CF417404

Overview
NameCF417404
Unique NameCF417404
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: TAF5L_HUMAN (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Homo sapiens GN=TAF5L PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11
Identity = 49/160 (30.63%), Postives = 74/160 (46.25%), Query Frame = 3
Query:   57 SASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 527
            S S DRT ++W+          AGH   V+ V   P+ +  A+G  D  + LW   +G   RL++   G V+ +L FSPN +Y   A  +Q +K+WDL S ++ ++L+                      NI  TSL +S D   + S   D  +RVW I
Sbjct:  401 SGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVL-SLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELR------------------GHTDNI--TSLTFSPDSGLIASASMDNSVRVWDI 539          

HSP 2 Score: 68.1662 bits (165), Expect = 4.415e-11
Identity = 41/116 (35.34%), Postives = 65/116 (56.03%), Query Frame = 3
Query:    9 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV--IHALCFSPNRYWLCAAT-EQSIKIWDLES 347
            V CV+F PN+    + + S D+TV++W+           GH G V ++A SP+G   AS G+D  + LWDLA G  LY    G    I +L FSP+   + +A+ + S+++WD+ +
Sbjct:  429 VDCVKFHPNSNY--LATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASG-TLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDIRN 541          
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: POF1_SCHPO (F-box/WD repeat-containing protein pof1 OS=Schizosaccharomyces pombe GN=pof1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11
Identity = 55/174 (31.61%), Postives = 76/174 (43.68%), Query Frame = 3
Query:    9 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSV--DGSTLFSGYTDGVIRVW 521
            V C+ F    L    VS S D TVK+W+ S  K R TL GHTG VN+V +  D  L  SG  D  I +W L     L++  A    + +L  + +R + C + + +IK WD+E K  V  L   +                           W +  D   L SG  DGV++VW
Sbjct:  356 VLCLTFDSTLL----VSGSADCTVKLWHFSGGK-RITLRGHTGPVNSVRIIRDRGLVLSGSDDSTIKIWSLETNTCLHTFSAHIGPVQSLALADSRLFSC-SLDGTIKQWDIEKKKCVHTLFGHIEGV------------------------WEIAADHLRLISGAHDGVVKVW 499          
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: WDR5_XENTR (WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 45/173 (26.01%), Postives = 85/173 (49.13%), Query Frame = 3
Query:    9 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 521
            VS V+FSPN     + S+S D+ +K+W   + K   T++GH   ++ VA S D +L  S   D  + +WD++ GK L +L   +     C F+P    + + + ++S++IWD+++   ++ L                           ++++++ DGS + S   DG+ R+W
Sbjct:   48 VSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198          
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: WDR5_RAT (WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 45/173 (26.01%), Postives = 85/173 (49.13%), Query Frame = 3
Query:    9 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 521
            VS V+FSPN     + S+S D+ +K+W   + K   T++GH   ++ VA S D +L  S   D  + +WD++ GK L +L   +     C F+P    + + + ++S++IWD+++   ++ L                           ++++++ DGS + S   DG+ R+W
Sbjct:   48 VSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198          
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: WDR5_MOUSE (WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 45/173 (26.01%), Postives = 85/173 (49.13%), Query Frame = 3
Query:    9 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 521
            VS V+FSPN     + S+S D+ +K+W   + K   T++GH   ++ VA S D +L  S   D  + +WD++ GK L +L   +     C F+P    + + + ++S++IWD+++   ++ L                           ++++++ DGS + S   DG+ R+W
Sbjct:   48 VSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198          
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: WDR5_HUMAN (WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 45/173 (26.01%), Postives = 85/173 (49.13%), Query Frame = 3
Query:    9 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 521
            VS V+FSPN     + S+S D+ +K+W   + K   T++GH   ++ VA S D +L  S   D  + +WD++ GK L +L   +     C F+P    + + + ++S++IWD+++   ++ L                           ++++++ DGS + S   DG+ R+W
Sbjct:   48 VSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198          
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: WDR5_BOVIN (WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 45/173 (26.01%), Postives = 85/173 (49.13%), Query Frame = 3
Query:    9 VSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVW 521
            VS V+FSPN     + S+S D+ +K+W   + K   T++GH   ++ VA S D +L  S   D  + +WD++ GK L +L   +     C F+P    + + + ++S++IWD+++   ++ L                           ++++++ DGS + S   DG+ R+W
Sbjct:   48 VSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198          
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: WD51B_PONAB (WD repeat-containing protein 51B OS=Pongo abelii GN=WDR51B PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.982e-11
Identity = 40/125 (32.00%), Postives = 69/125 (55.20%), Query Frame = 3
Query:    6 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL--YSLDAGAVIHALCFSP-NRYWLCAATEQSIKIWDLESKSIVEDLK 371
            WV C +FSP+     IVS S D+T+K+W+ +N +     +   G+ N V  +P G+  AS G D  + +WD+   K L  Y + +G V + + F P + Y + A+++ ++KI DL    ++  L+
Sbjct:  146 WVRCAKFSPDGR--LIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGV-NCISFHPSDNYLVTASSDGTLKILDLLEGRLIYTLQ 267          
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: WDR61_DANRE (WD repeat-containing protein 61 OS=Danio rerio GN=wdr61 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.588e-11
Identity = 55/178 (30.90%), Postives = 80/178 (44.94%), Query Frame = 3
Query:    6 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA--TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCFSPNRYWLCAATE-QSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXXNIYCTSLNWSVDGSTLFSGYTDGVIRVWGI 527
            W +    S      TIV+ S D  VKVW  S+ KL    TL GH   V +V +S +G++ AS   D  I LWDL  GK++ S+DAG V    + FSP+  ++   +    + I+ +ES      L                         +  S+ +S DG  L SG  DG+I ++ I
Sbjct:   20 WTAAWGRSEKDGSETIVTGSLDDLVKVWKWSDEKLELQWTLEGHQLGVVSVNISQNGAIAASSSLDAHIRLWDLETGKQIKSMDAGPVDAWTVAFSPDSKYIATGSHLGKVNIFGVESGKKEHSLDT--------------------RGKFILSIAYSPDGKYLASGAIDGIINIFDI 177          
BLAST of CF417404 vs. ExPASy Swiss-Prot
Match: WD51A_HUMAN (WD repeat-containing protein 51A OS=Homo sapiens GN=WDR51A PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.588e-11
Identity = 42/115 (36.52%), Postives = 66/115 (57.39%), Query Frame = 3
Query:    6 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL--YSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDL 341
            WV C +FSP+     IVSAS D+TVK+W+ S+ +   +   H G+V  V   P G+  A+ G D  + +WD+   + L  Y L + AV + L F P+  Y + A+++ ++KI DL
Sbjct:  147 WVRCAKFSPD--GRLIVSASDDKTVKLWDKSSRECVHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAV-NGLSFHPSGNYLITASSDSTLKILDL 258          
The following BLAST results are available for this feature:
BLAST of CF417404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
TAF5L_HUMAN1.518e-1130.63TAF5-like RNA polymerase II p300/CBP-associated fa... [more]
POF1_SCHPO1.518e-1131.61F-box/WD repeat-containing protein pof1 OS=Schizos... [more]
WDR5_XENTR1.982e-1126.01WD repeat-containing protein 5 OS=Xenopus tropical... [more]
WDR5_RAT1.982e-1126.01WD repeat-containing protein 5 OS=Rattus norvegicu... [more]
WDR5_MOUSE1.982e-1126.01WD repeat-containing protein 5 OS=Mus musculus GN=... [more]
WDR5_HUMAN1.982e-1126.01WD repeat-containing protein 5 OS=Homo sapiens GN=... [more]
WDR5_BOVIN1.982e-1126.01WD repeat-containing protein 5 OS=Bos taurus GN=WD... [more]
WD51B_PONAB1.982e-1132.00WD repeat-containing protein 51B OS=Pongo abelii G... [more]
WDR61_DANRE2.588e-1130.90WD repeat-containing protein 61 OS=Danio rerio GN=... [more]
WD51A_HUMAN2.588e-1136.52WD repeat-containing protein 51A OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-334 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417404 ID=CF417404; Name=CF417404; organism=Citrus sinensis; type=EST; length=664bp
CTGAGTGGGTTTCTTGTGTTAGGTTCAGCCCCAACACGCTTCAGCCCACT
ATCGTTTCCGCCTCGTGGGACCGTACGGTCAAAGTGTGGAATTTGAGCAA
CTGCAAGCTTAGGGCTACTCTTGCCGGGCACACTGGATACGTGAACACCG
TCGCAGTGTCGCCGGATGGTTCGTTGTGTGCCAGTGGAGGGAAAGATGGT
GTGATTCTGTTGTGGGATTTGGCTGAGGGAAAAAGACTCTACTCGCTCGA
CGCTGGTGCTGTCATTCACGCGCTCTGCTTCAGTCCTAATAGGTATTGGT
TGTGTGCGGCGACTGAGCAGAGTATAAAGATCTGGGATTTGGAGAGCAAG
AGCATTGTCGAGGATCTTAAGGTTGATCTTAAGACCGAGGCCGAGAAATC
TGAGGCCACCACCGCCACCACCACCATAAAAAAGAAGAACATTTACTGCA
CAAGCTTGAACTGGAGTGTTGATGGAAGCACCTTGTTCAGTGGTTATACA
GATGGTGTGATCAGAGTCTGGGGTATTGGCCGTTATTGAAAACTGCTTGA
GTAATTGCAAACTGCTGTTCTTTTTCGATTACAAACTAGTTTCTCGACTT
TGTAGGCAGTTTCAGACCTATTTAAGATTTAAGATTTTGTTCAAAATGTT
TTTAAGGATATTTT
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