Helico... [more]
G3P_HELPY4.871e-2940.00Glyceraldehyde-3-phosphate dehydrogenase OS=Helico... [more]
G3P_MELGA4.416e-2250.00Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-329 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417399 ID=CF417399; Name=CF417399; organism=Citrus sinensis; type=EST; length=672bp
TCTTCTGATGACTTCCATTCAGTCATTGCTCTCCAGACCTCTGCTTTAGG
AAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAAGCTGAAGG
TTGCAATCAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGAGGTGCTGG
CACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGCCATCAATGACACCGG
AGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACGACTCCACCCTTGGCA
TCTTTGAAGCCGATGTTAAACCAGTTGGTACTGATGGCATCTCTGTTGAT
GGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTG
GGGGGACTTGGGCATCGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAG
ACAGAGAGGGTGCGGGCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTT
ATTACAGCCCCCGGCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAA
TGCGGATGCTTACAAGCCAGATGAGCCCATCATCAGCAATGCTTCTTGCA
CAACCAACTGCCTTGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGC
ATTATCAAGGGAACCATGACCACCACACACTCGTACACTGGCGACCAAAG
GCTACTCGATGCTAGCCACCGT
back to top