CF417406

Overview
NameCF417406
Unique NameCF417406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_SYNPX (Translation initiation factor IF-3 OS=Synechococcus sp. (strain WH8102) GN=infC PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 45/110 (40.91%), Postives = 63/110 (57.27%), Query Frame = 1
Query:    4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKALSQKAQEPPKKKDKQV 330
            K  +++ ++KE+KM Y IDQHDY VR+  A +FLK GDKVK  V  +GRE +   +A  L+RR   D+ E A I++  K   RN+ + L P K    K +E      K V
Sbjct:   89 KKKSHQTEVKEVKMRYKIDQHDYDVRIGQAVRFLKAGDKVKCTVIFRGREIQHTALAETLLRRMAKDLEEKAEIQQAPKREGRNMIMFLTPRKTPLVKKEEKEAAPTKAV 198          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3C_EUGGR (Translation initiation factor IF-3, chloroplastic OS=Euglena gracilis PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14
Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = 1
Query:   25 DLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGEL--AIEENKKFRDRNIFIILVPNKALSQKAQEPPKKKDKQVVDEVSTG 351
            ++KELK+ + I QHDY VR+K ARKFL+ G ++KV +  KGREN+F  I   +++RFQND+ ++  A    KK   R I  +    +AL   A+   ++  K   +E   G
Sbjct:  388 EVKELKVSHKIGQHDYDVRVKQARKFLEGGHRIKVSMEFKGRENQFVEIGRAVMKRFQNDLADMGKADAVPKKLGTRLILNLAPAGEALKVIAERRAERDRKAAAEEEGEG 498          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_PROMA (Translation initiation factor IF-3 OS=Prochlorococcus marinus GN=infC PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14
Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = 1
Query:    4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKA-LSQKAQE 303
            K  +++ ++KE+KM Y ID+HDY VR+  A +FLK GDKVK  V  +GRE +  N+A  L+ R   D+ E A +++  K   RN+ + L P K  L +K QE
Sbjct:   89 KKKSHQTEVKEVKMRYKIDEHDYQVRIGQATRFLKAGDKVKCTVIFRGREIQHTNLAESLLARMAKDLEEPAEVQQAPKREGRNMIMFLTPRKTPLIKKEQE 190          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_PROM5 (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain MIT 9515) GN=infC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.399e-14
Identity = 41/107 (38.32%), Postives = 65/107 (60.75%), Query Frame = 1
Query:    4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKALSQKAQEPPKKKD 321
            +  +++ ++KE+KM Y ID+HDY VR+  A +FLK GDKVK  V  +GRE +  N+A  L+ R  ND+ E + +++  K   RN+ + L P K    K +E  K+ +
Sbjct:   89 RKKSHQTEVKEVKMRYKIDKHDYDVRIGQAVRFLKAGDKVKCTVIFRGREIQHSNLAETLLLRMANDLEEQSEVQQRPKREGRNMIMFLSPRKTPLIKKEEDAKENN 195          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_SYNS9 (Translation initiation factor IF-3 OS=Synechococcus sp. (strain CC9902) GN=infC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13
Identity = 45/116 (38.79%), Postives = 66/116 (56.90%), Query Frame = 1
Query:    4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKALSQKAQEPPKKKDKQVVDEVST 348
            K  +++ ++KE+KM Y ID HDY VR+  A++FLK GDKVK  V  +GRE +   +A  L+RR   D+ E A I+++ K   RN+ + L P K    K  +    KD  V   + T
Sbjct:   89 KKKSHQTEVKEVKMRYKIDSHDYDVRIGQAQRFLKAGDKVKCTVIFRGREIQHTALAEVLLRRMAKDLEEKAEIQQSPKREGRNMIMFLTPRKTPLLKKDD----KDSSVHQAIRT 200          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_SYNPW (Translation initiation factor IF-3 OS=Synechococcus sp. (strain WH7803) GN=infC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13
Identity = 41/93 (44.09%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNK 279
            K  +++ ++KE+KM Y IDQHDY VR+  A++FLK GDKVK  V  +GRE +   +A  L+RR   D+ E A I++  K   RN+ + L P K
Sbjct:   89 KKKSHQTEVKEVKMRYKIDQHDYDVRIGQAQRFLKAGDKVKCTVIFRGREIQHTALAETLLRRMAKDLEEPAEIQQPPKREGRNMIMFLTPRK 181          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_PROM0 (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain MIT 9301) GN=infC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13
Identity = 39/93 (41.94%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNK 279
            +  +++ ++KE+KM Y ID+HDY VR+  A KFLK GDKVK  V  +GRE +  N+A  L+ R  ND+ E + +++  K   RN+ + L P K
Sbjct:   89 RKKSHQTEVKEVKMRYKIDKHDYDVRIGQATKFLKSGDKVKCTVIFRGREIQHSNLAETLLLRMANDLEEQSEVQQKPKREGRNMIMFLSPRK 181          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_NOSP7 (Translation initiation factor IF-3 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=infC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13
Identity = 39/88 (44.32%), Postives = 60/88 (68.18%), Query Frame = 1
Query:   25 DLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDV---GELAIEENKKFRDRNIFIILVPNK 279
            D+KE+KM Y I++HDY+VR+K A +FLKDGDKVK  V  +GRE +  ++A +L++R   D+   GEL  ++  K   RN+ +++ P K
Sbjct:   92 DVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKATVMFRGREIQHSDLAEDLLKRMATDLEPFGEL--QQAPKKEGRNMMMLISPKK 177          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_ANAVT (Translation initiation factor IF-3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=infC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13
Identity = 36/86 (41.86%), Postives = 58/86 (67.44%), Query Frame = 1
Query:   25 DLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNK 279
            D+KE+KM Y I++HDY+VR+K A +FLKDGDKVK  V  +GRE +  ++A +L++R   D+     +++  K   RN+ +++ P K
Sbjct:   92 DVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKATVMFRGREIQHSDLAEDLLKRMATDLEPFGEVQQAPKKEGRNMMMLISPKK 177          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_ANASP (Translation initiation factor IF-3 OS=Anabaena sp. (strain PCC 7120) GN=infC PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13
Identity = 36/86 (41.86%), Postives = 58/86 (67.44%), Query Frame = 1
Query:   25 DLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNK 279
            D+KE+KM Y I++HDY+VR+K A +FLKDGDKVK  V  +GRE +  ++A +L++R   D+     +++  K   RN+ +++ P K
Sbjct:   92 DVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKATVMFRGREIQHSDLAEDLLKRMATDLEPFGEVQQAPKKEGRNMMMLISPKK 177          
The following BLAST results are available for this feature:
BLAST of CF417406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
IF3_SYNPX4.924e-1440.91Translation initiation factor IF-3 OS=Synechococcu... [more]
IF3C_EUGGR4.924e-1438.74Translation initiation factor IF-3, chloroplastic ... [more]
IF3_PROMA6.431e-1442.16Translation initiation factor IF-3 OS=Prochlorococ... [more]
IF3_PROM58.399e-1438.32Translation initiation factor IF-3 OS=Prochlorococ... [more]
IF3_SYNS91.097e-1338.79Translation initiation factor IF-3 OS=Synechococcu... [more]
IF3_SYNPW1.097e-1344.09Translation initiation factor IF-3 OS=Synechococcu... [more]
IF3_PROM01.097e-1341.94Translation initiation factor IF-3 OS=Prochlorococ... [more]
IF3_NOSP71.097e-1344.32Translation initiation factor IF-3 OS=Nostoc punct... [more]
IF3_ANAVT1.097e-1341.86Translation initiation factor IF-3 OS=Anabaena var... [more]
IF3_ANASP1.097e-1341.86Translation initiation factor IF-3 OS=Anabaena sp.... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-336 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417406 ID=CF417406; Name=CF417406; organism=Citrus sinensis; type=EST; length=714bp
AAGAAAAGTGCAGCCAATCGGATGGATTTGAAGGAACTTAAAATGGGTTA
TAATATTGACCAGCATGATTATTCTGTGCGTCTAAAAGCTGCAAGGAAGT
TTCTGAAAGATGGAGACAAGGTTAAGGTCATAGTGAACCTCAAAGGGCGG
GAAAATGAATTCAGAAATATTGCTATTGAGCTAATACGACGTTTCCAGAA
TGATGTTGGGGAGCTTGCTATTGAGGAGAACAAAAAATTCAGAGATAGGA
ATATATTTATAATTTTAGTTCCAAATAAGGCCCTCTCACAGAAGGCTCAA
GAACCACCGAAGAAGAAAGATAAACAAGTTGTAGATGAAGTCTCAACTGG
TGTCTGAGTGCATTCAGCCATTCCAAGTGGGGTTTTGACAACATAACAAA
TTGGCCGGTAATCCTTATATGTGCCTTTCGACTGGGATGTGTTGAAATTC
GTGTATAGAATTAGTGTGTTACAGCTGTGTGGCATATTTATTAGATATTC
TATAACATAAGCAGCTTTTTCAGATCGAATAGTTGTAACATTTGATAGAT
CCATTACTTCTTTTTTATTTAGACAATCAAGACGTCATACAAGGTTCAGT
AAATGGGCATGTATATGTTTCCCTGTGAGGCTGTTCTGGAAGCAAGAACA
ATTTTTAAAATTTTGTATGCAAGATGACCAGTCATGGTATTTGTTCCGCA
AAAAAAAAAAAAAA
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