CF417406
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_SYNPX (Translation initiation factor IF-3 OS=Synechococcus sp. (strain WH8102) GN=infC PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14 Identity = 45/110 (40.91%), Postives = 63/110 (57.27%), Query Frame = 1 Query: 4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKALSQKAQEPPKKKDKQV 330 K +++ ++KE+KM Y IDQHDY VR+ A +FLK GDKVK V +GRE + +A L+RR D+ E A I++ K RN+ + L P K K +E K V Sbjct: 89 KKKSHQTEVKEVKMRYKIDQHDYDVRIGQAVRFLKAGDKVKCTVIFRGREIQHTALAETLLRRMAKDLEEKAEIQQAPKREGRNMIMFLTPRKTPLVKKEEKEAAPTKAV 198
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3C_EUGGR (Translation initiation factor IF-3, chloroplastic OS=Euglena gracilis PE=1 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.924e-14 Identity = 43/111 (38.74%), Postives = 65/111 (58.56%), Query Frame = 1 Query: 25 DLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGEL--AIEENKKFRDRNIFIILVPNKALSQKAQEPPKKKDKQVVDEVSTG 351 ++KELK+ + I QHDY VR+K ARKFL+ G ++KV + KGREN+F I +++RFQND+ ++ A KK R I + +AL A+ ++ K +E G Sbjct: 388 EVKELKVSHKIGQHDYDVRVKQARKFLEGGHRIKVSMEFKGRENQFVEIGRAVMKRFQNDLADMGKADAVPKKLGTRLILNLAPAGEALKVIAERRAERDRKAAAEEEGEG 498
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_PROMA (Translation initiation factor IF-3 OS=Prochlorococcus marinus GN=infC PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.431e-14 Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = 1 Query: 4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKA-LSQKAQE 303 K +++ ++KE+KM Y ID+HDY VR+ A +FLK GDKVK V +GRE + N+A L+ R D+ E A +++ K RN+ + L P K L +K QE Sbjct: 89 KKKSHQTEVKEVKMRYKIDEHDYQVRIGQATRFLKAGDKVKCTVIFRGREIQHTNLAESLLARMAKDLEEPAEVQQAPKREGRNMIMFLTPRKTPLIKKEQE 190
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_PROM5 (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain MIT 9515) GN=infC PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.399e-14 Identity = 41/107 (38.32%), Postives = 65/107 (60.75%), Query Frame = 1 Query: 4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKALSQKAQEPPKKKD 321 + +++ ++KE+KM Y ID+HDY VR+ A +FLK GDKVK V +GRE + N+A L+ R ND+ E + +++ K RN+ + L P K K +E K+ + Sbjct: 89 RKKSHQTEVKEVKMRYKIDKHDYDVRIGQAVRFLKAGDKVKCTVIFRGREIQHSNLAETLLLRMANDLEEQSEVQQRPKREGRNMIMFLSPRKTPLIKKEEDAKENN 195
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_SYNS9 (Translation initiation factor IF-3 OS=Synechococcus sp. (strain CC9902) GN=infC PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13 Identity = 45/116 (38.79%), Postives = 66/116 (56.90%), Query Frame = 1 Query: 4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNKALSQKAQEPPKKKDKQVVDEVST 348 K +++ ++KE+KM Y ID HDY VR+ A++FLK GDKVK V +GRE + +A L+RR D+ E A I+++ K RN+ + L P K K + KD V + T Sbjct: 89 KKKSHQTEVKEVKMRYKIDSHDYDVRIGQAQRFLKAGDKVKCTVIFRGREIQHTALAEVLLRRMAKDLEEKAEIQQSPKREGRNMIMFLTPRKTPLLKKDD----KDSSVHQAIRT 200
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_SYNPW (Translation initiation factor IF-3 OS=Synechococcus sp. (strain WH7803) GN=infC PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13 Identity = 41/93 (44.09%), Postives = 59/93 (63.44%), Query Frame = 1 Query: 4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNK 279 K +++ ++KE+KM Y IDQHDY VR+ A++FLK GDKVK V +GRE + +A L+RR D+ E A I++ K RN+ + L P K Sbjct: 89 KKKSHQTEVKEVKMRYKIDQHDYDVRIGQAQRFLKAGDKVKCTVIFRGREIQHTALAETLLRRMAKDLEEPAEIQQPPKREGRNMIMFLTPRK 181
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_PROM0 (Translation initiation factor IF-3 OS=Prochlorococcus marinus (strain MIT 9301) GN=infC PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13 Identity = 39/93 (41.94%), Postives = 59/93 (63.44%), Query Frame = 1 Query: 4 KSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNK 279 + +++ ++KE+KM Y ID+HDY VR+ A KFLK GDKVK V +GRE + N+A L+ R ND+ E + +++ K RN+ + L P K Sbjct: 89 RKKSHQTEVKEVKMRYKIDKHDYDVRIGQATKFLKSGDKVKCTVIFRGREIQHSNLAETLLLRMANDLEEQSEVQQKPKREGRNMIMFLSPRK 181
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_NOSP7 (Translation initiation factor IF-3 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=infC PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13 Identity = 39/88 (44.32%), Postives = 60/88 (68.18%), Query Frame = 1 Query: 25 DLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDV---GELAIEENKKFRDRNIFIILVPNK 279 D+KE+KM Y I++HDY+VR+K A +FLKDGDKVK V +GRE + ++A +L++R D+ GEL ++ K RN+ +++ P K Sbjct: 92 DVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKATVMFRGREIQHSDLAEDLLKRMATDLEPFGEL--QQAPKKEGRNMMMLISPKK 177
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_ANAVT (Translation initiation factor IF-3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=infC PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13 Identity = 36/86 (41.86%), Postives = 58/86 (67.44%), Query Frame = 1 Query: 25 DLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNK 279 D+KE+KM Y I++HDY+VR+K A +FLKDGDKVK V +GRE + ++A +L++R D+ +++ K RN+ +++ P K Sbjct: 92 DVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKATVMFRGREIQHSDLAEDLLKRMATDLEPFGEVQQAPKKEGRNMMMLISPKK 177
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_ANASP (Translation initiation factor IF-3 OS=Anabaena sp. (strain PCC 7120) GN=infC PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.097e-13 Identity = 36/86 (41.86%), Postives = 58/86 (67.44%), Query Frame = 1 Query: 25 DLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVPNK 279 D+KE+KM Y I++HDY+VR+K A +FLKDGDKVK V +GRE + ++A +L++R D+ +++ K RN+ +++ P K Sbjct: 92 DVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKATVMFRGREIQHSDLAEDLLKRMATDLEPFGEVQQAPKKEGRNMMMLISPKK 177 The following BLAST results are available for this feature:
BLAST of CF417406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417406 ID=CF417406; Name=CF417406; organism=Citrus sinensis; type=EST; length=714bpback to top |