CF417406
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_METC4 (Translation initiation factor IF-3 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=infC PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11 Identity = 31/85 (36.47%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 22 MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVP 273 +++KE+K+ ID+HDY V++KA ++F ++GDKVKV + +GRE ++I + L+ R + + E+A +E R + +IL P Sbjct: 88 VEVKEIKLRPGIDKHDYEVKMKAVQRFFEEGDKVKVTLRFRGREIAHQDIGLRLLERVKQETQEIAKVESEPMLEGRQMIMILAP 172
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_BUCAP (Translation initiation factor IF-3 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=infC PE=3 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11 Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 1 Query: 1 KKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELAIEEN--KKFRDRNIFIILVPNK 279 +K + +KE+K + D+ DY V+L+ +FL+DGDKVK+ + +GRE + I I+++ R +ND+ ELAI E+ K R + ++L P K Sbjct: 84 QKKKQKVIQVKEIKFRPSTDEGDYQVKLRNLIRFLEDGDKVKITLRFRGREMAHQKIGIDVLNRVKNDLIELAIIESFPSKIEGRQMIMVLAPKK 178
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_METS4 (Translation initiation factor IF-3 OS=Methylobacterium sp. (strain 4-46) GN=infC PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11 Identity = 30/85 (35.29%), Postives = 56/85 (65.88%), Query Frame = 1 Query: 22 MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVP 273 +++KE+K+ ID+HDY V++KA ++F ++GDKVKV + +GRE +++ + L+ R + + E+A +E + R + +IL P Sbjct: 88 VEVKEIKLRPGIDKHDYDVKMKAVQRFFEEGDKVKVTLRFRGREMAHQDLGLRLLERVKAETQEIAKVESEPQLEGRQMIMILAP 172
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_METPB (Translation initiation factor IF-3 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=infC PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11 Identity = 31/85 (36.47%), Postives = 55/85 (64.71%), Query Frame = 1 Query: 22 MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVP 273 +++KE+K+ ID+HDY V++KA ++F ++GDKVKV + +GRE ++I + L+ R + + E+A +E R + +IL P Sbjct: 88 VEVKEIKLRPGIDKHDYDVKMKAVQRFFEEGDKVKVTLRFRGREIAHQDIGLRLLERVKQETQEVAKVESEPMLEGRQMIMILAP 172
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_CAUCR (Translation initiation factor IF-3 OS=Caulobacter crescentus GN=infC PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11 Identity = 35/96 (36.46%), Postives = 59/96 (61.46%), Query Frame = 1 Query: 1 KKSAANR----MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVP 273 KK+ A + ++LKE+K+ NID HDY V+ KA +F ++GDKVKV + +GRE + ++L+++ + D E+A +E + R + +IL P Sbjct: 77 KKNEARKRQKVVELKEIKLRPNIDSHDYDVKAKAMHRFFEEGDKVKVTLRFRGREMAHPELGMKLLQKVKADFDEVAKVEYEPRMEGRQMIMILAP 172
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_CAUCN (Translation initiation factor IF-3 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=infC PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11 Identity = 35/96 (36.46%), Postives = 59/96 (61.46%), Query Frame = 1 Query: 1 KKSAANR----MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVP 273 KK+ A + ++LKE+K+ NID HDY V+ KA +F ++GDKVKV + +GRE + ++L+++ + D E+A +E + R + +IL P Sbjct: 77 KKNEARKRQKVVELKEIKLRPNIDSHDYDVKAKAMHRFFEEGDKVKVTLRFRGREMAHPELGMKLLQKVKADFDEVAKVEYEPRMEGRQMIMILAP 172
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_PORGI (Translation initiation factor IF-3 OS=Porphyromonas gingivalis GN=infC PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11 Identity = 35/104 (33.65%), Postives = 59/104 (56.73%), Query Frame = 1 Query: 1 KKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELAIEENKKFRDRNIFIILVPNKALSQKAQEPPK 312 +K+ + ++ +KE++ G D HDY+ +LK A++FL++G KVK V +GR F+ L+ RF ND+ + A E + I++ K+ S+K PPK Sbjct: 80 QKAKSVKIVIKEIRFGPQTDDHDYNFKLKHAKEFLQEGSKVKAYVFFRGRSILFKEQGEVLLLRFANDLEDFARVEQMPILEGKRMTIMLTPKSASKKGHTPPK 183
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_PORG3 (Translation initiation factor IF-3 OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=infC PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11 Identity = 35/104 (33.65%), Postives = 59/104 (56.73%), Query Frame = 1 Query: 1 KKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELAIEENKKFRDRNIFIILVPNKALSQKAQEPPK 312 +K+ + ++ +KE++ G D HDY+ +LK A++FL++G KVK V +GR F+ L+ RF ND+ + A E + I++ K+ S+K PPK Sbjct: 80 QKAKSVKIVIKEIRFGPQTDDHDYNFKLKHAKEFLQEGSKVKAYVFFRGRSILFKEQGEVLLLRFANDLEDFARVEQMPILEGKRMTIMLTPKSASKKGHTPPK 183
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_AQUAE (Translation initiation factor IF-3 OS=Aquifex aeolicus GN=infC PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11 Identity = 32/93 (34.41%), Postives = 59/93 (63.44%), Query Frame = 1 Query: 1 KKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELAIEENKKFRDRNIFIILVPNK 279 KK +++++K+++M ID+HD V+LK R+FL++GDKVKV + +GREN + + +L R N++ ++A E + ++ N I ++ K Sbjct: 80 KKQREHQIEVKDIRMKVRIDEHDLQVKLKHMREFLEEGDKVKVWLRFRGRENIYPELGKKLAERIINELSDIAEVEVQPKKEGNFMIFVLAPK 172
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_SHEON (Translation initiation factor IF-3 OS=Shewanella oneidensis GN=infC PE=3 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11 Identity = 31/94 (32.98%), Postives = 56/94 (59.57%), Query Frame = 1 Query: 1 KKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELAIEEN-KKFRDRNIFIILVPNK 279 +K ++ +KE+K D++DY V+L+ +FL+DGDK K+ + +GRE +N+ ++L+ R + D+ E A+ E+ K R ++L P K Sbjct: 84 QKKKQKQVQVKEIKFRPGTDENDYQVKLRNLIRFLEDGDKAKITLRFRGREMAHQNLGMDLLNRIKTDLDEYAVVESFPKMEGRQAIMVLAPKK 177 The following BLAST results are available for this feature:
BLAST of CF417406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >CF417406 ID=CF417406; Name=CF417406; organism=Citrus sinensis; type=EST; length=714bpback to top |