CF417404
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: TAF5L_HUMAN (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Homo sapiens GN=TAF5L PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11 Identity = 49/160 (30.63%), Postives = 74/160 (46.25%), Query Frame = 3 Query: 57 SASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 527 S S DRT ++W+ AGH V+ V P+ + A+G D + LW +G RL++ G V+ +L FSPN +Y A +Q +K+WDL S ++ ++L+ NI TSL +S D + S D +RVW I Sbjct: 401 SGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVL-SLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELR------------------GHTDNI--TSLTFSPDSGLIASASMDNSVRVWDI 539 HSP 2 Score: 68.1662 bits (165), Expect = 4.415e-11 Identity = 41/116 (35.34%), Postives = 65/116 (56.03%), Query Frame = 3 Query: 9 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV--IHALCFSPNRYWLCAAT-EQSIKIWDLES 347 V CV+F PN+ + + S D+TV++W+ GH G V ++A SP+G AS G+D + LWDLA G LY G I +L FSP+ + +A+ + S+++WD+ + Sbjct: 429 VDCVKFHPNSNY--LATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASG-TLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDIRN 541
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: POF1_SCHPO (F-box/WD repeat-containing protein pof1 OS=Schizosaccharomyces pombe GN=pof1 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11 Identity = 55/174 (31.61%), Postives = 76/174 (43.68%), Query Frame = 3 Query: 9 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSV--DGSTLFSGYTDGVIRVW 521 V C+ F L VS S D TVK+W+ S K R TL GHTG VN+V + D L SG D I +W L L++ A + +L + +R + C + + +IK WD+E K V L + W + D L SG DGV++VW Sbjct: 356 VLCLTFDSTLL----VSGSADCTVKLWHFSGGK-RITLRGHTGPVNSVRIIRDRGLVLSGSDDSTIKIWSLETNTCLHTFSAHIGPVQSLALADSRLFSC-SLDGTIKQWDIEKKKCVHTLFGHIEGV------------------------WEIAADHLRLISGAHDGVVKVW 499
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: WDR5_XENTR (WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11 Identity = 45/173 (26.01%), Postives = 85/173 (49.13%), Query Frame = 3 Query: 9 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 521 VS V+FSPN + S+S D+ +K+W + K T++GH ++ VA S D +L S D + +WD++ GK L +L + C F+P + + + ++S++IWD+++ ++ L ++++++ DGS + S DG+ R+W Sbjct: 48 VSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: WDR5_RAT (WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11 Identity = 45/173 (26.01%), Postives = 85/173 (49.13%), Query Frame = 3 Query: 9 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 521 VS V+FSPN + S+S D+ +K+W + K T++GH ++ VA S D +L S D + +WD++ GK L +L + C F+P + + + ++S++IWD+++ ++ L ++++++ DGS + S DG+ R+W Sbjct: 48 VSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: WDR5_MOUSE (WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11 Identity = 45/173 (26.01%), Postives = 85/173 (49.13%), Query Frame = 3 Query: 9 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 521 VS V+FSPN + S+S D+ +K+W + K T++GH ++ VA S D +L S D + +WD++ GK L +L + C F+P + + + ++S++IWD+++ ++ L ++++++ DGS + S DG+ R+W Sbjct: 48 VSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: WDR5_HUMAN (WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11 Identity = 45/173 (26.01%), Postives = 85/173 (49.13%), Query Frame = 3 Query: 9 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 521 VS V+FSPN + S+S D+ +K+W + K T++GH ++ VA S D +L S D + +WD++ GK L +L + C F+P + + + ++S++IWD+++ ++ L ++++++ DGS + S DG+ R+W Sbjct: 48 VSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: WDR5_BOVIN (WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11 Identity = 45/173 (26.01%), Postives = 85/173 (49.13%), Query Frame = 3 Query: 9 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 521 VS V+FSPN + S+S D+ +K+W + K T++GH ++ VA S D +L S D + +WD++ GK L +L + C F+P + + + ++S++IWD+++ ++ L ++++++ DGS + S DG+ R+W Sbjct: 48 VSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: WD51B_PONAB (WD repeat-containing protein 51B OS=Pongo abelii GN=WDR51B PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11 Identity = 40/125 (32.00%), Postives = 69/125 (55.20%), Query Frame = 3 Query: 6 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL--YSLDAGAVIHALCFSP-NRYWLCAATEQSIKIWDLESKSIVEDLK 371 WV C +FSP+ IVS S D+T+K+W+ +N + + G+ N V +P G+ AS G D + +WD+ K L Y + +G V + + F P + Y + A+++ ++KI DL ++ L+ Sbjct: 146 WVRCAKFSPDGR--LIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGV-NCISFHPSDNYLVTASSDGTLKILDLLEGRLIYTLQ 267
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: WDR61_DANRE (WD repeat-containing protein 61 OS=Danio rerio GN=wdr61 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.588e-11 Identity = 55/178 (30.90%), Postives = 80/178 (44.94%), Query Frame = 3 Query: 6 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA--TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCFSPNRYWLCAATE-QSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 527 W + S TIV+ S D VKVW S+ KL TL GH V +V +S +G++ AS D I LWDL GK++ S+DAG V + FSP+ ++ + + I+ +ES L + S+ +S DG L SG DG+I ++ I Sbjct: 20 WTAAWGRSEKDGSETIVTGSLDDLVKVWKWSDEKLELQWTLEGHQLGVVSVNISQNGAIAASSSLDAHIRLWDLETGKQIKSMDAGPVDAWTVAFSPDSKYIATGSHLGKVNIFGVESGKKEHSLDT--------------------RGKFILSIAYSPDGKYLASGAIDGIINIFDI 177
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: WD51A_HUMAN (WD repeat-containing protein 51A OS=Homo sapiens GN=WDR51A PE=2 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 2.588e-11 Identity = 42/115 (36.52%), Postives = 66/115 (57.39%), Query Frame = 3 Query: 6 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL--YSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDL 341 WV C +FSP+ IVSAS D+TVK+W+ S+ + + H G+V V P G+ A+ G D + +WD+ + L Y L + AV + L F P+ Y + A+++ ++KI DL Sbjct: 147 WVRCAKFSPD--GRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAV-NGLSFHPSGNYLITASSDSTLKILDL 258 The following BLAST results are available for this feature:
BLAST of CF417404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417404 ID=CF417404; Name=CF417404; organism=Citrus sinensis; type=EST; length=664bpback to top |