CF417406

Overview
NameCF417406
Unique NameCF417406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_HYPNA (Translation initiation factor IF-3 OS=Hyphomonas neptunium (strain ATCC 15444) GN=infC PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 34/96 (35.42%), Postives = 59/96 (61.46%), Query Frame = 1
Query:    1 KKSAANRM----DLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVP 273
            KK+AA +     +LKE+K+  NID HDY V+ +A  +F ++GDKVK+ +  +GRE   +++ +EL+ + + D  E A +E   K   + + ++L P
Sbjct:   84 KKAAARKKQKSSELKEIKIRPNIDTHDYEVKARAIARFFEEGDKVKITLRFRGREMAHQHLGMELLEKVKKDFEETAKVELEPKLEGKQMTMVLAP 179          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_CLOPE (Translation initiation factor IF-3 OS=Clostridium perfringens GN=infC PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 31/88 (35.23%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   22 MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGEL-AIEENKKFRDRNIFIILVPNKA 282
            + +KE+++   I++HD  ++ K A+KFL+ GDKVK+ V  +GRE E  ++ ++++  F   + E+ ++E+  K   RN+ +IL P KA
Sbjct:   90 ISVKEIRVSPTIEKHDLEIKAKNAKKFLEAGDKVKITVRFRGREAEHSHVGVKILDSFLAQLEEVCSVEKPAKLEGRNMIMILAPKKA 177          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3_METRJ (Translation initiation factor IF-3 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=infC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 29/85 (34.12%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   22 MDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELA-IEENKKFRDRNIFIILVP 273
            +++KE+K+   ID+HDY  ++K+  +F ++GDKVKV +  +GRE   ++I + L+ R +++  E+A +E       R + +IL P
Sbjct:   88 VEVKEIKLRPGIDKHDYDTKMKSVHRFFEEGDKVKVTLRFRGREMAHQDIGLRLLERVKSETAEIAKVESEPMLEGRQMIMILAP 172          
BLAST of CF417406 vs. ExPASy Swiss-Prot
Match: IF3C_CYACA (Translation initiation factor IF-3, chloroplastic OS=Cyanidium caldarium GN=infC PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = 1
Query:   28 LKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNDVGELAIEENKKFRD-RNIFIILVP 273
            +KE+KM Y I++HDY  RL  A KFLK G+KVKV +  KGRE +  ++   L+ R   D+ ++A  +   ++D + + +IL P
Sbjct:   97 VKEVKMTYKINEHDYETRLNQAFKFLKSGNKVKVTLTFKGREIQHLSLGTMLLNRLMTDLQQIAEVKRSPYQDGKTMILILTP 179          
The following BLAST results are available for this feature:
BLAST of CF417406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
IF3_HYPNA6.655e-1135.42Translation initiation factor IF-3 OS=Hyphomonas n... [more]
IF3_CLOPE6.655e-1135.23Translation initiation factor IF-3 OS=Clostridium ... [more]
IF3_METRJ8.691e-1134.12Translation initiation factor IF-3 OS=Methylobacte... [more]
IF3C_CYACA8.691e-1139.76Translation initiation factor IF-3, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-336 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417406 ID=CF417406; Name=CF417406; organism=Citrus sinensis; type=EST; length=714bp
AAGAAAAGTGCAGCCAATCGGATGGATTTGAAGGAACTTAAAATGGGTTA
TAATATTGACCAGCATGATTATTCTGTGCGTCTAAAAGCTGCAAGGAAGT
TTCTGAAAGATGGAGACAAGGTTAAGGTCATAGTGAACCTCAAAGGGCGG
GAAAATGAATTCAGAAATATTGCTATTGAGCTAATACGACGTTTCCAGAA
TGATGTTGGGGAGCTTGCTATTGAGGAGAACAAAAAATTCAGAGATAGGA
ATATATTTATAATTTTAGTTCCAAATAAGGCCCTCTCACAGAAGGCTCAA
GAACCACCGAAGAAGAAAGATAAACAAGTTGTAGATGAAGTCTCAACTGG
TGTCTGAGTGCATTCAGCCATTCCAAGTGGGGTTTTGACAACATAACAAA
TTGGCCGGTAATCCTTATATGTGCCTTTCGACTGGGATGTGTTGAAATTC
GTGTATAGAATTAGTGTGTTACAGCTGTGTGGCATATTTATTAGATATTC
TATAACATAAGCAGCTTTTTCAGATCGAATAGTTGTAACATTTGATAGAT
CCATTACTTCTTTTTTATTTAGACAATCAAGACGTCATACAAGGTTCAGT
AAATGGGCATGTATATGTTTCCCTGTGAGGCTGTTCTGGAAGCAAGAACA
ATTTTTAAAATTTTGTATGCAAGATGACCAGTCATGGTATTTGTTCCGCA
AAAAAAAAAAAAAA
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