CF417408

Overview
NameCF417408
Unique NameCF417408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 2.081e-24
Identity = 42/91 (46.15%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:  427 LLMARSIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 699
            ++   +I +   R+P N+ W D G + V+E TGVF   E AG H++ GAK+V+I+AP   D P +V+GVN + Y     I+SNASCTTNCL
Sbjct:   66 VINGHAITIFQERDPSNIKWADAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAP-SADAPMFVMGVNHEKYDKSLKIVSNASCTTNCL 155

HSP 2 Score: 41.2022 bits (95), Expect = 2.081e-24
Identity = 26/60 (43.33%), Postives = 34/60 (56.67%), Query Frame = 3 
Query:  228 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVK 404
            +KV +NGFGRIGR   R         ++VVAIND    +    ++ KYDST G F+  VK
Sbjct:    2 VKVGVNGFGRIGRLVTRA--AVLSGKVQVVAINDPFIDLNYMVYMFKYDSTHGHFKGTVK 59
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3PG_CRIFA (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Crithidia fasciculata GN=GAPDG PE=3 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 2.704e-24
Identity = 47/88 (53.41%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:  439 RSIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKP-DEPIISNASCTTNCL 699
            R + V ++RNP +LPWG LG+D VIE TG+F D+  A  H++ GAKKV+I+AP  G   T V+GVN   Y P    ++SNASCTTNCL
Sbjct:   85 RILCVKADRNPADLPWGKLGVDYVIESTGLFTDKAKAEGHVKGGAKKVVISAPASGGAKTIVMGVNQHEYNPATHHVVSNASCTTNCL 172

HSP 2 Score: 33.4982 bits (75), Expect = 2.704e-24
Identity = 21/57 (36.84%), Postives = 33/57 (57.89%), Query Frame = 3 
Query:  222 AKLKVAINGFGRIGRNFLR--CWHGRKDSPLEVVAIND-TGGVKQASHLLKYDSTLG 383
            A +KV INGFGRIGR   +  C      + L+VVA+ D +   +  ++ +K+D+  G
Sbjct:    2 APIKVGINGFGRIGRMVFQSMCEDNVLGTELDVVAVVDMSTDAEYFAYQMKFDTVHG 58
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3P_LENED (Glyceraldehyde-3-phosphate dehydrogenase OS=Lentinula edodes GN=gpd PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.707e-24
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:  439 RSIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 699
            + I V   ++   +PW  +G + ++E TGVF   E A  H++ GAKKV+I+AP   D P YV GVN D+Y     +ISNASCTTNCL
Sbjct:   71 KEISVFGEKDAGAIPWSSVGAEYIVESTGVFTTIEKASAHLKGGAKKVIISAP-SADAPMYVCGVNLDSYDSQHAVISNASCTTNCL 156

HSP 2 Score: 43.8986 bits (102), Expect = 2.707e-24
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 3 
Query:  228 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGK 440
            +KV INGFGRIGR  LR  +   +  + VVA+ND    ++   ++ KYDS  G F+  V+  G   + VDGK
Sbjct:    3 VKVGINGFGRIGRIVLR--NALLNPEVNVVAVNDPFIALEYMVYMFKYDSVHGRFKGTVETKG-GKLIVDGK 71
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: E4PD_ERWCT (D-erythrose-4-phosphate dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=epd PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.707e-24
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:  478 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCL 699
            LPW +L +D+V++ +GV+  RE    H+ AGAKKVL + PG  D+  T V GVN D  +    I+SNASCTTNC+
Sbjct:   86 LPWRELSVDIVLDCSGVYGSREDGEAHLAAGAKKVLFSHPGTTDLDATVVFGVNHDRLESGHRIVSNASCTTNCI 160

HSP 2 Score: 55.8398 bits (133), Expect = 2.707e-24
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 3 
Query:  228 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 404
            +++AINGFGRIGR+ LR  +  GR+ + + VVAIN+    +  +HLLKYDS+ G F  DV+
Sbjct:    3 IRIAINGFGRIGRSVLRALYESGRR-AEITVVAINELASAEGMAHLLKYDSSHGRFSWDVR 62
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3P_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.708e-24
Identity = 42/91 (46.15%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:  427 LLMARSIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 699
            ++  + I +   R+P N+ WG+ G + V+E TGVF   E AG H++ GAK+V+I+AP   D P +V+GVN + Y     I+SNASCTTNCL
Sbjct:   66 VINGKPITIFQERDPTNIKWGEAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAP-SADAPMFVMGVNHEKYDNSLKIVSNASCTTNCL 155

HSP 2 Score: 39.6614 bits (91), Expect = 2.708e-24
Identity = 25/60 (41.67%), Postives = 33/60 (55.00%), Query Frame = 3 
Query:  228 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVK 404
            +KV +NGFGRIGR   R         +E+VAIND    +    ++ +YDST G F   VK
Sbjct:    2 VKVGVNGFGRIGRLVTRA--AICSGKVEIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVK 59
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3P_AQUAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Aquifex aeolicus GN=gap PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.990e-24
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:  439 RSIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCL 699
            + I+V + ++P  +PWGDLG+D+VIE TGVF DRE A KH+Q GAKKV+ITAP K    T V+GVN + Y P E  IISNASCTTNCL
Sbjct:   70 KEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVIITAPAKNPDITVVLGVNEEKYNPKEHNIISNASCTTNCL 157

HSP 2 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 45/90 (50.00%), Postives = 54/90 (60.00%), Query Frame = 3 
Query:  228 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVHPGCF*PQPRQSPLGGLG 497
            +KV INGFGRIGR+F R   GR++  +E+VAIND    K  +HLLKYDS  GIF+  V+    D I VDGK         P Q P G LG
Sbjct:    3 IKVGINGFGRIGRSFFRASWGREE--IEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVE-AKDDSIVVDGKEIKVFAQKDPSQIPWGDLG 89
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: E4PD_VIBVY (D-erythrose-4-phosphate dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=epd PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.583e-24
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:  478 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCL 699
            LPW DL +DLV++ TGVF  +    +HI+AGAKKVL + PG  D+  T + GVN +  K +  ++SN SCTTNC+
Sbjct:   95 LPWRDLEVDLVLDCTGVFGCQADGLEHIKAGAKKVLFSHPGASDLDNTIIYGVNHETLKAEHNVVSNGSCTTNCI 169

HSP 2 Score: 54.299 bits (129), Expect = 4.583e-24
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 3 
Query:  228 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIF 389
            LKVAINGFGRIGRN LR  +   K   ++VVA+N+    +  +HLL+YD++ G F
Sbjct:    2 LKVAINGFGRIGRNVLRAVYESGKHQQIKVVAVNELAQPEAMAHLLQYDTSHGRF 56
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: E4PD_VIBVU (D-erythrose-4-phosphate dehydrogenase OS=Vibrio vulnificus GN=epd PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.583e-24
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:  478 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCL 699
            LPW DL +DLV++ TGVF  +    +HI+AGAKKVL + PG  D+  T + GVN +  K +  ++SN SCTTNC+
Sbjct:   95 LPWRDLEVDLVLDCTGVFGCQADGLEHIKAGAKKVLFSHPGASDLDNTIIYGVNHETLKAEHNVVSNGSCTTNCI 169

HSP 2 Score: 54.299 bits (129), Expect = 4.583e-24
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 3 
Query:  228 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIF 389
            LKVAINGFGRIGRN LR  +   K   ++VVA+N+    +  +HLL+YD++ G F
Sbjct:    2 LKVAINGFGRIGRNVLRAVYESGKHQQIKVVAVNELAQPEAMAHLLQYDTSHGRF 56
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: E4PD_ENTS8 (D-erythrose-4-phosphate dehydrogenase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.584e-24
Identity = 37/86 (43.02%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:  445 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCL 699
            I+++  R+   LPW  L +D+V++ TGV+  R     H++AGA+KVL + PG  D+  T V GVN +  + +  I+SNASCTTNC+
Sbjct:   75 IRLLHERDINALPWKALDVDVVLDCTGVYGSRADGIAHLEAGARKVLFSHPGGNDLDATVVYGVNEEELRAEHRIVSNASCTTNCI 160

HSP 2 Score: 56.6102 bits (135), Expect = 4.584e-24
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 3 
Query:  228 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVG 413
            L+VAINGFGRIGRN +R  +  GR+ + + VVAIN+       +HLLKYD++ G F  DV+  G
Sbjct:    3 LRVAINGFGRIGRNVVRALYESGRR-AEISVVAINELADAAGMAHLLKYDTSHGRFAWDVRQEG 65
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: E4PD_AERS4 (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=epd PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.585e-24
Identity = 41/86 (47.67%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:  445 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCL 699
            I + + ++P NLPW  LG+D+V++ TGVF  R  A  H+ AGA KVL + P   D+  T V GVN       E I+SNASCTTNC+
Sbjct:   74 ISLFAEQDPANLPWRALGVDVVLDCTGVFGSRADAELHLGAGAGKVLFSHPADADVDATIVYGVNHQVLTGRERIVSNASCTTNCV 159

HSP 2 Score: 51.6026 bits (122), Expect = 4.585e-24
Identity = 25/63 (39.68%), Postives = 40/63 (63.49%), Query Frame = 3 
Query:  228 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVG 413
            +K+AING+GRIGRN LR  +   +D  +++VAIN+    +   HL ++D++ G F   V+  G
Sbjct:    2 IKIAINGYGRIGRNVLRALYESGRDKNIKIVAINELAAPEAMVHLTRFDTSHGRFRYPVQLAG 64
The following BLAST results are available for this feature:
BLAST of CF417408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P_CHICK2.081e-2446.15Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus... [more]
G3PG_CRIFA2.704e-2453.41Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P_LENED2.707e-2447.13Glyceraldehyde-3-phosphate dehydrogenase OS=Lentin... [more]
E4PD_ERWCT2.707e-2449.33D-erythrose-4-phosphate dehydrogenase OS=Erwinia c... [more]
G3P_MOUSE2.708e-2446.15Glyceraldehyde-3-phosphate dehydrogenase OS=Mus mu... [more]
G3P_AQUAE2.990e-2461.36Glyceraldehyde-3-phosphate dehydrogenase OS=Aquife... [more]
E4PD_VIBVY4.583e-2449.33D-erythrose-4-phosphate dehydrogenase OS=Vibrio vu... [more]
E4PD_VIBVU4.583e-2449.33D-erythrose-4-phosphate dehydrogenase OS=Vibrio vu... [more]
E4PD_ENTS84.584e-2443.02D-erythrose-4-phosphate dehydrogenase OS=Enterobac... [more]
E4PD_AERS44.585e-2447.67D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-338 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417408 ID=CF417408; Name=CF417408; organism=Citrus sinensis; type=EST; length=701bp
GCATCATCCAGCAAATACCTATCATGGCTTCGGCCACTCTCTCTGTAGCC
AAATCAGCTCTTCAGGGAAATGGTAAGGGATTCTCAGAATTCTCAGGTCT
ACGCAACTCTGCAAGCCTTCCTTTTGGCAGGAAATCTTCTGATGACTTCC
ATTCAGTCATTGCTCTCCAGACCTCTGCTTTAGGAAGCAGCAGCAGCGGG
TACAGGAAGGTTGCTGCTCAGGCAAAGCTGAAGGTTGCAATCAATGGGTT
TGGTAGAATTGGTAGGAACTTCTTGAGGTGCTGGCACGGCCGCAAGGACT
CTCCACTTGAAGTCGTTGCCATCAATGACACCGGAGGTGTCAAGCAGGCC
TCTCACCTCCTCAAGTACGACTCCACCCTTGGCATCTTTGAAGCCGATGT
TAAACCAGTTGGTACTGATGGCATCTCTGTTGATGGCAAGGTCCATCCAG
GTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTGGGGGGACTTGGGCAT
CGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAGACAGAGAGGGTGCGG
GCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTTATTACAGCCCCCGGC
AAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCTTACAA
GCCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTGCCTTG
C
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