CF417408

Overview
NameCF417408
Unique NameCF417408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 4.513e-28
Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:  439 RSIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 699
            + + V   RNP ++PWG+ G D V+E TGVF D++ A  H++ GAKKV+I+AP K D P +VVGVN   YK D  I+SNASCTTNCL
Sbjct:   76 KPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK-DAPMFVVGVNEHEYKSDLNIVSNASCTTNCL 161

HSP 2 Score: 41.5874 bits (96), Expect = 4.513e-28
Identity = 25/57 (43.86%), Postives = 34/57 (59.65%), Query Frame = 3 
Query:  216 AQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLG 383
            A  K+K+ INGFGRIGR   R    R D  +E+VA+ND     +  +++ KYDS  G
Sbjct:    2 ADKKIKIGINGFGRIGRLVARVILQRND--VELVAVNDPFITTEYMTYMFKYDSVHG 56
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3P1_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhizomucor racemosus GN=GPD1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.648e-28
Identity = 46/86 (53.49%), Postives = 60/86 (69.77%), Query Frame = 1 
Query:  442 SIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 699
            +I V + R+P ++PWG  G D V+E TGVF   E A  H++ GAKKV+I+AP   D P +V GVN +AYK +  +ISNASCTTNCL
Sbjct:   72 AIAVSAERDPTSIPWGSAGADYVVESTGVFTTTEAASAHLKGGAKKVIISAP-SADAPMFVCGVNLEAYKSEYKVISNASCTTNCL 156

HSP 2 Score: 44.669 bits (104), Expect = 7.648e-28
Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = 3 
Query:  228 LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVK 404
            ++V INGFGRIGR  LR     KD  ++VVAIND    +    ++LKYD+  G F+  V+
Sbjct:    3 VQVGINGFGRIGRIVLRATESNKD--VQVVAINDPFIPLDYMVYMLKYDTVHGRFDGSVE 60
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 9.957e-28
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:  427 LLMARSIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 699
            ++  +SI V + ++P N+PWG  G   V+E TGVF   + A  HI+ GAKKV+I+AP   D P YV GVN DAY P   ++SNASCTTNCL
Sbjct:   68 IVNGKSIAVFAEKDPSNIPWGQAGAHYVVESTGVFTTIDKASAHIKGGAKKVVISAP-SADAPMYVCGVNLDAYDPKAQVVSNASCTTNCL 157

HSP 2 Score: 43.8986 bits (102), Expect = 9.957e-28
Identity = 30/75 (40.00%), Postives = 44/75 (58.67%), Query Frame = 3 
Query:  222 AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDG-ISVDGK 440
            +++ + INGFGRIGR   R  +    +   VVAIND    ++   ++LKYDST G+F  D+     DG + V+GK
Sbjct:    2 SQVNIGINGFGRIGRIVFR--NSVVHNTANVVAINDPFIDLEYMVYMLKYDSTHGVFNGDIST--KDGKLIVNGK 72
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 9.957e-28
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:  439 RSIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 699
            + I+    R+P N+PW D G + ++E TGVF   E A  H + GAKKV+I+AP   D P YV+GVN D Y     +ISNASCTTNCL
Sbjct:   71 KRIKFYQERDPANIPWKDSGAEYIVESTGVFTTTEKASAHFKGGAKKVIISAP-SADAPMYVMGVNEDTY-AGANVISNASCTTNCL 155

HSP 2 Score: 53.5286 bits (127), Expect = 9.957e-28
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 3 
Query:  231 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGK 440
            KV INGFGRIGR  LR  +  +   +EVVA+ND       A ++ KYDST G F+ D+K  G D + +DGK
Sbjct:    4 KVGINGFGRIGRVVLR--NALETGAVEVVALNDPFIEPHYAEYMFKYDSTHGRFKGDIKVDGKD-LVIDGK 71
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: E4PD_ECOUT (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=epd PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.296e-27
Identity = 44/87 (50.57%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:  442 SIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVV-GVNADAYKPDEPIISNASCTTNCL 699
            +I+V+  R+  +LPW +LG+D+V++ TGV+  RE    HI AGAKKVL + PG  D+ T VV GVN D  + +  I+SNASCTTNC+
Sbjct:   74 AIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDTTVVYGVNQDQLRAEHRIVSNASCTTNCI 160

HSP 2 Score: 53.9138 bits (128), Expect = 1.296e-27
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 3 
Query:  228 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP------VGTDGISV 431
            ++VAINGFGRIGRN +R  +   + + + VVAIN+       +HLLKYD++ G F  +V+       VG D I V
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRV 77
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: E4PD_ECOK1 (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=epd PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.296e-27
Identity = 44/87 (50.57%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:  442 SIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVV-GVNADAYKPDEPIISNASCTTNCL 699
            +I+V+  R+  +LPW +LG+D+V++ TGV+  RE    HI AGAKKVL + PG  D+ T VV GVN D  + +  I+SNASCTTNC+
Sbjct:   74 AIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDTTVVYGVNQDQLRAEHRIVSNASCTTNCI 160

HSP 2 Score: 53.9138 bits (128), Expect = 1.296e-27
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 3 
Query:  228 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP------VGTDGISV 431
            ++VAINGFGRIGRN +R  +   + + + VVAIN+       +HLLKYD++ G F  +V+       VG D I V
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRV 77
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: E4PD_ECO81 (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O81 (strain ED1a) GN=epd PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.296e-27
Identity = 44/87 (50.57%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:  442 SIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVV-GVNADAYKPDEPIISNASCTTNCL 699
            +I+V+  R+  +LPW +LG+D+V++ TGV+  RE    HI AGAKKVL + PG  D+ T VV GVN D  + +  I+SNASCTTNC+
Sbjct:   74 AIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDTTVVYGVNQDQLRAEHRIVSNASCTTNCI 160

HSP 2 Score: 53.9138 bits (128), Expect = 1.296e-27
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 3 
Query:  228 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP------VGTDGISV 431
            ++VAINGFGRIGRN +R  +   + + + VVAIN+       +HLLKYD++ G F  +V+       VG D I V
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRV 77
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: E4PD_ECO45 (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=epd PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.296e-27
Identity = 44/87 (50.57%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:  442 SIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVV-GVNADAYKPDEPIISNASCTTNCL 699
            +I+V+  R+  +LPW +LG+D+V++ TGV+  RE    HI AGAKKVL + PG  D+ T VV GVN D  + +  I+SNASCTTNC+
Sbjct:   74 AIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDTTVVYGVNQDQLRAEHRIVSNASCTTNCI 160

HSP 2 Score: 53.9138 bits (128), Expect = 1.296e-27
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 3 
Query:  228 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP------VGTDGISV 431
            ++VAINGFGRIGRN +R  +   + + + VVAIN+       +HLLKYD++ G F  +V+       VG D I V
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRV 77
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: E4PD_ECO27 (D-erythrose-4-phosphate dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=epd PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.296e-27
Identity = 44/87 (50.57%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:  442 SIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVV-GVNADAYKPDEPIISNASCTTNCL 699
            +I+V+  R+  +LPW +LG+D+V++ TGV+  RE    HI AGAKKVL + PG  D+ T VV GVN D  + +  I+SNASCTTNC+
Sbjct:   74 AIRVLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPGSNDLDTTVVYGVNQDQLRAEHRIVSNASCTTNCI 160

HSP 2 Score: 53.9138 bits (128), Expect = 1.296e-27
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 3 
Query:  228 LKVAINGFGRIGRNFLRC-WHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKP------VGTDGISV 431
            ++VAINGFGRIGRN +R  +   + + + VVAIN+       +HLLKYD++ G F  +V+       VG D I V
Sbjct:    3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRV 77
[Close]
BLAST of CF417408 vs. ExPASy Swiss-Prot
Match: G3P_CRYCU (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus curvatus GN=GPD PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.296e-27
Identity = 47/91 (51.65%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:  427 LLMARSIQVVSNRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCL 699
            ++  + I V   R+P  +PWG  G D V+E TGVF   E A  H++ GAKKV+I+AP   D P +V GVN +AYKP+  +ISNASCTTNCL
Sbjct:   67 VIEGKPISVFGERDPAAIPWGKAGADYVVESTGVFTTIEKASLHLKGGAKKVIISAP-SADAPMFVCGVNLEAYKPEYEVISNASCTTNCL 156

HSP 2 Score: 43.5134 bits (101), Expect = 1.296e-27
Identity = 31/72 (43.06%), Postives = 43/72 (59.72%), Query Frame = 3 
Query:  231 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTG-GVKQASHLLKYDSTLGIFEADVKPVGTDG-ISVDGK 440
            KV INGFGRIGR  LR  +  +   ++VVAIND    +    ++ KYDST G F+  V+    DG + ++GK
Sbjct:    4 KVGINGFGRIGRIVLR--NALEHGDIDVVAINDPFIDLDYMVYMFKYDSTHGRFKGKVET--KDGKLVIEGK 71
The following BLAST results are available for this feature:
BLAST of CF417408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3PC_SINAL4.513e-2855.17Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_RHIRA7.648e-2853.49Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhiz... [more]
G3P_USTMA9.957e-2851.65Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]
G3P1_TRIKO9.957e-2850.57Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric... [more]
E4PD_ECOUT1.296e-2750.57D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECOK11.296e-2750.57D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECO811.296e-2750.57D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECO451.296e-2750.57D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
E4PD_ECO271.296e-2750.57D-erythrose-4-phosphate dehydrogenase OS=Escherich... [more]
G3P_CRYCU1.296e-2751.65Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-338 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417408 ID=CF417408; Name=CF417408; organism=Citrus sinensis; type=EST; length=701bp
GCATCATCCAGCAAATACCTATCATGGCTTCGGCCACTCTCTCTGTAGCC
AAATCAGCTCTTCAGGGAAATGGTAAGGGATTCTCAGAATTCTCAGGTCT
ACGCAACTCTGCAAGCCTTCCTTTTGGCAGGAAATCTTCTGATGACTTCC
ATTCAGTCATTGCTCTCCAGACCTCTGCTTTAGGAAGCAGCAGCAGCGGG
TACAGGAAGGTTGCTGCTCAGGCAAAGCTGAAGGTTGCAATCAATGGGTT
TGGTAGAATTGGTAGGAACTTCTTGAGGTGCTGGCACGGCCGCAAGGACT
CTCCACTTGAAGTCGTTGCCATCAATGACACCGGAGGTGTCAAGCAGGCC
TCTCACCTCCTCAAGTACGACTCCACCCTTGGCATCTTTGAAGCCGATGT
TAAACCAGTTGGTACTGATGGCATCTCTGTTGATGGCAAGGTCCATCCAG
GTTGTTTCTAACCGCAACCCCGTCAATCTCCCCTGGGGGGACTTGGGCAT
CGACCTTGTGATTGAAGGGACAGGAGTGTTTGTAGACAGAGAGGGTGCGG
GCAAGCACATTCAGGCTGGTGCCAAGAAAGTACTTATTACAGCCCCCGGC
AAGGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCTTACAA
GCCAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTGCCTTG
C
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