CF417400

Overview
NameCF417400
Unique NameCF417400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length456
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9291 contig Csv1_Contig9291:977..1432. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.457e-27
Identity = 60/81 (74.07%), Postives = 65/81 (80.25%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 244
            ILDQVE           ATR+VLSEYGNMSSACVLFILDEMRKKS ++   TTGEGLDWGVLFGFGPGLT+ETVVLHSV +
Sbjct:  205 ILDQVEQKLGLKPEKMKATREVLSEYGNMSSACVLFILDEMRKKSAQQGLKTTGEGLDWGVLFGFGPGLTIETVVLHSVAL 285          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHSY_PERFR (Chalcone synthase OS=Perilla frutescens GN=CHS PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.902e-27
Identity = 60/81 (74.07%), Postives = 65/81 (80.25%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 244
            ILDQVE+          +TR VL EYGNMSSACVLFILDEMRK S +E  ++TGEGLDWGVLFGFGPGLTVETVVLHSVPI
Sbjct:  309 ILDQVEAKLGLKPEKLRSTRHVLGEYGNMSSACVLFILDEMRKSSAKEGMSSTGEGLDWGVLFGFGPGLTVETVVLHSVPI 389          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHS9_MEDSA (Chalcone synthase 9 OS=Medicago sativa GN=CHS9 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.902e-27
Identity = 61/81 (75.31%), Postives = 64/81 (79.01%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 244
            ILDQVE           ATR+VLSEYGNMSSACVLFILDEMRKKS +    TTGEGLDWGVLFGFGPGLT+ETVVLHSV I
Sbjct:  309 ILDQVEQKLGLKPEKMKATREVLSEYGNMSSACVLFILDEMRKKSAQAGLKTTGEGLDWGVLFGFGPGLTIETVVLHSVAI 389          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHS3_MEDSA (Chalcone synthase 4-1 OS=Medicago sativa GN=CHS4-1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.902e-27
Identity = 61/81 (75.31%), Postives = 64/81 (79.01%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 244
            ILDQVE           ATR+VLSEYGNMSSACVLFILDEMRKKS +    TTGEGLDWGVLFGFGPGLT+ETVVLHSV I
Sbjct:  309 ILDQVEEKLGLKPEKMKATREVLSEYGNMSSACVLFILDEMRKKSAQAGLKTTGEGLDWGVLFGFGPGLTIETVVLHSVAI 389          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHSY_MATIN (Chalcone synthase OS=Matthiola incana GN=CHS PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.485e-27
Identity = 61/81 (75.31%), Postives = 65/81 (80.25%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 244
            ILDQVE           ATR VLSEYGNMSSACVLFILDEMRKKS ++  ATTGEGL+WGVLFGFGPGLTVETVVL SVP+
Sbjct:  314 ILDQVEIKLGLKAEKMRATRHVLSEYGNMSSACVLFILDEMRKKSAQDGVATTGEGLEWGVLFGFGPGLTVETVVLRSVPL 394          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHSY_CARAN (Chalcone synthase OS=Cardamine amara GN=CHS PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.485e-27
Identity = 60/81 (74.07%), Postives = 65/81 (80.25%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 244
            ILDQVE           ATR V+ EYGNMSSACVLFILDEMRKKS ++  ATTGEGL+WGVLFGFGPGLTVETVVLHSVP+
Sbjct:  315 ILDQVEIKLGLKEEKMRATRHVMREYGNMSSACVLFILDEMRKKSAKDGVATTGEGLEWGVLFGFGPGLTVETVVLHSVPL 395          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHS6_TRISU (Chalcone synthase 6 OS=Trifolium subterraneum GN=CHS6 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.485e-27
Identity = 61/81 (75.31%), Postives = 63/81 (77.78%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 244
            ILDQVE           ATR VLSEYGNMSSACVLFILDEMRKKS +    TTGEGLDWGVLFGFGPGLT+ETVVLHSV I
Sbjct:  309 ILDQVEQKLALKPEKMKATRDVLSEYGNMSSACVLFILDEMRKKSAQNGLKTTGEGLDWGVLFGFGPGLTIETVVLHSVAI 389          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHS5_TRISU (Chalcone synthase 5 OS=Trifolium subterraneum GN=CHS5 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.485e-27
Identity = 61/81 (75.31%), Postives = 63/81 (77.78%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 244
            ILDQVE           ATR VLSEYGNMSSACVLFILDEMRKKS +    TTGEGLDWGVLFGFGPGLT+ETVVLHSV I
Sbjct:  309 ILDQVEQKLALKPEKMKATRDVLSEYGNMSSACVLFILDEMRKKSAQNGLKTTGEGLDWGVLFGFGPGLTIETVVLHSVAI 389          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHS1_GERHY (Chalcone synthase 1 OS=Gerbera hybrida GN=CHS1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.485e-27
Identity = 61/80 (76.25%), Postives = 63/80 (78.75%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVP 241
            ILDQVE           ATR VLSEYGNMSSACVLFI+DEMRKKS E    TTGEGL+WGVLFGFGPGLTVETVVLHSVP
Sbjct:  312 ILDQVELKLGLKEEKLRATRHVLSEYGNMSSACVLFIIDEMRKKSSENGAGTTGEGLEWGVLFGFGPGLTVETVVLHSVP 391          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHS7_IPOBA (Chalcone synthase DIII OS=Ipomoea batatas GN=CHS-DIII PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.245e-27
Identity = 61/82 (74.39%), Postives = 63/82 (76.83%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPIK 247
            ILDQVE           ATR VLSEYGNMSSACVLFILDEMRK S      TTGEGL+WGVLFGFGPGLT+ETVVLHSVPIK
Sbjct:  308 ILDQVEDKLGLKPEKLRATRHVLSEYGNMSSACVLFILDEMRKASSNAGLGTTGEGLEWGVLFGFGPGLTIETVVLHSVPIK 389          
The following BLAST results are available for this feature:
BLAST of CF417400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
CHS6_MEDSA1.457e-2774.07Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]
CHSY_PERFR1.902e-2774.07Chalcone synthase OS=Perilla frutescens GN=CHS PE=... [more]
CHS9_MEDSA1.902e-2775.31Chalcone synthase 9 OS=Medicago sativa GN=CHS9 PE=... [more]
CHS3_MEDSA1.902e-2775.31Chalcone synthase 4-1 OS=Medicago sativa GN=CHS4-1... [more]
CHSY_MATIN2.485e-2775.31Chalcone synthase OS=Matthiola incana GN=CHS PE=2 ... [more]
CHSY_CARAN2.485e-2774.07Chalcone synthase OS=Cardamine amara GN=CHS PE=3 S... [more]
CHS6_TRISU2.485e-2775.31Chalcone synthase 6 OS=Trifolium subterraneum GN=C... [more]
CHS5_TRISU2.485e-2775.31Chalcone synthase 5 OS=Trifolium subterraneum GN=C... [more]
CHS1_GERHY2.485e-2776.25Chalcone synthase 1 OS=Gerbera hybrida GN=CHS1 PE=... [more]
CHS7_IPOBA3.245e-2774.39Chalcone synthase DIII OS=Ipomoea batatas GN=CHS-D... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-330 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417400 ID=CF417400; Name=CF417400; organism=Citrus sinensis; type=EST; length=456bp
AATTCTGGACCAAGTGGAGTCTAAACTGGGCCTCAAAGGGGAGAAGCTGA
AGGCCACACGTCAAGTGTTGAGTGAGTACGGTAACATGTCAAGCGCTTGT
GTCTTGTTCATCCTTGACGAGATGAGAAAGAAGTCTGTTGAGGAAGCGAA
AGCCACCACCGGCGAAGGGCTTGATTGGGGTGTGCTGTTCGGGTTCGGGC
CGGGGCTCACCGTCGAGACCGTTGTGCTGCACAGTGTCCCCATCAAAGCT
TGAAGTGAGAACTCCATCAGTATGTTTAGTAGTTCAGTAACTTTATGTTG
TATGCTTTCACAGTTGAGTTATTGGTTGATCGTGTGAAGGTTTAGTTTTG
TCAATTGAGTTTAAGGCATCGTGCCTTTTCTCTTATGACGTCACCAAACC
TGGGCAACGCTTTGTGTTTATGCATAAATTCTTGGGAATTTGAGAAAGTA
GTAAAT
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