CF417399

Overview
NameCF417399
Unique NameCF417399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.143e-44
Identity = 92/189 (48.68%), Postives = 125/189 (66.14%), Query Frame = 1
Query:   88 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQR 651
            A +KV INGFGRIGR   R  +  +   +E+VA+ND     K A+++LKYDST GIF  ++K  G D + ++GK ++  + R+P  +PW + G D V+E TGVF   + A  H+Q GAKKV+I+AP   D P YV+ VN  +Y     +ISNASCTTNCLAP  KV++ KFGI++G MTT HSYT  Q+
Sbjct:    2 APIKVGINGFGRIGRIVFR--NAIEHPEVEIVAVNDPFIETKYAAYMLKYDSTHGIFNGEIKQEGND-LVINGKTVKFYTERDPAAIPWKETGADYVVESTGVFTTTDKAKAHLQGGAKKVIISAPS-ADAPMYVMVVNEKSYDGSADVISNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSYTATQK 186          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.143e-44
Identity = 94/197 (47.72%), Postives = 129/197 (65.48%), Query Frame = 1
Query:   76 VAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEA-DVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLD 660
            +++  K+K+ INGFGRIGR   R    R D  +E+VA+ND        +++ KYDS  G ++  +VK   ++ +    K + V   RNP  +PWG+ G++ V+E TGVF D+E A  HI+ GAKKV+ITAP K D P +VVGVN   YKPD  I+SNASCTTNCLAP  KV++ +FGI++G MTT HS T  Q+ +D
Sbjct:    1 MSSTGKIKIGINGFGRIGRLVARVALLRDD--IELVAVNDPFISTDYMTYMFKYDSVHGQWKKHEVKVKDSNTLLFGEKAVTVFGCRNPEEIPWGETGVEYVVESTGVFTDKEKAAAHIKGGAKKVVITAPSK-DAPMFVVGVNEHEYKPDLAIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVD 194          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P1_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces marxianus GN=GAP1 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.143e-44
Identity = 98/195 (50.26%), Postives = 133/195 (68.21%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDA-SHR 672
            + +AINGFGRIGR  LR    RK+  ++VVAIND    V  A+++ KYDST G ++ +V   G++ I ++GK + V   ++P  LPWG LG+D+ ++ TGVF + + A KHI AGAKKV+ITAP K   P +VVGVN D Y   E I+SNASCTTNCLAP  K+++ +FGI +G MTT HS T  Q+ +D  SH+
Sbjct:    2 VSIAINGFGRIGRLVLRIALERKN--IDVVAINDPFISVDYAAYMFKYDSTHGKYKGEVSHDGSNLI-INGKKVAVFQEKDPATLPWGKLGVDIAVDSTGVFKELDSAQKHIDAGAKKVVITAPSK-TAPMFVVGVNEDKYN-GEKIVSNASCTTNCLAPIAKIINDEFGIEEGLMTTVHSITATQKTVDGPSHK 191          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P_RALSO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ralstonia solanacearum GN=gapA PE=3 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 4.105e-44
Identity = 96/190 (50.53%), Postives = 128/190 (67.37%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRCWHGR-KDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLD 660
            +K+ INGFGRIGR   R      KD  +EVVAIND       +++LKYDS  G F+ +V   G   + V+GK I++ + ++P  L WG++G D+V+E TG+F+ +EGA KHI AGAKKV+++AP K D P +V GVN   YK  E IISNASCTTNCLAP  KVL+ K+GI +G MTT H+ T  Q+ +D
Sbjct:    3 IKIGINGFGRIGRMVFRAAIANFKD--IEVVAINDLLEPDYLAYMLKYDSVHGRFDGEVSVDGNT-LVVNGKKIRLTAVKDPAELKWGEVGADVVVESTGIFLTKEGAQKHIDAGAKKVIMSAPSKDDTPMFVYGVNHGTYK-GEAIISNASCTTNCLAPVAKVLNDKWGIKRGLMTTVHAATATQKTVD 188          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P_KLEPN (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Klebsiella pneumoniae GN=gap PE=3 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 5.361e-44
Identity = 94/190 (49.47%), Postives = 128/190 (67.37%), Query Frame = 1
Query:  106 INGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDA-SHR 672
            INGFGRIGR   R    +K S +E+VAIND    +  +++LKYDST G F+  V+ V    + V+GK I+V + R+P NL W ++G+D+V E TG+F+  E A KHI AGAKKV++T P K + P +V G N DAY   + I+SNASCTTNCLAP  KV++  FGI++G MTT H+ T  Q+ +D  SH+
Sbjct:    1 INGFGRIGRIVFRA--AQKRSDIEIVAINDLLDAEYMAYMLKYDSTHGRFDGTVE-VKDGHLVVNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVRGANFDAY-AGQDIVSNASCTTNCLAPLAKVINDNFGIVEGLMTTVHATTATQKTVDGPSHK 186          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P_CHLMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia muridarum GN=gap PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.001e-44
Identity = 95/195 (48.72%), Postives = 133/195 (68.21%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDG-KVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP-DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHR 672
            +++ INGFGRIGR  LR    ++++P+EVVAIND       ++L KYDST G F +      +DG  V G + I+ ++ ++   LPW DL +D+V+E TG+FV+++ A KH+ +GAK+VLITAP KGD+PT+V+GVN   + P ++ IISNASCTTNCLAP  KVL   FGI +G MTT H+ T  Q ++D   R
Sbjct:    1 MRIVINGFGRIGRLVLRQIL-KRNAPIEVVAINDLVSGDLLTYLFKYDSTHGSFASQA--TFSDGCLVVGERKIRFLAEKDVQKLPWKDLDVDVVVESTGLFVNKDDAAKHLDSGAKRVLITAPAKGDVPTFVMGVNHQKFDPANDVIISNASCTTNCLAPLAKVLLDNFGIEEGLMTTVHAATATQSVVDGPSR 192          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P_MYCGE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoplasma genitalium GN=gapA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.144e-44
Identity = 100/198 (50.51%), Postives = 126/198 (63.64%), Query Frame = 1
Query:   79 AAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-IPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH 669
            A    +KVAINGFGRIGR   R    + +  +EVVAIND    +  +HLLKYDS  G  +  +  V  + + +D K + V S ++P NLPW +  ID+VIE TG FV  EGA  H++AGAK+V+I+AP K   I T V  VN      D+ IIS ASCTTNCLAP V VL++ FGI+ GTM T H+YT DQRL DA H
Sbjct:    3 AKNRTIKVAINGFGRIGRLVFRSLLSKAN--VEVVAINDLTQPEVLAHLLKYDSAHGELKRKIT-VKQNILQIDRKKVYVFSEKDPQNLPWDEHDIDVVIESTGRFVSEEGASLHLKAGAKRVIISAPAKEKTIRTVVYNVNHKTISSDDKIISAASCTTNCLAPLVHVLEKNFGIVYGTMLTVHAYTADQRLQDAPH 197          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P2_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Candida glabrata GN=GPD2 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.144e-44
Identity = 101/195 (51.79%), Postives = 126/195 (64.62%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDA-SHR 672
            +++AINGFGRIGR  LR    R  S +EVVA+ND       A+++ KYDST G +  +V       I +DGK I V   R+P NLPWG   ID+ I+ TGVF + + A KHI AGAKKV+ITAP     P +VVGVN D Y  D  I+SNASCTTNCLAP  KV+D+ FGI +G MTT HS T  Q+ +D  SH+
Sbjct:    2 VRIAINGFGRIGRLVLRVALSR--SNIEVVAVNDPFITTDYAAYMFKYDSTHGRYAGEVTH-DDKHIIIDGKKIAVHQERDPANLPWGSENIDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSS-TAPMFVVGVNEDKYTSDLKIVSNASCTTNCLAPLAKVIDEAFGIEEGLMTTVHSLTATQKTVDGPSHK 192          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 9.144e-44
Identity = 99/195 (50.77%), Postives = 127/195 (65.13%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDA-SHR 672
            +++AINGFGRIGR  LR    RKD  +EVVA+ND       A++++KYDST G ++  V       I +DG  I     R+P NLPWG L ID+ ++ TGVF + + A KHI AGAKKV+ITAP     P +VVGVN   Y PD+ I+SNASCTTNCLAP  KV++  FGI +G MTT HS T  Q+ +D  SH+
Sbjct:    2 IRIAINGFGRIGRLVLRLALQRKD--IEVVAVNDPFISNDYAAYMVKYDSTHGRYKGTVSH-DDKHIIIDGVKIATYQERDPANLPWGSLKIDVAVDSTGVFKELDTAQKHIDAGAKKVVITAPSSS-APMFVVGVNHTKYTPDKKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSMTATQKTVDGPSHK 192          
BLAST of CF417399 vs. ExPASy Swiss-Prot
Match: E4PD_PSEHT (D-erythrose-4-phosphate dehydrogenase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=epd PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.194e-43
Identity = 93/194 (47.94%), Postives = 124/194 (63.92%), Query Frame = 1
Query:   94 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASH 669
            +K+AINGFGRIGRN +R  +     + +++VAIN+    +  +HLLKYD++ G F   VK +G D ISV G  I +    NP  LPW  LG+D+V+E TGV+  RE A  H+ AGAKKVL + P   D+  T V G+N D  KP+  I+SN SCTTNC+ P +KVLD  FGI  G +TT H+   DQ ++DA H
Sbjct:    3 IKLAINGFGRIGRNIVRALYESGLSNEIKIVAINELADPEAIAHLLKYDTSHGRFFFPVK-LGEDTISVAGDAIALFCEPNPAELPWKTLGVDVVLECTGVYHSREHAQLHLTAGAKKVLFSHPADNDVDATIVYGINDDELKPEHTIVSNGSCTTNCVVPVIKVLDDAFGIESGAITTIHASMNDQPVIDAYH 195          
The following BLAST results are available for this feature:
BLAST of CF417399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P_COLGL3.143e-4448.68Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3PC_GINBI3.143e-4447.72Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_KLUMA3.143e-4450.26Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_RALSO4.105e-4450.53Glyceraldehyde-3-phosphate dehydrogenase OS=Ralsto... [more]
G3P_KLEPN5.361e-4449.47Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_CHLMU7.001e-4448.72Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P_MYCGE9.144e-4450.51Glyceraldehyde-3-phosphate dehydrogenase OS=Mycopl... [more]
G3P2_CANGA9.144e-4451.79Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Cand... [more]
G3P1_YEAST9.144e-4450.77Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
E4PD_PSEHT1.194e-4347.94D-erythrose-4-phosphate dehydrogenase OS=Pseudoalt... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-329 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417399 ID=CF417399; Name=CF417399; organism=Citrus sinensis; type=EST; length=672bp
TCTTCTGATGACTTCCATTCAGTCATTGCTCTCCAGACCTCTGCTTTAGG
AAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAAGCTGAAGG
TTGCAATCAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGAGGTGCTGG
CACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGCCATCAATGACACCGG
AGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACGACTCCACCCTTGGCA
TCTTTGAAGCCGATGTTAAACCAGTTGGTACTGATGGCATCTCTGTTGAT
GGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTG
GGGGGACTTGGGCATCGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAG
ACAGAGAGGGTGCGGGCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTT
ATTACAGCCCCCGGCAAGGGTGACATCCCAACCTACGTTGTTGGTGTCAA
TGCGGATGCTTACAAGCCAGATGAGCCCATCATCAGCAATGCTTCTTGCA
CAACCAACTGCCTTGCCCCATTCGTCAAGGTTCTTGACCAGAAGTTTGGC
ATTATCAAGGGAACCATGACCACCACACACTCGTACACTGGCGACCAAAG
GCTACTCGATGCTAGCCACCGT
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