CF417403

Overview
NameCF417403
Unique NameCF417403
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417403 vs. ExPASy Swiss-Prot
Match: RS4E_SULIN (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4e PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.716e-24
Identity = 65/193 (33.68%), Postives = 99/193 (51.30%), Query Frame = 2
Query:   35 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKN 604
            H+ R   P   ++ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L    I D      G+  +  GG+N G  G++KN
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKN 195          
BLAST of CF417403 vs. ExPASy Swiss-Prot
Match: RS4E_SULIM (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.716e-24
Identity = 65/193 (33.68%), Postives = 99/193 (51.30%), Query Frame = 2
Query:   35 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKN 604
            H+ R   P   ++ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L    I D      G+  +  GG+N G  G++KN
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKN 195          
BLAST of CF417403 vs. ExPASy Swiss-Prot
Match: RS4E_SULIL (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.716e-24
Identity = 65/193 (33.68%), Postives = 99/193 (51.30%), Query Frame = 2
Query:   35 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKN 604
            H+ R   P   ++ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L    I D      G+  +  GG+N G  G++KN
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKN 195          
BLAST of CF417403 vs. ExPASy Swiss-Prot
Match: RS4E_SULIK (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4e PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.716e-24
Identity = 65/193 (33.68%), Postives = 99/193 (51.30%), Query Frame = 2
Query:   35 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKN 604
            H+ R   P   ++ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L    I D      G+  +  GG+N G  G++KN
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKN 195          
BLAST of CF417403 vs. ExPASy Swiss-Prot
Match: RS4E_SULIA (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.27) GN=rps4e PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.716e-24
Identity = 65/193 (33.68%), Postives = 99/193 (51.30%), Query Frame = 2
Query:   35 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKN 604
            H+ R   P   ++ K    +  +P++GPH   + +PL +V+R+ LK A T RE   I+    VLVDGKVR D  YP G MD+VSIP  +  FR++ D     RL  +  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L    I D      G+  +  GG+N G  G++KN
Sbjct:    3 HITRFETPWFLVISKKQYKWTVRPNAGPHPIEKSIPLAVVIRDYLKLAETVREAKHIIFDGKVLVDGKVRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKN 195          
BLAST of CF417403 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAR (30S ribosomal protein S4e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps4e PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.716e-24
Identity = 73/190 (38.42%), Postives = 98/190 (51.58%), Query Frame = 2
Query:   35 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT-IRYPD--PLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG 592
            HL+R  AP  W +  K GG +  KPS GPH     LPL +V+R+ L+YA T RE   I+ + ++ VDG VR D  +P G MDV+ I  T E +R++ D    + L  +   EA  KL +V        G   ++ +DGR  I  PD    IK  DTI  DLE   I   I   +G + +VT G N G  G
Sbjct:    3 HLRRSLAPYWWPIPRKAGGVWVVKPSPGPHSFAYSLPLAIVIRDVLRYAKTLREARYIVSRGYIKVDGVVRKDYRFPVGLMDVIEIVPTGEVYRVVPDQDRYYNLLPIPSSEASLKLLRVEGKTTVNGGRLQLHFHDGRNLITSPDMGAKIKTFDTILYDLENKTIKTHIPMKLGVVAVVTHGSNVGFSG 192          
BLAST of CF417403 vs. ExPASy Swiss-Prot
Match: RS4E_PYRCJ (30S ribosomal protein S4e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.547e-24
Identity = 69/190 (36.32%), Postives = 100/190 (52.63%), Query Frame = 2
Query:   35 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG 592
            HL++  AP  W +  K GG +A +PS+GPH     LPL +V+R+ L+YA T RE   I+ + ++ VDG VR D  +P G MDVV I  T E +R++ D    + L  +   EA  K  +V        G   ++ +DGR +  P  +   IK  DT+  DLE   I   +   +G + +VT G N G VG
Sbjct:    3 HLRKSLAPYWWPIPRKAGGVWAVRPSTGPHSLEYSLPLAVVVRDVLRYAKTLREARYIISRGYIKVDGVVRKDYKFPIGLMDVVEIVPTGEIYRVVPDEAKYYDLKPIPSSEAALKPLRVEGKTAVSGGRIQLHFHDGRNLILPPDVGRQIKTFDTVVYDLENKAIKTHLPLRLGQLAVVTHGGNIGFVG 192          
BLAST of CF417403 vs. ExPASy Swiss-Prot
Match: RS4E_THENV (30S ribosomal protein S4e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4e PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.032e-23
Identity = 66/187 (35.29%), Postives = 99/187 (52.94%), Query Frame = 2
Query:   35 HLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPL---IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRG 583
            HL+R  +P  W +  K GG +A +PS GPH     +PL LV+R+ L+YA T RE   I+ + ++ VDG VR +  +P G MDVV I  T E +R++ D +  + L  +  EEA  KL +V      + G   ++ +DGR +  P      IK  D++  DL+   +   I   +G   +VT G N G
Sbjct:    3 HLRRTTSPYWWPIPRKAGGVWAVRPSPGPHSLAYSIPLALVIRDVLRYAKTLREARMIISRGYIKVDGVVRRNYKFPVGLMDVVEIVPTGEIYRVVPDERSYYALVPITSEEADLKLLRVEGKTAVKGGRLQVHFHDGRNLIMPAETARQIKTFDSVLYDLKARTVRSHIPMRLGVYAVVTHGGNVG 189          
BLAST of CF417403 vs. ExPASy Swiss-Prot
Match: RS4E_METHJ (30S ribosomal protein S4e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps4e PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.320e-22
Identity = 61/191 (31.94%), Postives = 103/191 (53.93%), Query Frame = 2
Query:   35 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEE---NKITDFIKFDVGNIVMVTGGRNRGRVGII 598
            HLKR+ +PK W + +    F  K S GPH ++  LP+++  R+++      +E   +L +R ++V+G+         G  D+VSIPK+ +++R+L D KGR     + ++ A  +L K+ +    + G   +N  DG  +   D   K+ D+I L L+E   N+I D   F  GN+ M+ GG++ G VG I
Sbjct:    4 HLKRVVSPKSWGIPRKTDKFVTKTSPGPH-NKNALPIVVWARDQMGIVRNMKEAKHVLREREIIVNGRPVRHPDMGIGIFDIVSIPKSGKHYRILRDKKGRHVTIPIDEDAASSRLVKITNKTIVKGGRIQLNLRDGSNV-LTDKQYKSGDSIVLSLKEGQKNEIIDHFPFQPGNMAMIIGGKHSGVVGRI 192          
BLAST of CF417403 vs. ExPASy Swiss-Prot
Match: RS4E_SULTO (30S ribosomal protein S4e OS=Sulfolobus tokodaii GN=rps4e PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 5.663e-22
Identity = 65/211 (30.81%), Postives = 105/211 (49.76%), Query Frame = 2
Query:   35 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIK-----NREKHKGSFETI 637
            H+ R  AP    L K    +  + + GPHK  E +PL L+L++ L  A T RE   ++++  ++VDG+VR D  +P G MDV+SIP ++  FR++ D         +  E+AK+K  ++ +    + G   +N  DGR I  P   +   +     T+K+++    I    +   G   ++ GGRN G  G+IK       +K K S  TI
Sbjct:    3 HITRFEAPWFLNLSKKEYKWTIRANPGPHKLSESIPLALLLKHYLNVAETTREAKRLVVEGKIMVDGRVRKDYKFPVGLMDVISIPSSDLYFRIVPDNIKYLMPVKISKEDAKYKFVRIVNKTTNKNGNIQLNLEDGRNILIPKEKVPEMNYPTLTTLKIEIPSQNIIKSYELSEGKYAIIIGGRNVGLHGVIKTIQYAKYKKRKYSIVTI 213          
The following BLAST results are available for this feature:
BLAST of CF417403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
RS4E_SULIN2.716e-2433.6830S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIM2.716e-2433.6830S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIL2.716e-2433.6830S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIK2.716e-2433.6830S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIA2.716e-2433.6830S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_PYRAR2.716e-2438.4230S ribosomal protein S4e OS=Pyrobaculum arsenatic... [more]
RS4E_PYRCJ3.547e-2436.3230S ribosomal protein S4e OS=Pyrobaculum calidifon... [more]
RS4E_THENV1.032e-2335.2930S ribosomal protein S4e OS=Thermoproteus neutrop... [more]
RS4E_METHJ3.320e-2231.9430S ribosomal protein S4e OS=Methanospirillum hung... [more]
RS4E_SULTO5.663e-2230.8130S ribosomal protein S4e OS=Sulfolobus tokodaii G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-333 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417403 ID=CF417403; Name=CF417403; organism=Citrus sinensis; type=EST; length=669bp
CAAACTCACAAAAATGGCTAGAGGATTGAAGAAGCACTTGAAGAGGCTCA
ATGCCCCTAAGCACTGGATGCTTGACAAGCTTGGTGGTGCATTTGCACCT
AAGCCATCATCTGGTCCCCACAAGTCAAGGGAATGCTTGCCATTGATCCT
TGTATTGCGAAACCGTTTGAAATATGCTCTCACATATCGTGAAGTTATTG
CTATTCTGATGCAACGACATGTTCTTGTTGATGGGAAGGTTAGGACAGAT
AAGACCTACCCTGCTGGTTTCATGGATGTTGTGTCAATTCCCAAGACCAA
CGAGAACTTCCGTCTCCTTTATGACACCAAGGGTCGCTTCCGTCTCCATT
CCCTCAGAGATGAGGAGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTC
CAGTTTGGCCAGAAAGGTATCCCATACATCAACACCTATGATGGGCGTAC
CATCCGCTACCCTGACCCACTCATCAAAGCCAATGATACCATCAAACTTG
ACTTAGAAGAGAACAAGATCACTGACTTCATCAAGTTTGATGTTGGGAAT
ATTGTCATGGTCACTGGGGGTAGAAACAGAGGTCGAGTTGGAATCATCAA
GAACAGGGAAAAGCATAAGGGAAGTTTTGAGACCATCCATATTCAAGATG
CCCTTGGGTCATGAGTTTG
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