CF417408

Overview
NameCF417408
Unique NameCF417408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3P_THEMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermotoga maritima GN=gap PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.094e-21
Identity = 50/87 (57.47%), Postives = 62/87 (71.26%), Query Frame = 1
Query:  439 RSIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 699
            + I+V +  +P  LPW DLG+D VIE TGVF +RE A  H+QAGAKKV+ITAP KG+  T V+G N D  KP+  IIS ASCTTN +
Sbjct:   71 KEIKVFAEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAKGEDITVVIGCNEDQLKPEHTIISCASCTTNSI 157          
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3PA_SINAL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Sinapis alba GN=GAPA PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.094e-21
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 1
Query:  535 DREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 699
            DREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNA+ Y  ++ IISNASCTTNCL
Sbjct:    1 DREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNAELYSHEDTIISNASCTTNCL 55          
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3P1_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena sp. (strain PCC 7120) GN=gap1 PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 3.094e-21
Identity = 51/88 (57.95%), Postives = 63/88 (71.59%), Query Frame = 1
Query:  445 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD--IPTYVVGVNADAYKPDEP-IISNASCTTNCL 699
            I  VS RNP  LPWG LG D V+E TG+F D EGA KH+QAGA++V+I+AP K    + T +VGVN D + P +  I+SNASCTTNCL
Sbjct:   73 IPCVSVRNPAELPWGKLGADYVVESTGLFTDSEGASKHLQAGARRVIISAPTKDPDRVRTLLVGVNHDLFDPSKDLIVSNASCTTNCL 160          
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3P_SCHMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.306e-21
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 1
Query:  445 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAG-AKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 699
            I V   R+P N+PW   G + V+E TGVF   + A  HI+   AKKV+I+AP   D P +VVGVN ++Y+    ++SNASCTTNCL
Sbjct:   74 ISVHCERDPANIPWDKDGAEYVVESTGVFTTIDKAQAHIKNNRAKKVIISAPS-ADAPMFVVGVNENSYEKSMSVVSNASCTTNCL 158          

HSP 2 Score: 40.0466 bits (92), Expect = 3.306e-21
Identity = 27/75 (36.00%), Postives = 43/75 (57.33%), Query Frame = 3
Query:  222 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKV 443
            ++ KV INGFGRIGR  LR       + ++VV++ND    ++   +++K DST G F  +V       + V+GK+
Sbjct:    2 SRAKVGINGFGRIGRLVLRA--AFLKNTVDVVSVNDPFIDLEYMVYMIKRDSTHGTFPGEVS-TENGKLKVNGKL 73          
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3P_BOLED (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Boletus edulis GN=GPD PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.041e-21
Identity = 47/91 (51.65%), Postives = 62/91 (68.13%), Query Frame = 1
Query:  427 LLMARSIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 699
            ++  ++I V + R+P N+PWG +G   V+E TGVF   E A  H++ GAKKV+I+AP   D P +V GVN DAY P   +ISNASCTTNCL
Sbjct:   46 VINGKAITVFAERDPANIPWGTVGAQYVVESTGVFTTIEKASAHLKGGAKKVIISAP-SSDAPMFVCGVNLDAYDPKHTVISNASCTTNCL 135          
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3P1_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces marxianus GN=GAP1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.894e-21
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 1
Query:  427 LLMARSIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 699
            ++  + + V   ++P  LPWG LG+D+ ++ TGVF + + A KHI AGAKKV+ITAP K   P +VVGVN D Y   E I+SNASCTTNCL
Sbjct:   66 IINGKKVAVFQEKDPATLPWGKLGVDIAVDSTGVFKELDSAQKHIDAGAKKVVITAPSK-TAPMFVVGVNEDKYN-GEKIVSNASCTTNCL 154          
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3PT_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Homo sapiens GN=GAPDHS PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 7.246e-21
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  445 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCL 699
            I V   + P  +PW  +G   V+E TGV++  + A  HI AGA++V+I+AP   D P +V+GVN + Y P    I+SNASCTTNCL
Sbjct:  145 ISVYQCKEPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSP-DAPMFVMGVNENDYNPGSMNIVSNASCTTNCL 229          

HSP 2 Score: 41.2022 bits (95), Expect = 7.246e-21
Identity = 26/68 (38.24%), Postives = 39/68 (57.35%), Query Frame = 3
Query:  204 RKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVK 404
            + V+   +L V INGFGRIGR  LR      +  ++VVA+ND     +   ++ KYDST G ++  V+
Sbjct:   68 KMVSVARELTVGINGFGRIGRLVLRAC---MEKGVKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVE 132          
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3PP_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGP PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.003e-21
Identity = 47/86 (54.65%), Postives = 63/86 (73.26%), Query Frame = 1
Query:  445 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCL 699
            I+V++ RNP  LPWG+LG+D+V+E TG+F  +E A  H++ GAKKV+I+APG  D+  T V GVN    K  + +ISNASCTTNCL
Sbjct:   75 IRVLAQRNPAELPWGELGVDVVMECTGLFTSKEKASAHLKGGAKKVIISAPGGKDVDATIVYGVNHGVLKATDTVISNASCTTNCL 160          
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3PC_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGC PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.003e-21
Identity = 47/86 (54.65%), Postives = 63/86 (73.26%), Query Frame = 1
Query:  445 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCL 699
            I+V++ RNP  LPWG+LG+D+V+E TG+F  +E A  H++ GAKKV+I+APG  D+  T V GVN    K  + +ISNASCTTNCL
Sbjct:   75 IRVLAQRNPAELPWGELGVDVVMECTGLFTSKEKASAHLRGGAKKVIISAPGGKDVDATIVYGVNHGVLKATDTVISNASCTTNCL 160          
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3P2_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agaricus bisporus GN=gpd2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.003e-21
Identity = 47/87 (54.02%), Postives = 60/87 (68.97%), Query Frame = 1
Query:  439 RSIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 699
            R ++V + R+P  +PWG +G D V+E TGVF   + A  H++ GAKKV+I+AP   D P YV GVN D Y P + IISNASCTTNCL
Sbjct:   70 RPMKVFAERDPAAIPWGSVGADYVVESTGVFTTIDKASAHLKGGAKKVVISAP-SADAPMYVCGVNLDKYNPKDTIISNASCTTNCL 155          
The following BLAST results are available for this feature:
BLAST of CF417408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P_THEMA3.094e-2157.47Glyceraldehyde-3-phosphate dehydrogenase OS=Thermo... [more]
G3PA_SINAL3.094e-2187.27Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P1_ANASP3.094e-2157.95Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P_SCHMA3.306e-2148.84Glyceraldehyde-3-phosphate dehydrogenase OS=Schist... [more]
G3P_BOLED4.041e-2151.65Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P1_KLUMA6.894e-2152.75Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3PT_HUMAN7.246e-2146.51Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PP_RALEH9.003e-2154.65Glyceraldehyde-3-phosphate dehydrogenase, plasmid ... [more]
G3PC_RALEH9.003e-2154.65Glyceraldehyde-3-phosphate dehydrogenase, chromoso... [more]
G3P2_AGABI9.003e-2154.02Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agar... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-338 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417408 ID=CF417408; Name=CF417408; organism=Citrus sinensis; type=EST; length=701bp
GCATCATCCAGCAAATACCTATCATGGCTTCGGCCACTCTCTCTGTAGCC
AAATCAGCTCTTCAGGGAAATGGTAAGGGATTCTCAGAATTCTCAGGTCT
ACGCAACTCTGCAAGCCTTCCTTTTGGCAGGAAATCTTCTGATGACTTCC
ATTCAGTCATTGCTCTCCAGACCTCTGCTTTAGGAAGCAGCAGCAGCGGG
TACAGGAAGGTTGCTGCTCAGGCAAAGCTGAAGGTTGCAATCAATGGGTT
TGGTAGAATTGGTAGGAACTTCTTGAGGTGCTGGCACGGCCGCAAGGACT
CTCCACTTGAAGTCGTTGCCATCAATGACACCGGAGGTGTCAAGCAGGCC
TCTCACCTCCTCAAGTACGACTCCACCCTTGGCATCTTTGAAGCCGATGT
TAAACCAGTTGGTACTGATGGCATCTCTGTTGATGGCAAGGTCCATCCAG
GTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTGGGGGGACTTGGGCAT
CGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAGACAGAGAGGGTGCGG
GCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTTATTACAGCCCCCGGC
AAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCTTACAA
GCCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTGCCTTG
C
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