CF417403

Overview
NameCF417403
Unique NameCF417403
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417403 vs. ExPASy Swiss-Prot
Match: RS4E_PICTO (30S ribosomal protein S4e OS=Picrophilus torridus GN=rps4e PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.306e-18
Identity = 60/208 (28.85%), Postives = 104/208 (50.00%), Query Frame = 2
Query:   41 KRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDALGS 661
            K + AP+   + +    +A     G HK    +PL++ LR+ LK     RE+  IL    V+VDGKV  ++    GFMD +++  +  ++ + YD KG+  +     E    KL +V+   + + G   I+ +DG T+      IK  D++ + + + +I D +KF  GN V +TGG + G +  IK+ E    S E  +H+ +   +
Sbjct:    6 KIMMAPRKLKIARKSRFWAVNSLPGSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTV--SGNDYLVSYDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIATIKSIEIKSSSGENMVHMNEGFST 211          
BLAST of CF417403 vs. ExPASy Swiss-Prot
Match: RS4E_HALMA (30S ribosomal protein S4E OS=Haloarcula marismortui GN=rps4e PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 2.227e-18
Identity = 56/201 (27.86%), Postives = 100/201 (49.75%), Query Frame = 2
Query:   26 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT-IRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGS 625
            +  H KRL+ P  W +++    F  K  +GPH     +PL++VLR+ L YA   +E    L + +VL++GK  +D+  P G  D+++  +  E +R+     GR  L ++  + A+ KL K+ +      G   +  +DG T I   D    A D+I +  E+ ++    +++ G +V    G + G VG ++  +   GS
Sbjct:    1 MSNHQKRLSVPNSWPVERKTATFTVKAGAGPH-GESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAISDEERPVGMFDILAFTEREEYYRVFPGEGGRLALTAIDPDAAQSKLGKIVTKTHVSGGDVQLGLHDGETLIVEDDQTYDAGDSIVVGNEDGEVVAHFEYEEGALVTAVDGAHAGEVGEVEEIQVTPGS 200          
BLAST of CF417403 vs. ExPASy Swiss-Prot
Match: RS4E_HALLT (30S ribosomal protein S4e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps4e PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.227e-18
Identity = 56/201 (27.86%), Postives = 98/201 (48.76%), Query Frame = 2
Query:   26 LKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRY-PDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGS 625
            + +H KRL  P  W +++    F  K  +GPH     +PL+++LR+ L Y  + +E    L    VLV+G   +D+  P G  D+++ P+  E FR+  D  GR  L S+ +E A  +L K+ +      G   +  +DG  +    D      D+I +D E   +    +++ G +V    G++ GR+G + + +   GS
Sbjct:    1 MTRHQKRLAVPNSWPVERKTNTFTVKAGAGPH-GEAGVPLVVLLRDVLGYVDSTKEARYALNNDSVLVNGDAISDEQRPIGMFDILAFPERGEFFRVFPDEGGRLALTSVDEEAAGSRLGKITNKSVVPGGDAQLTLHDGTNVLVDADTEYDTKDSIVVDNESKDVVAHFEYEEGALVTAVAGQHAGRIGEVADIDVTLGS 200          
The following BLAST results are available for this feature:
BLAST of CF417403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_PICTO1.306e-1828.8530S ribosomal protein S4e OS=Picrophilus torridus ... [more]
RS4E_HALMA2.227e-1827.8630S ribosomal protein S4E OS=Haloarcula marismortu... [more]
RS4E_HALLT2.227e-1827.8630S ribosomal protein S4e OS=Halorubrum lacusprofu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-333 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417403 ID=CF417403; Name=CF417403; organism=Citrus sinensis; type=EST; length=669bp
CAAACTCACAAAAATGGCTAGAGGATTGAAGAAGCACTTGAAGAGGCTCA
ATGCCCCTAAGCACTGGATGCTTGACAAGCTTGGTGGTGCATTTGCACCT
AAGCCATCATCTGGTCCCCACAAGTCAAGGGAATGCTTGCCATTGATCCT
TGTATTGCGAAACCGTTTGAAATATGCTCTCACATATCGTGAAGTTATTG
CTATTCTGATGCAACGACATGTTCTTGTTGATGGGAAGGTTAGGACAGAT
AAGACCTACCCTGCTGGTTTCATGGATGTTGTGTCAATTCCCAAGACCAA
CGAGAACTTCCGTCTCCTTTATGACACCAAGGGTCGCTTCCGTCTCCATT
CCCTCAGAGATGAGGAGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTC
CAGTTTGGCCAGAAAGGTATCCCATACATCAACACCTATGATGGGCGTAC
CATCCGCTACCCTGACCCACTCATCAAAGCCAATGATACCATCAAACTTG
ACTTAGAAGAGAACAAGATCACTGACTTCATCAAGTTTGATGTTGGGAAT
ATTGTCATGGTCACTGGGGGTAGAAACAGAGGTCGAGTTGGAATCATCAA
GAACAGGGAAAAGCATAAGGGAAGTTTTGAGACCATCCATATTCAAGATG
CCCTTGGGTCATGAGTTTG
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