CF417399

Overview
NameCF417399
Unique NameCF417399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3PC_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Leishmania mexicana GN=GAPC PE=3 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 5.727e-46
Identity = 93/189 (49.21%), Postives = 132/189 (69.84%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLD 660
            +KV INGFGRIGR   R    R D  +E+V IND    +  ++ LKYDST G F+  V+ +    + V+GK I+V S R+P NL W ++G+++V+E TG+F+ +E A KHI+AGA++V++T P K D P +V+GVN   YK  +PIISNASCTTNCLAP  KV+++K+GI++G MTT H+ T  Q+ +D
Sbjct:    2 VKVGINGFGRIGRVVFRAAQMRPD--IEIVGINDLLDAEYMAYSLKYDSTHGRFDGTVEVI-KGALVVNGKSIRVTSERDPANLKWDEIGVEVVVESTGLFLTQETAHKHIEAGARRVVMTGPPKDDTPMFVMGVNHTTYK-GQPIISNASCTTNCLAPLAKVVNEKYGIVEGLMTTVHATTATQKTVD 186          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P1_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena sp. (strain PCC 7120) GN=gap1 PE=1 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 5.727e-46
Identity = 101/194 (52.06%), Postives = 126/194 (64.95%), Query Frame = 1
Query:   88 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD--IPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLD 660
            AKLKV INGFGRIGR  LR   G  +  +E V IND       ++LLKYDST G   + V+    DGI +DG  I  VS RNP  LPWG LG D V+E TG+F D EGA KH+QAGA++V+I+AP K    + T +VGVN D + P +  I+SNASCTTNCLAP  KV++  FG+ +G MTT H+ T  Q  +D
Sbjct:    2 AKLKVGINGFGRIGRLVLRA--GINNPNIEFVGINDLVPPDNLAYLLKYDSTHGRLRSQVE-TKDDGIVIDGHFIPCVSVRNPAELPWGKLGADYVVESTGLFTDSEGASKHLQAGARRVIISAPTKDPDRVRTLLVGVNHDLFDPSKDLIVSNASCTTNCLAPIAKVINDNFGLTEGLMTTVHAMTATQPTVD 192          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.480e-46
Identity = 94/190 (49.47%), Postives = 127/190 (66.84%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLD 660
            +KV INGFGRIGR   R  +  +   +E+VA+ND       A+++LKYDST G F+ DVK    +G+ VDGK ++    R+P N+PW + G D VIE TGVF   E A  H++ GAKKV+I+AP   D P +V+GVN + YK D  ++SNASCTTNCLAP  KV++  FG+++G MTT HSYT  Q+ +D
Sbjct:    3 VKVGINGFGRIGRIVFR--NAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFKGDVK-FSENGLDVDGKHVRFYQERDPANIPWAETGADYVIESTGVFTTTEKASAHLKGGAKKVIISAPS-ADAPMFVMGVNNETYKSDIKVLSNASCTTNCLAPLAKVVNDNFGLVEGLMTTVHSYTATQKTVD 188          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.480e-46
Identity = 94/190 (49.47%), Postives = 127/190 (66.84%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLD 660
            +KV INGFGRIGR   R  +  +   +E+VA+ND       A+++LKYDST G F+ DVK    +G+ VDGK ++    R+P N+PW + G D VIE TGVF   E A  H++ GAKKV+I+AP   D P +V+GVN + YK D  ++SNASCTTNCLAP  KV++  FG+++G MTT HSYT  Q+ +D
Sbjct:    3 VKVGINGFGRIGRIVFR--NAVEHPEVEIVAVNDPFIETHYAAYMLKYDSTHGRFKGDVK-FSDNGLDVDGKHVRFYQERDPANIPWAETGADYVIESTGVFTTTEKASAHLKGGAKKVIISAPS-ADAPMFVMGVNNETYKSDIKVLSNASCTTNCLAPLAKVVNDNFGLVEGLMTTVHSYTATQKTVD 188          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P_BUCAP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=gapA PE=3 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 7.480e-46
Identity = 97/193 (50.26%), Postives = 134/193 (69.43%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHR 672
            +K+ INGFGRIGR   R    R++  +EVVAIND    K  +++LKYDST G F+ D++ V  + + ++GK I++ S ++P  L W  L ID+VIE TG+F+ ++ A KHI +GAKKV+IT P K DIP +V G N D YK  E I+SNASCTTNCLAP  KV+D  FGII+G MTT H+ T  Q+++D++ +
Sbjct:    3 IKIGINGFGRIGRVLFRLAQEREN--IEVVAINDLLDPKYIAYMLKYDSTHGNFKKDIE-VKNNNLIINGKKIRITSIKDPEKLMWDKLLIDVVIESTGLFLTKDTAYKHILSGAKKVVITGPSKDDIPMFVRGANFDKYK-GEKIVSNASCTTNCLAPLSKVIDDHFGIIEGLMTTVHASTATQKIVDSASK 191          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.842e-45
Identity = 102/193 (52.85%), Postives = 127/193 (65.80%), Query Frame = 1
Query:  100 VAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDA-SHR 672
            V INGFGRIGR  LR    R D  + V+AIND       A+++ KYDST G F+  V   G   + ++GK I+V   R+P N+PWG  G+D V++ TGVF   EGA KHI AGAKKV+ITAP K D P +VVGVN + Y PD  I+SNASCTTNCLAP  KV++  FGI +G MTT HS T  Q+ +D  SH+
Sbjct:    5 VGINGFGRIGRLVLRIALSRDD--INVIAINDPFIAPDYAAYMFKYDSTHGKFKGTVTHEGKY-LVINGKKIEVFQERDPANIPWGKEGVDYVLDSTGVFTTIEGAQKHIDAGAKKVIITAPSK-DAPMFVVGVNHEEYTPDIKILSNASCTTNCLAPLAKVINDIFGIEEGLMTTVHSITATQKTVDGPSHK 193          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P2_RHOSH (Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhodobacter sphaeroides GN=gapB PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.842e-45
Identity = 99/193 (51.30%), Postives = 123/193 (63.73%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHR 672
            ++VAINGFGRIGRN LR       + +EVVAIND G V+  +HLL++DS  G F A V   G D I V    I+V + RNP  LPW   G+D+ +E TG+F  +E A  H+Q GAK+VL++AP  G   T V GVN      D+ ++SNASCTTNCL+P  KVL    GI KG MTT HSYTGDQ  LD  H+
Sbjct:    3 IRVAINGFGRIGRNVLRAIVESGRTDIEVVAINDLGQVETNAHLLRFDSVHGRFPAKVTS-GDDWIDVGRGPIKVTAIRNPAELPWA--GVDMAMECTGIFTTKEKAAAHLQNGAKRVLVSAPCDGADRTIVYGVNHATLTADDLVVSNASCTTNCLSPVAKVLHDAIGIAKGFMTTIHSYTGDQPTLDTMHK 192          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P_STRAU (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces aureofaciens GN=gap PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.712e-45
Identity = 101/195 (51.79%), Postives = 123/195 (63.08%), Query Frame = 1
Query:   97 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDG--ISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHR 672
            ++AINGFGRIGRN LR    R DS L+VVA+ND       + LL YD+T G      +PV  +G  + VDG+ I V + R P NLPW +LG+D+V+E TG F   + A  H+ AGAKKVL++AP  G   T   GVN DAY PD   I+SNASCTTN LAP  KVLD   GI  G MTT H+YT +Q L D  HR
Sbjct:    3 RIAINGFGRIGRNVLRALLER-DSDLDVVAVNDLTEPATLARLLAYDTTSGRLG---RPVTVEGNVLVVDGRRITVTAEREPANLPWAELGVDIVLEATGRFTSAKAARAHLDAGAKKVLVSAPADGADITLAFGVNTDAYDPDLHTIVSNASCTTNALAPLAKVLDDLAGIEHGFMTTVHAYTQEQNLQDGPHR 193          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P1_STAES (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.712e-45
Identity = 98/193 (50.78%), Postives = 122/193 (63.21%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHR 672
            +KVAINGFGRIGR   R    +    LEVVA+ND       +HLLKYD+  G F  +V+ +   G  V+GK I+     +   LPWGDL ID+V+E TG + D+E A  HI AGAKKVLI+AP KGD+ T V   N D     E ++S ASCTTN LAP  KVL  +FG+++G MTT H+YTGDQ   DA HR
Sbjct:    3 IKVAINGFGRIGRLAFR--RIQDVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVI-EGGFRVNGKEIKSFDEPDAGKLPWGDLDIDVVLECTGFYTDKEKAQAHIDAGAKKVLISAPAKGDVKTIVFNTNHDTLDGSETVVSGASCTTNSLAPVAKVLSDEFGLVEGFMTTIHAYTGDQNTQDAPHR 192          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P1_STAEQ (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.712e-45
Identity = 98/193 (50.78%), Postives = 122/193 (63.21%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHR 672
            +KVAINGFGRIGR   R    +    LEVVA+ND       +HLLKYD+  G F  +V+ +   G  V+GK I+     +   LPWGDL ID+V+E TG + D+E A  HI AGAKKVLI+AP KGD+ T V   N D     E ++S ASCTTN LAP  KVL  +FG+++G MTT H+YTGDQ   DA HR
Sbjct:    3 IKVAINGFGRIGRLAFR--RIQDVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVI-EGGFRVNGKEIKSFDEPDAGKLPWGDLDIDVVLECTGFYTDKEKAQAHIDAGAKKVLISAPAKGDVKTIVFNTNHDTLDGSETVVSGASCTTNSLAPVAKVLSDEFGLVEGFMTTIHAYTGDQNTQDAPHR 192          
The following BLAST results are available for this feature:
BLAST of CF417399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3PC_LEIME5.727e-4649.21Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_ANASP5.727e-4652.06Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P_COCP77.480e-4649.47Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P_COCIM7.480e-4649.47Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P_BUCAP7.480e-4650.26Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P_PICAN2.842e-4552.85Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P2_RHOSH2.842e-4551.30Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhod... [more]
G3P_STRAU3.712e-4551.79Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P1_STAES3.712e-4550.78Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAEQ3.712e-4550.78Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-329 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417399 ID=CF417399; Name=CF417399; organism=Citrus sinensis; type=EST; length=672bp
TCTTCTGATGACTTCCATTCAGTCATTGCTCTCCAGACCTCTGCTTTAGG
AAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAAGCTGAAGG
TTGCAATCAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGAGGTGCTGG
CACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGCCATCAATGACACCGG
AGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACGACTCCACCCTTGGCA
TCTTTGAAGCCGATGTTAAACCAGTTGGTACTGATGGCATCTCTGTTGAT
GGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTG
GGGGGACTTGGGCATCGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAG
ACAGAGAGGGTGCGGGCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTT
ATTACAGCCCCCGGCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAA
TGCGGATGCTTACAAGCCAGATGAGCCCATCATCAGCAATGCTTCTTGCA
CAACCAACTGCCTTGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGC
ATTATCAAGGGAACCATGACCACCACACACTCGTACACTGGCGACCAAAG
GCTACTCGATGCTAGCCACCGT
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