CF417413 | Citrus Genome Database

Overview


Name	CF417413
Unique Name	CF417413
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	695

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_BORPA (Fructose-1,6-bisphosphatase class 1 OS=Bordetella parapertussis GN=fbp PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.146e-13
Identity = 29/69 (42.03%), Postives = 40/69 (57.97%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESY-SGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLDV+SNE+        G    +ASEE +    +   Y  G Y+++FDPLDGSSNID  VS G
Sbjct:   60 QGEVQKKLDVLSNEILLEANEWGGHLAAMASEEMETIHLIPNRYPKGEYLLLFDPLDGSSNIDVNVSIG 128

HSP 2 Score: 41.2022 bits (95), Expect = 1.146e-13
Identity = 20/63 (31.75%), Postives = 39/63 (61.90%), Query Frame = 2

Query:  245 ETLTNWLLKQEQSG-VIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            +TLT +L++Q++S   +  E+ +++  ++ ACK I+  V +  +  + G   + NVQGE QK+
Sbjct:    4 KTLTQYLVEQQRSAQALGPEVRLLIEVVARACKAISHAVSKGALGGVLGSLESENVQGEVQKK 66

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_BORBR (Fructose-1,6-bisphosphatase class 1 OS=Bordetella bronchiseptica GN=fbp PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.146e-13
Identity = 29/69 (42.03%), Postives = 40/69 (57.97%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESY-SGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLDV+SNE+        G    +ASEE +    +   Y  G Y+++FDPLDGSSNID  VS G
Sbjct:   60 QGEVQKKLDVLSNEILLEANEWGGHLAAMASEEMETIHLIPNRYPKGEYLLLFDPLDGSSNIDVNVSIG 128

HSP 2 Score: 41.2022 bits (95), Expect = 1.146e-13
Identity = 20/63 (31.75%), Postives = 39/63 (61.90%), Query Frame = 2

Query:  245 ETLTNWLLKQEQSG-VIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            +TLT +L++Q++S   +  E+ +++  ++ ACK I+  V +  +  + G   + NVQGE QK+
Sbjct:    4 KTLTQYLVEQQRSAQALGPEVRLLIEVVARACKAISHAVSKGALGGVLGSLESENVQGEVQKK 66

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_ALISL (Fructose-1,6-bisphosphatase class 1 OS=Aliivibrio salmonicida (strain LFI1238) GN=fbp PE=3 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.146e-13
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 3

Query:  423 RRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGN--YIVVFDPLDGSSNIDAAVSTG 614
            ++KLD+ +N+ F   L +  +   +ASEEED  VA  +  + N  Y+V+ DPLDGSSNID  VS G
Sbjct:   65 QQKLDIYANDKFKAALENRDQVCGVASEEEDEAVAFNKELNKNAKYVVLMDPLDGSSNIDVNVSVG 130

HSP 2 Score: 40.4318 bits (93), Expect = 1.146e-13
Identity = 22/65 (33.85%), Postives = 37/65 (56.92%), Query Frame = 2

Query:  239 EIETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            EI TL  +++ KQ        EL+ ++ SI  A K +   + +AG+ ++TG  G  N+QGE Q++
Sbjct:    3 EIRTLGEFIVAKQHDFPHASGELSSLIGSIKLAAKIVNREINKAGLVDITGASGDENIQGEQQQK 67

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_ENTS8 (Fructose-1,6-bisphosphatase class 1 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=fbp PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 1.146e-13
Identity = 31/68 (45.59%), Postives = 40/68 (58.82%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +  T++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGETQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 38.891 bits (89), Expect = 1.146e-13
Identity = 22/64 (34.38%), Postives = 37/64 (57.81%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  G  NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGVENVQGETQQK 64

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_KLEP7 (Fructose-1,6-bisphosphatase class 1 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=fbp PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.146e-13
Identity = 31/68 (45.59%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     LR+      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALRARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 39.6614 bits (91), Expect = 1.146e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_KLEP3 (Fructose-1,6-bisphosphatase class 1 OS=Klebsiella pneumoniae (strain 342) GN=fbp PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.146e-13
Identity = 31/68 (45.59%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     LR+      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALRARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 39.6614 bits (91), Expect = 1.146e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_ENT38 (Fructose-1,6-bisphosphatase class 1 OS=Enterobacter sp. (strain 638) GN=fbp PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 1.146e-13
Identity = 31/68 (45.59%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     LR+      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALRARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 39.6614 bits (91), Expect = 1.146e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_VIBSL (Fructose-1,6-bisphosphatase class 1 OS=Vibrio splendidus (strain LGP32) GN=fbp PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.489e-13
Identity = 30/66 (45.45%), Postives = 42/66 (63.64%), Query Frame = 3

Query:  423 RRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGN--YIVVFDPLDGSSNIDAAVSTG 614
            ++KLD+ +N+ F   L +  +   +ASEEED  VA  +  + N  Y+V+ DPLDGSSNID  VS G
Sbjct:   65 QQKLDLYANDKFKAALEARDQVCGVASEEEDEAVAFNKELNKNAKYVVLMDPLDGSSNIDVNVSVG 130

HSP 2 Score: 40.817 bits (94), Expect = 1.489e-13
Identity = 23/65 (35.38%), Postives = 39/65 (60.00%), Query Frame = 2

Query:  239 EIETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            E+ TL  +++ KQ        +L+ +LSSI  A K +   + +AG+ ++TG  G  NVQGE+Q++
Sbjct:    3 EMRTLGEFIVEKQSDFPHASGDLSSLLSSIRLAAKIVNREINKAGLVDITGAVGTDNVQGEEQQK 67

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_CHLPB (Fructose-1,6-bisphosphatase class 1 OS=Chlorobium phaeobacteroides (strain BS1) GN=fbp PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.489e-13
Identity = 27/63 (42.86%), Postives = 41/63 (65.08%), Query Frame = 3

Query:  426 RKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +KLD+ +N+   N +   GR  ++ SEE +  +   ++ SG Y+++FDPLDGSSNID  VS G
Sbjct:   66 KKLDLFANDKIINAIGQHGRFALMGSEENEGTIIPPKNESGKYVLLFDPLDGSSNIDVNVSVG 128

HSP 2 Score: 36.965 bits (84), Expect = 1.489e-13
Identity = 18/44 (40.91%), Postives = 28/44 (63.64%), Query Frame = 2

Query:  299 ELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ELT +L  ++ A K +   V RAG+ ++ G+ G  NVQGE+ K+
Sbjct:   24 ELTDLLYDVAFAAKLVRREVVRAGLVDILGMAGTTNVQGEEVKK 67

[Close]

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_CYTH3 (Fructose-1,6-bisphosphatase class 1 OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=fbp PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.932e-13
Identity = 31/65 (47.69%), Postives = 41/65 (63.08%), Query Frame = 3

Query:  426 RKLDVVSNEVFSNCLRSSGRTGIIASEEED--VPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +KLDV +N+ F + LRS G+   IASEE    +P+        NY+V+ DPLDGSSNID  V+ G
Sbjct:   70 KKLDVYANDQFISALRSGGQCCAIASEENTDIIPIENNGHSKSNYVVLIDPLDGSSNIDVNVAIG 134

HSP 2 Score: 37.3502 bits (85), Expect = 1.932e-13
Identity = 22/71 (30.99%), Postives = 43/71 (60.56%), Query Frame = 2

Query:  224 KRSSYEIETLTNWLLKQEQSGVIDA--ELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            +R+   ++TL  ++  + Q  V  A  +L+ +L+ I+ A K I   V +AG+ ++ G++G +NVQ E+ K+
Sbjct:    2 ERNLSTVKTLVQFIT-ESQKHVFGASGDLSKILNDIAVAAKIINREVNKAGLLDILGMEGGMNVQNEEVKK 71

The following BLAST results are available for this feature:

BLAST of CF417413 vs. ExPASy Swiss-Prot

BLAST of CF417413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237


Match Name	E-value	Identity	Description
F16PA_BORPA	1.146e-13	42.03	Fructose-1,6-bisphosphatase class 1 OS=Bordetella ...	[more]
F16PA_BORBR	1.146e-13	42.03	Fructose-1,6-bisphosphatase class 1 OS=Bordetella ...	[more]
F16PA_ALISL	1.146e-13	45.45	Fructose-1,6-bisphosphatase class 1 OS=Aliivibrio ...	[more]
F16PA_ENTS8	1.146e-13	45.59	Fructose-1,6-bisphosphatase class 1 OS=Enterobacte...	[more]
F16PA_KLEP7	1.146e-13	45.59	Fructose-1,6-bisphosphatase class 1 OS=Klebsiella ...	[more]
F16PA_KLEP3	1.146e-13	45.59	Fructose-1,6-bisphosphatase class 1 OS=Klebsiella ...	[more]
F16PA_ENT38	1.146e-13	45.59	Fructose-1,6-bisphosphatase class 1 OS=Enterobacte...	[more]
F16PA_VIBSL	1.489e-13	45.45	Fructose-1,6-bisphosphatase class 1 OS=Vibrio sple...	[more]
F16PA_CHLPB	1.489e-13	42.86	Fructose-1,6-bisphosphatase class 1 OS=Chlorobium ...	[more]
F16PA_CYTH3	1.932e-13	47.69	Fructose-1,6-bisphosphatase class 1 OS=Cytophaga h...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-343 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_H10 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417413 ID=CF417413; Name=CF417413; organism=Citrus sinensis; type=EST; length=695bp
GCAGAGGGCCAAAATGGTTGCAGCAGCAGCGACAGCATCATCACAGCTTC
TCTTTTCAAGCTCTCACTCTTTCTCTCGGCTCTCTCCTTACCAAATATGT
GTCTTCGACTCCAAAGCACTCGTGTCGTCATGTCCCAGCAACGTTTTGAA
GAGAAGACATGTTGGTGTTGCTGCTGGGGTTCGGTGCATGGCTGTTGGGA
CAACATCGGAGGTTGCAACCAAGAAGAGAAGTTCGTATGAGATTGAAACG
CTGACAAACTGGCTGTTGAAGCAAGAACAGTCTGGCGTTATTGATGCTGA
GCTCACTATTGTGCTTTCCAGCATTTCAACGGCGTGCAAGCAGATTGCTT
CTTTGGTGCAAAGAGCTGGCATTTCCAACTTGACTGGAATTCAGGGTGCT
GTCAATGTTCAAGGCGAGGACCAGAAGGAAGCTCGACGTCGTTTCAAATG
AGGTGTTCTCAAACTGTTTGAGATCAAGTGGGCGAACCGGGATTATAGCG
TCAGAGGAAGAGGATGTACCAGTGGCGGTAGAAGAGAGCTACTCTGGAAA
CTATATTGTAGTTTTTGATCCACTTGATGGATCATCCAACATTGATGCTG
CAGTGTCTACTGGNATCCATCTTTGGCATATACAGCCCAAATGATGAGTG
TCTTGCCGATATTGGTGATGATCCTACTCTGGGCAACACTGAACT