CF417406

Overview
NameCF417406
Unique NameCF417406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_METC4 (Translation initiation factor IF-3 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=infC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 31/85 (36.47%), Postives = 55/85 (64.71%), Query Frame = 1
Query:   22 MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVP 273
            +++KE+K+   ID+HDY V++KA ++F ++GDKVKV +  +GRE   ++I + L+ R + +  E+A +E       R + +IL P
Sbjct:   88 VEVKEIKLRPGIDKHDYEVKMKAVQRFFEEGDKVKVTLRFRGREIAHQDIGLRLLERVKQETQEIAKVESEPMLEGRQMIMILAP 172          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_BUCAP (Translation initiation factor IF-3 OS=Buchnera aphidicola subsp. Schizaphis graminum GN=infC PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 1
Query:    1 KKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELAIEEN--KKFRDRNIFIILVPNK 279
            +K     + +KE+K   + D+ DY V+L+   +FL+DGDKVK+ +  +GRE   + I I+++ R +ND+ ELAI E+   K   R + ++L P K
Sbjct:   84 QKKKQKVIQVKEIKFRPSTDEGDYQVKLRNLIRFLEDGDKVKITLRFRGREMAHQKIGIDVLNRVKNDLIELAIIESFPSKIEGRQMIMVLAPKK 178          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_METS4 (Translation initiation factor IF-3 OS=Methylobacterium sp. (strain 4-46) GN=infC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 30/85 (35.29%), Postives = 56/85 (65.88%), Query Frame = 1
Query:   22 MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVP 273
            +++KE+K+   ID+HDY V++KA ++F ++GDKVKV +  +GRE   +++ + L+ R + +  E+A +E   +   R + +IL P
Sbjct:   88 VEVKEIKLRPGIDKHDYDVKMKAVQRFFEEGDKVKVTLRFRGREMAHQDLGLRLLERVKAETQEIAKVESEPQLEGRQMIMILAP 172          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_METPB (Translation initiation factor IF-3 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=infC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 31/85 (36.47%), Postives = 55/85 (64.71%), Query Frame = 1
Query:   22 MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVP 273
            +++KE+K+   ID+HDY V++KA ++F ++GDKVKV +  +GRE   ++I + L+ R + +  E+A +E       R + +IL P
Sbjct:   88 VEVKEIKLRPGIDKHDYDVKMKAVQRFFEEGDKVKVTLRFRGREIAHQDIGLRLLERVKQETQEVAKVESEPMLEGRQMIMILAP 172          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_CAUCR (Translation initiation factor IF-3 OS=Caulobacter crescentus GN=infC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 35/96 (36.46%), Postives = 59/96 (61.46%), Query Frame = 1
Query:    1 KKSAANR----MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVP 273
            KK+ A +    ++LKE+K+  NID HDY V+ KA  +F ++GDKVKV +  +GRE     + ++L+++ + D  E+A +E   +   R + +IL P
Sbjct:   77 KKNEARKRQKVVELKEIKLRPNIDSHDYDVKAKAMHRFFEEGDKVKVTLRFRGREMAHPELGMKLLQKVKADFDEVAKVEYEPRMEGRQMIMILAP 172          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_CAUCN (Translation initiation factor IF-3 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=infC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 35/96 (36.46%), Postives = 59/96 (61.46%), Query Frame = 1
Query:    1 KKSAANR----MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVP 273
            KK+ A +    ++LKE+K+  NID HDY V+ KA  +F ++GDKVKV +  +GRE     + ++L+++ + D  E+A +E   +   R + +IL P
Sbjct:   77 KKNEARKRQKVVELKEIKLRPNIDSHDYDVKAKAMHRFFEEGDKVKVTLRFRGREMAHPELGMKLLQKVKADFDEVAKVEYEPRMEGRQMIMILAP 172          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_PORGI (Translation initiation factor IF-3 OS=Porphyromonas gingivalis GN=infC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 35/104 (33.65%), Postives = 59/104 (56.73%), Query Frame = 1
Query:    1 KKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELAIEENKKFRDRNIFIILVPNKALSQKAQEPPK 312
            +K+ + ++ +KE++ G   D HDY+ +LK A++FL++G KVK  V  +GR   F+     L+ RF ND+ + A  E     +     I++  K+ S+K   PPK
Sbjct:   80 QKAKSVKIVIKEIRFGPQTDDHDYNFKLKHAKEFLQEGSKVKAYVFFRGRSILFKEQGEVLLLRFANDLEDFARVEQMPILEGKRMTIMLTPKSASKKGHTPPK 183          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_PORG3 (Translation initiation factor IF-3 OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=infC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 35/104 (33.65%), Postives = 59/104 (56.73%), Query Frame = 1
Query:    1 KKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELAIEENKKFRDRNIFIILVPNKALSQKAQEPPK 312
            +K+ + ++ +KE++ G   D HDY+ +LK A++FL++G KVK  V  +GR   F+     L+ RF ND+ + A  E     +     I++  K+ S+K   PPK
Sbjct:   80 QKAKSVKIVIKEIRFGPQTDDHDYNFKLKHAKEFLQEGSKVKAYVFFRGRSILFKEQGEVLLLRFANDLEDFARVEQMPILEGKRMTIMLTPKSASKKGHTPPK 183          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_AQUAE (Translation initiation factor IF-3 OS=Aquifex aeolicus GN=infC PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 32/93 (34.41%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    1 KKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELAIEENKKFRDRNIFIILVPNK 279
            KK   +++++K+++M   ID+HD  V+LK  R+FL++GDKVKV +  +GREN +  +  +L  R  N++ ++A  E +  ++ N  I ++  K
Sbjct:   80 KKQREHQIEVKDIRMKVRIDEHDLQVKLKHMREFLEEGDKVKVWLRFRGRENIYPELGKKLAERIINELSDIAEVEVQPKKEGNFMIFVLAPK 172          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_SHEON (Translation initiation factor IF-3 OS=Shewanella oneidensis GN=infC PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 31/94 (32.98%), Postives = 56/94 (59.57%), Query Frame = 1
Query:    1 KKSAANRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELAIEEN-KKFRDRNIFIILVPNK 279
            +K    ++ +KE+K     D++DY V+L+   +FL+DGDK K+ +  +GRE   +N+ ++L+ R + D+ E A+ E+  K   R   ++L P K
Sbjct:   84 QKKKQKQVQVKEIKFRPGTDENDYQVKLRNLIRFLEDGDKAKITLRFRGREMAHQNLGMDLLNRIKTDLDEYAVVESFPKMEGRQAIMVLAPKK 177          
The following BLAST results are available for this feature:
BLAST of CF417406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
IF3_METC42.987e-1136.47Translation initiation factor IF-3 OS=Methylobacte... [more]
IF3_BUCAP2.987e-1136.84Translation initiation factor IF-3 OS=Buchnera aph... [more]
IF3_METS43.901e-1135.29Translation initiation factor IF-3 OS=Methylobacte... [more]
IF3_METPB3.901e-1136.47Translation initiation factor IF-3 OS=Methylobacte... [more]
IF3_CAUCR3.901e-1136.46Translation initiation factor IF-3 OS=Caulobacter ... [more]
IF3_CAUCN3.901e-1136.46Translation initiation factor IF-3 OS=Caulobacter ... [more]
IF3_PORGI5.095e-1133.65Translation initiation factor IF-3 OS=Porphyromona... [more]
IF3_PORG35.095e-1133.65Translation initiation factor IF-3 OS=Porphyromona... [more]
IF3_AQUAE5.095e-1134.41Translation initiation factor IF-3 OS=Aquifex aeol... [more]
IF3_SHEON6.655e-1132.98Translation initiation factor IF-3 OS=Shewanella o... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-336 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417406 ID=CF417406; Name=CF417406; organism=Citrus sinensis; type=EST; length=714bp
AAGAAAAGTGCAGCCAATCGGATGGATTTGAAGGAACTTAAAATGGGTTA
TAATATTGACCAGCATGATTATTCTGTGCGTCTAAAAGCTGCAAGGAAGT
TTCTGAAAGATGGAGACAAGGTTAAGGTCATAGTGAACCTCAAAGGGCGG
GAAAATGAATTCAGAAATATTGCTATTGAGCTAATACGACGTTTCCAGAA
TGATGTTGGGGAGCTTGCTATTGAGGAGAACAAAAAATTCAGAGATAGGA
ATATATTTATAATTTTAGTTCCAAATAAGGCCCTCTCACAGAAGGCTCAA
GAACCACCGAAGAAGAAAGATAAACAAGTTGTAGATGAAGTCTCAACTGG
TGTCTGAGTGCATTCAGCCATTCCAAGTGGGGTTTTGACAACATAACAAA
TTGGCCGGTAATCCTTATATGTGCCTTTCGACTGGGATGTGTTGAAATTC
GTGTATAGAATTAGTGTGTTACAGCTGTGTGGCATATTTATTAGATATTC
TATAACATAAGCAGCTTTTTCAGATCGAATAGTTGTAACATTTGATAGAT
CCATTACTTCTTTTTTATTTAGACAATCAAGACGTCATACAAGGTTCAGT
AAATGGGCATGTATATGTTTCCCTGTGAGGCTGTTCTGGAAGCAAGAACA
ATTTTTAAAATTTTGTATGCAAGATGACCAGTCATGGTATTTGTTCCGCA
AAAAAAAAAAAAAA
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