CF417408

Overview
NameCF417408
Unique NameCF417408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417408_ssr186 microsatellite CF417408_ssr186:186..197. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10901 contig Csv1_Contig10901:197..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3PT_DANRE (Glyceraldehyde 3-phosphate dehydrogenase, testis-specific OS=Danio rerio GN=gapdhs PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.317e-18
Identity = 45/88 (51.14%), Postives = 57/88 (64.77%), Query Frame = 1
Query:  439 RSIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCL 699
            ++I V     P  +PWGD G   V+E TGVF+  E A  HIQ GAK+V+++AP   D P +V+GVN D Y P    I+SNASCTTNCL
Sbjct:   71 QAISVFQCMKPAEIPWGDAGALYVVESTGVFLSIEKASAHIQGGAKRVVVSAPSP-DAPMFVMGVNQDKYDPSSMTIVSNASCTTNCL 157          
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: E4PD_PSEHT (D-erythrose-4-phosphate dehydrogenase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=epd PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.711e-17
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 1
Query:  442 SIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCL 699
            +I +    NP  LPW  LG+D+V+E TGV+  RE A  H+ AGAKKVL + P   D+  T V G+N D  KP+  I+SN SCTTNC+
Sbjct:   74 AIALFCEPNPAELPWKTLGVDVVLECTGVYHSREHAQLHLTAGAKKVLFSHPADNDVDATIVYGINDDELKPEHTIVSNGSCTTNCV 160          
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3P_PLESA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pleurotus sajor-caju GN=GPD PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.997e-16
Identity = 40/91 (43.96%), Postives = 59/91 (64.84%), Query Frame = 1
Query:  427 LLMARSIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 699
            ++  + I + + ++P N+PWG +G D V+E TGVF   + A  H++ G +KV+I+AP   D P +V GVN + Y P   +ISNAS TTNCL
Sbjct:   66 IVEGKPIHIFAEKDPANIPWGSVGADYVVESTGVFTTIDKASAHLK-GGEKVVISAP-SADAPMFVCGVNLETYDPKYKVISNASSTTNCL 154          
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3P_HELPY (Glyceraldehyde-3-phosphate dehydrogenase OS=Helicobacter pylori GN=gapA PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 3.454e-16
Identity = 31/73 (42.47%), Postives = 48/73 (65.75%), Query Frame = 1
Query:  496 GIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-----IPTYVVGVNADAYKPDEPIISNASCTTNCL 699
            G+D++IE +G F++ +    ++  GAKKVL++AP  G+      PT V GVN   Y+ ++ I+SNASCTTN +
Sbjct:   85 GVDVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFCYQ-NQAIVSNASCTTNAI 156          

HSP 2 Score: 47.3654 bits (111), Expect = 3.454e-16
Identity = 26/61 (42.62%), Postives = 38/61 (62.30%), Query Frame = 3
Query:  228 LKVAINGFGRIGRNFLRCWHGRKDS--PLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 404
            +K+ INGFGRIGR  LR    R D+   LEV+ IND    +  ++LL++DS  G+   +V+
Sbjct:    1 MKIFINGFGRIGRCVLRAILERNDTNPKLEVIGINDPANWEILAYLLEHDSVHGLLPKEVR 61          
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3P_HELPJ (Glyceraldehyde-3-phosphate dehydrogenase OS=Helicobacter pylori J99 GN=gapA PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 5.836e-16
Identity = 30/73 (41.10%), Postives = 47/73 (64.38%), Query Frame = 1
Query:  496 GIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-----IPTYVVGVNADAYKPDEPIISNASCTTNCL 699
            G+ ++IE +G F++ +    ++  GAKKVL++AP  G+      PT V GVN   Y+ ++ I+SNASCTTN +
Sbjct:   85 GVGVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFLYQ-NQAIVSNASCTTNAI 156          

HSP 2 Score: 49.6766 bits (117), Expect = 5.836e-16
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 3
Query:  228 LKVAINGFGRIGRNFLRCWHGRKDS--PLEVVAINDTGGVKQASHLLKYDSTLGIFEADVK 404
            +K+ INGFGRIGR  LR    R D+   LEV+ IND    +  ++LL++DST G+   +V+
Sbjct:    1 MKIFINGFGRIGRCVLRAILERNDTNPQLEVIGINDPANWEILAYLLEHDSTHGLLNKEVR 61          
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: E4PD_YERE8 (D-erythrose-4-phosphate dehydrogenase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=epd PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 1
Query:  445 IQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDI-PTYVVGVNADAYKPDEPIISNASCTTNCL 699
            I+++       LPWG+LGID+V++ +GV+  R     H+ +GAKKVL   PG  D+  T V GVN    + D  I+SNASCTTNC+
Sbjct:   75 IRLIHQPEIEQLPWGELGIDVVLDCSGVYGSRADGEAHLTSGAKKVLFAHPGGHDLDATVVYGVNHQDLQADHRIVSNASCTTNCI 160          
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3P_MELGA (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Meleagris gallopavo GN=GAPDH PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 1
Query:  502 DLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 699
            + V+E TGVF   E AG H++ GAK+V+I+AP   D P +V+GVN + Y     I+SNA CTTNCL
Sbjct:    2 EYVVESTGVFTTMEKAGAHLKGGAKRVIISAPS-ADAPMFVMGVNHEKYDKSLKIVSNALCTTNCL 66          
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3P_LACDE (Glyceraldehyde-3-phosphate dehydrogenase OS=Lactobacillus delbrueckii subsp. bulgaricus GN=gap PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.303e-11
Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = 1
Query:  439 RSIQVVSNRNPVNLPW-GDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 699
            +  +V +     N+PW  + G+D V+E TG +  +  +  H+ AGAK+VLI+AP   D+ T V  VN D    D+ I+S  SCTTN L
Sbjct:   74 KKYRVYAEPQAQNIPWVKNDGVDFVLECTGFYTSKAKSQAHLDAGAKRVLISAPAGNDLKTIVYSVNQDTLTADDTIVSAGSCTTNSL 161          
The following BLAST results are available for this feature:
BLAST of CF417408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3PT_DANRE9.317e-1851.14Glyceraldehyde 3-phosphate dehydrogenase, testis-s... [more]
E4PD_PSEHT2.711e-1749.43D-erythrose-4-phosphate dehydrogenase OS=Pseudoalt... [more]
G3P_PLESA2.997e-1643.96Glyceraldehyde-3-phosphate dehydrogenase OS=Pleuro... [more]
G3P_HELPY3.454e-1642.47Glyceraldehyde-3-phosphate dehydrogenase OS=Helico... [more]
G3P_HELPJ5.836e-1641.10Glyceraldehyde-3-phosphate dehydrogenase OS=Helico... [more]
E4PD_YERE84.785e-1445.35D-erythrose-4-phosphate dehydrogenase OS=Yersinia ... [more]
G3P_MELGA4.479e-1251.52Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_LACDE1.303e-1139.77Glyceraldehyde-3-phosphate dehydrogenase OS=Lactob... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-338 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417408 ID=CF417408; Name=CF417408; organism=Citrus sinensis; type=EST; length=701bp
GCATCATCCAGCAAATACCTATCATGGCTTCGGCCACTCTCTCTGTAGCC
AAATCAGCTCTTCAGGGAAATGGTAAGGGATTCTCAGAATTCTCAGGTCT
ACGCAACTCTGCAAGCCTTCCTTTTGGCAGGAAATCTTCTGATGACTTCC
ATTCAGTCATTGCTCTCCAGACCTCTGCTTTAGGAAGCAGCAGCAGCGGG
TACAGGAAGGTTGCTGCTCAGGCAAAGCTGAAGGTTGCAATCAATGGGTT
TGGTAGAATTGGTAGGAACTTCTTGAGGTGCTGGCACGGCCGCAAGGACT
CTCCACTTGAAGTCGTTGCCATCAATGACACCGGAGGTGTCAAGCAGGCC
TCTCACCTCCTCAAGTACGACTCCACCCTTGGCATCTTTGAAGCCGATGT
TAAACCAGTTGGTACTGATGGCATCTCTGTTGATGGCAAGGTCCATCCAG
GTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTGGGGGGACTTGGGCAT
CGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAGACAGAGAGGGTGCGG
GCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTTATTACAGCCCCCGGC
AAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCTTACAA
GCCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTGCCTTG
C
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