CF417408

Overview
NameCF417408
Unique NameCF417408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: E4PD_PHOPR (D-erythrose-4-phosphate dehydrogenase OS=Photobacterium profundum GN=epd PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.009e-23
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:  445 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCL 699
            I+++   +   LPW DL +D+V++ TGV+  RE    HI+AGAKKVL + P   DI  T + GVN      +  I+SN SCTTNC+
Sbjct:   80 IRILHQSDITLLPWHDLDVDIVLDCTGVYGSREDGLAHIKAGAKKVLFSHPAANDIDNTIIYGVNHKTLTSEHRIVSNGSCTTNCI 165

HSP 2 Score: 54.299 bits (129), Expect = 1.009e-23
Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = 3 
Query:  228 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTD 419
            LKVAINGFGRIGR+ LR  +   K   + VVA+N+    +  +HLL+YDS+ G F    KPV  D
Sbjct:    3 LKVAINGFGRIGRSVLRALYESGKHHHINVVAVNELAEPEAMAHLLQYDSSHGRF---FKPVSHD 64
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3P3_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis elegans GN=gpd-3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.711e-23
Identity = 45/86 (52.33%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:  445 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAY-KPDEPIISNASCTTNCL 699
            I+V ++R+P  + WG  G D V+E TGVF   E A  H++ GAKKV+I+AP   D P +VVGVN + Y   ++ IISNASCTTNCL
Sbjct:   79 IKVYNSRDPAEIQWGASGADYVVESTGVFTTIEKANAHLKGGAKKVIISAP-SADAPMFVVGVNHEKYDHANDHIISNASCTTNCL 163

HSP 2 Score: 41.2022 bits (95), Expect = 1.711e-23
Identity = 30/64 (46.88%), Postives = 36/64 (56.25%), Query Frame = 3 
Query:  225 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVG 413
            K  V INGFGRIGR  LR     KDS + VVA+ND    +    +L +YDST G F+  V   G
Sbjct:    3 KPSVGINGFGRIGRLVLRA-AVEKDS-VNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEG 64
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3P2_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis elegans GN=gpd-2 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.711e-23
Identity = 45/86 (52.33%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:  445 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAY-KPDEPIISNASCTTNCL 699
            I+V ++R+P  + WG  G D V+E TGVF   E A  H++ GAKKV+I+AP   D P +VVGVN + Y   ++ IISNASCTTNCL
Sbjct:   79 IKVYNSRDPAEIQWGASGADYVVESTGVFTTIEKANAHLKGGAKKVIISAP-SADAPMFVVGVNHEKYDHANDHIISNASCTTNCL 163

HSP 2 Score: 41.2022 bits (95), Expect = 1.711e-23
Identity = 30/64 (46.88%), Postives = 36/64 (56.25%), Query Frame = 3 
Query:  225 KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVG 413
            K  V INGFGRIGR  LR     KDS + VVA+ND    +    +L +YDST G F+  V   G
Sbjct:    3 KPSVGINGFGRIGRLVLRA-AVEKDS-VNVVAVNDPFISIDYMVYLFQYDSTHGRFKGTVAHEG 64
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: E4PD_VIBCH (D-erythrose-4-phosphate dehydrogenase OS=Vibrio cholerae GN=epd PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.711e-23
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:  478 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCL 699
            LPW DLG+DLV++ TGV+  +E   +HI AGAK VL + PG  D+  T + GVN +    +  I+SN SCTTNC+
Sbjct:   90 LPWRDLGVDLVLDCTGVYGCQEDGQQHIDAGAKLVLFSHPGASDLDNTIIYGVNHETLTAEHKIVSNGSCTTNCI 164

HSP 2 Score: 51.9878 bits (123), Expect = 1.711e-23
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 3 
Query:  228 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIF 389
            L+VAINGFGRIGRN LR  +   K   ++VVA+N+       +HLL+YD++ G F
Sbjct:    2 LRVAINGFGRIGRNVLRAVYESGKRDRIQVVAVNELAKPDAMAHLLQYDTSHGRF 56
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: E4PD_VIBC3 (D-erythrose-4-phosphate dehydrogenase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=epd PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.711e-23
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 1 
Query:  478 LPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCL 699
            LPW DLG+DLV++ TGV+  +E   +HI AGAK VL + PG  D+  T + GVN +    +  I+SN SCTTNC+
Sbjct:   90 LPWRDLGVDLVLDCTGVYGCQEDGQQHIDAGAKLVLFSHPGASDLDNTIIYGVNHETLTAEHKIVSNGSCTTNCI 164

HSP 2 Score: 51.9878 bits (123), Expect = 1.711e-23
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 3 
Query:  228 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIF 389
            L+VAINGFGRIGRN LR  +   K   ++VVA+N+       +HLL+YD++ G F
Sbjct:    2 LRVAINGFGRIGRNVLRAVYESGKRDRIQVVAVNELAKPDAMAHLLQYDTSHGRF 56
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3P_SERMA (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Serratia marcescens GN=gap PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.716e-23
Identity = 44/87 (50.57%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:  439 RSIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 699
            ++I+V + ++P NL W ++G+D+V E TG+F+  E A KHI AGAKKV++T P K   P +V G N D Y   + I+SNASCTTNCL
Sbjct:   55 KTIRVTAEKDPANLKWNEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDATPMFVRGANFDKY-AGQDIVSNASCTTNCL 140

HSP 2 Score: 34.6538 bits (78), Expect = 1.716e-23
Identity = 20/47 (42.55%), Postives = 29/47 (61.70%), Query Frame = 3 
Query:  300 SPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGK 440
            S +E+VAIND    +  +++LKYDST G F   V+ V    + V+GK
Sbjct:   10 SDIEIVAINDLLDAEYMAYMLKYDSTHGRFNGTVE-VKDGHLVVNGK 55
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3P_ENTAE (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Enterobacter aerogenes GN=gap PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.905e-23
Identity = 42/87 (48.28%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:  439 RSIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 699
            ++I+V + ++P NL W ++G+D+V E TG+F+  E A KHI AGAKKV++T P K + P +V G N + Y   + I+SN SCTTNCL
Sbjct:   55 KTIRVTAEKDPANLKWNEIGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVRGANFETY-AGQDIVSNRSCTTNCL 140

HSP 2 Score: 35.4242 bits (80), Expect = 2.905e-23
Identity = 20/50 (40.00%), Postives = 31/50 (62.00%), Query Frame = 3 
Query:  291 RKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGK 440
            +K S +E+V IND    +  +++LKYDST G F+  V+ V    + V+GK
Sbjct:    7 QKRSDIEIVGINDLLDAEYMAYMLKYDSTHGRFDGTVE-VKDGHLVVNGK 55
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: E4PD_ERWT9 (D-erythrose-4-phosphate dehydrogenase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.767e-23
Identity = 35/76 (46.05%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:  475 NLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCL 699
            +LPW +L +D+V++ TGV+  R     H++AGA+KVL + PG  D+  T V GVN     P+  ++SNASCTTNC+
Sbjct:   85 SLPWRELNVDIVLDCTGVYGSRADGEAHLKAGARKVLFSHPGGHDLDATVVYGVNEKELLPEHLLVSNASCTTNCI 160

HSP 2 Score: 53.5286 bits (127), Expect = 3.767e-23
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 3 
Query:  228 LKVAINGFGRIGRNFLRCWH--GRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 404
            +++AINGFGRIGRN LR  +  GR+ + +  VAIN+       +HLLKYD++ G F  DV+
Sbjct:    3 VRIAINGFGRIGRNVLRALYETGRR-AEISAVAINELADAAGMAHLLKYDTSHGRFAWDVR 62
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3P2_STAAR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MRSA252) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.769e-23
Identity = 45/87 (51.72%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:  445 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK-GDIPTYVVGVNADAYKPDE-PIISNASCTTNCL 699
            I++V++RNP NLPW +L ID+ I+ TG F   + A  HI+AGAKKVL+T P K G +   V GVN D    +   I SNASCTTNC+
Sbjct:   72 IKLVADRNPENLPWKELDIDIAIDATGKFNHGDKAIAHIKAGAKKVLLTGPSKGGHVQMVVKGVNDDQLDIEAFDIFSNASCTTNCI 158

HSP 2 Score: 45.4394 bits (106), Expect = 3.769e-23
Identity = 26/59 (44.07%), Postives = 36/59 (61.02%), Query Frame = 3 
Query:  234 VAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPV 410
            +AING GRIGR  LR     K+  L VVAIN +   +  +HL+ YD+T G +   V+P+
Sbjct:    5 IAINGMGRIGRMVLRIALQNKN--LNVVAINASYPPETIAHLINYDTTHGKYNLKVEPI 61
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3P_LYOSH (Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophyllum shimeji GN=GPD PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.769e-23
Identity = 43/90 (47.78%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:  430 LMARSIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 699
            +  + + V   +NP ++ WG  G D V+E TGVF   E A  H++ GAKKV+I+AP   D P +V+G N D Y P   +ISNASCTTNCL
Sbjct:   67 IQGKPVIVYGEKNPSDIKWGAAGRDYVVESTGVFTTVEKAEGHLKGGAKKVIISAP-SADAPMFVMGCNLDQYDPKYTVISNASCTTNCL 155

HSP 2 Score: 38.5058 bits (88), Expect = 3.769e-23
Identity = 24/60 (40.00%), Postives = 35/60 (58.33%), Query Frame = 3 
Query:  228 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVK 404
            + V INGFGRIGR   R  +   +  ++VVAIND    ++   ++ KYDS  G F+  V+
Sbjct:    2 VNVGINGFGRIGRIVFR--NALLNPKIQVVAINDPFINLEYMVYMFKYDSVHGRFKGTVE 59
The following BLAST results are available for this feature:
BLAST of CF417408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
E4PD_PHOPR1.009e-2344.19D-erythrose-4-phosphate dehydrogenase OS=Photobact... [more]
G3P3_CAEEL1.711e-2352.33Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P2_CAEEL1.711e-2352.33Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
E4PD_VIBCH1.711e-2349.33D-erythrose-4-phosphate dehydrogenase OS=Vibrio ch... [more]
E4PD_VIBC31.711e-2349.33D-erythrose-4-phosphate dehydrogenase OS=Vibrio ch... [more]
G3P_SERMA1.716e-2350.57Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_ENTAE2.905e-2348.28Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
E4PD_ERWT93.767e-2346.05D-erythrose-4-phosphate dehydrogenase OS=Erwinia t... [more]
G3P2_STAAR3.769e-2351.72Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P_LYOSH3.769e-2347.78Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophy... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-338 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417408 ID=CF417408; Name=CF417408; organism=Citrus sinensis; type=EST; length=701bp
GCATCATCCAGCAAATACCTATCATGGCTTCGGCCACTCTCTCTGTAGCC
AAATCAGCTCTTCAGGGAAATGGTAAGGGATTCTCAGAATTCTCAGGTCT
ACGCAACTCTGCAAGCCTTCCTTTTGGCAGGAAATCTTCTGATGACTTCC
ATTCAGTCATTGCTCTCCAGACCTCTGCTTTAGGAAGCAGCAGCAGCGGG
TACAGGAAGGTTGCTGCTCAGGCAAAGCTGAAGGTTGCAATCAATGGGTT
TGGTAGAATTGGTAGGAACTTCTTGAGGTGCTGGCACGGCCGCAAGGACT
CTCCACTTGAAGTCGTTGCCATCAATGACACCGGAGGTGTCAAGCAGGCC
TCTCACCTCCTCAAGTACGACTCCACCCTTGGCATCTTTGAAGCCGATGT
TAAACCAGTTGGTACTGATGGCATCTCTGTTGATGGCAAGGTCCATCCAG
GTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTGGGGGGACTTGGGCAT
CGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAGACAGAGAGGGTGCGG
GCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTTATTACAGCCCCCGGC
AAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCTTACAA
GCCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTGCCTTG
C
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