CF417400

Overview
NameCF417400
Unique NameCF417400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length456
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9291 contig Csv1_Contig9291:977..1432. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHS5_SOYBN (Chalcone synthase 5 OS=Glycine max GN=CHS5 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.535e-27
Identity = 60/81 (74.07%), Postives = 64/81 (79.01%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 244
            ILDQVE+          ATR VLSEYGNMSSACVLFILD+MRKKS+E    TTGEGLDWGVLFGFGPGLTVETVVL SV +
Sbjct:  308 ILDQVEAKLGLKPEKMEATRHVLSEYGNMSSACVLFILDQMRKKSIENGLGTTGEGLDWGVLFGFGPGLTVETVVLRSVTV 388          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHS4_PEA (Chalcone synthase 4 OS=Pisum sativum GN=CHS4 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.535e-27
Identity = 59/81 (72.84%), Postives = 65/81 (80.25%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 244
            ILDQVE           ATR+VLSEYGNMSSACVLFILDEMR+KS++    TTGEGL+WGVLFGFGPGLT+ETVVLHSV I
Sbjct:  309 ILDQVEQKLALKPEKMKATREVLSEYGNMSSACVLFILDEMRRKSIQNGLKTTGEGLEWGVLFGFGPGLTIETVVLHSVVI 389          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHS3_SOYBN (Chalcone synthase 3 OS=Glycine max GN=CHS3 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.535e-27
Identity = 60/81 (74.07%), Postives = 64/81 (79.01%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 244
            ILDQVE+          ATR VLSEYGNMSSACVLFILD+MRKKS+E    TTGEGLDWGVLFGFGPGLTVETVVL SV +
Sbjct:  308 ILDQVEAKLGLKPEKMEATRHVLSEYGNMSSACVLFILDQMRKKSIENGLGTTGEGLDWGVLFGFGPGLTVETVVLRSVTV 388          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHS3_CAMSI (Chalcone synthase 3 OS=Camellia sinensis GN=CHS3 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.535e-27
Identity = 61/79 (77.22%), Postives = 63/79 (79.75%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 238
            ILDQVE           ATR VLSEYGNMSSACVLFILDEMRKKS EE   TTGEGL+WGVLFGFGPGLTVETVVLHS+
Sbjct:  309 ILDQVELKLGLKEEKLRATRHVLSEYGNMSSACVLFILDEMRKKSAEEGLKTTGEGLEWGVLFGFGPGLTVETVVLHSL 387          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHS2_SOYBN (Chalcone synthase 2 OS=Glycine max GN=CHS2 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.535e-27
Identity = 60/81 (74.07%), Postives = 64/81 (79.01%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 244
            ILDQVE+          ATR VLSEYGNMSSACVLFILD+MRKKS+E    TTGEGLDWGVLFGFGPGLTVETVVL SV +
Sbjct:  308 ILDQVEAKLGLKPEKMEATRHVLSEYGNMSSACVLFILDQMRKKSIENGLGTTGEGLDWGVLFGFGPGLTVETVVLRSVTV 388          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHSY_HYPAN (Chalcone synthase OS=Hypericum androsaemum PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 7.229e-27
Identity = 60/81 (74.07%), Postives = 65/81 (80.25%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 244
            ILDQVE+          ATR VLSEYGNMSSACVLFILDEMR+KS E+   TTGEG++WGVLFGFGPGLTVETVVLHSV I
Sbjct:  309 ILDQVEAKLSLKPEKLRATRHVLSEYGNMSSACVLFILDEMRRKSKEDGLKTTGEGIEWGVLFGFGPGLTVETVVLHSVAI 389          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHS2_SOLTU (Chalcone synthase 2 OS=Solanum tuberosum GN=CHS2 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 7.229e-27
Identity = 61/79 (77.22%), Postives = 64/79 (81.01%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 238
            ILDQVE           ATRQVLS+YGNMSSACVLFILDEMRK S +E  +TTGEGLDWGVLFGFGPGLTVETVVLHSV
Sbjct:  309 ILDQVELKLGLKPEKLQATRQVLSDYGNMSSACVLFILDEMRKASSKEGLSTTGEGLDWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHS2_SOLLC (Chalcone synthase 2 OS=Solanum lycopersicum GN=CHS2 PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 7.229e-27
Identity = 61/79 (77.22%), Postives = 64/79 (81.01%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSV 238
            ILDQVE           ATRQVLS+YGNMSSACVLFILDEMRK S +E  +TTGEGLDWGVLFGFGPGLTVETVVLHSV
Sbjct:  309 ILDQVELKLSLKPEKLRATRQVLSDYGNMSSACVLFILDEMRKASSKEGLSTTGEGLDWGVLFGFGPGLTVETVVLHSV 387          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHS1_SOYBN (Chalcone synthase 1 OS=Glycine max GN=CHS1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 7.229e-27
Identity = 60/81 (74.07%), Postives = 64/81 (79.01%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 244
            ILDQVE+          ATR VLSEYGNMSSACVLFILD+MRKKS+E    TTGEGLDWGVLFGFGPGLTVETVVL SV +
Sbjct:  308 ILDQVEAKLGLKPEKMEATRHVLSEYGNMSSACVLFILDQMRKKSIENGLGTTGEGLDWGVLFGFGPGLTVETVVLRSVTL 388          
BLAST of CF417400 vs. ExPASy Swiss-Prot
Match: CHS1_PEA (Chalcone synthase 1 OS=Pisum sativum GN=CHS1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 7.229e-27
Identity = 59/81 (72.84%), Postives = 65/81 (80.25%), Query Frame = 2
Query:    2 ILDQVESXXXXXXXXXXATRQVLSEYGNMSSACVLFILDEMRKKSVEEAKATTGEGLDWGVLFGFGPGLTVETVVLHSVPI 244
            ILDQVE           ATR+VLSEYGNMSSACVLFILD+MRKKS ++   TTGEGL+WGVLFGFGPGLT+ETVVLHSV I
Sbjct:  309 ILDQVEQKLGLKPEKMRATREVLSEYGNMSSACVLFILDQMRKKSTQDGLNTTGEGLEWGVLFGFGPGLTIETVVLHSVAI 389          
The following BLAST results are available for this feature:
BLAST of CF417400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
CHS5_SOYBN5.535e-2774.07Chalcone synthase 5 OS=Glycine max GN=CHS5 PE=3 SV... [more]
CHS4_PEA5.535e-2772.84Chalcone synthase 4 OS=Pisum sativum GN=CHS4 PE=3 ... [more]
CHS3_SOYBN5.535e-2774.07Chalcone synthase 3 OS=Glycine max GN=CHS3 PE=3 SV... [more]
CHS3_CAMSI5.535e-2777.22Chalcone synthase 3 OS=Camellia sinensis GN=CHS3 P... [more]
CHS2_SOYBN5.535e-2774.07Chalcone synthase 2 OS=Glycine max GN=CHS2 PE=3 SV... [more]
CHSY_HYPAN7.229e-2774.07Chalcone synthase OS=Hypericum androsaemum PE=1 SV... [more]
CHS2_SOLTU7.229e-2777.22Chalcone synthase 2 OS=Solanum tuberosum GN=CHS2 P... [more]
CHS2_SOLLC7.229e-2777.22Chalcone synthase 2 OS=Solanum lycopersicum GN=CHS... [more]
CHS1_SOYBN7.229e-2774.07Chalcone synthase 1 OS=Glycine max GN=CHS1 PE=3 SV... [more]
CHS1_PEA7.229e-2772.84Chalcone synthase 1 OS=Pisum sativum GN=CHS1 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-330 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417400 ID=CF417400; Name=CF417400; organism=Citrus sinensis; type=EST; length=456bp
AATTCTGGACCAAGTGGAGTCTAAACTGGGCCTCAAAGGGGAGAAGCTGA
AGGCCACACGTCAAGTGTTGAGTGAGTACGGTAACATGTCAAGCGCTTGT
GTCTTGTTCATCCTTGACGAGATGAGAAAGAAGTCTGTTGAGGAAGCGAA
AGCCACCACCGGCGAAGGGCTTGATTGGGGTGTGCTGTTCGGGTTCGGGC
CGGGGCTCACCGTCGAGACCGTTGTGCTGCACAGTGTCCCCATCAAAGCT
TGAAGTGAGAACTCCATCAGTATGTTTAGTAGTTCAGTAACTTTATGTTG
TATGCTTTCACAGTTGAGTTATTGGTTGATCGTGTGAAGGTTTAGTTTTG
TCAATTGAGTTTAAGGCATCGTGCCTTTTCTCTTATGACGTCACCAAACC
TGGGCAACGCTTTGTGTTTATGCATAAATTCTTGGGAATTTGAGAAAGTA
GTAAAT
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