CF417413 | Citrus Genome Database

Overview


Name	CF417413
Unique Name	CF417413
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	695

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_VIBHB (Fructose-1,6-bisphosphatase class 1 OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=fbp PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 1.933e-13
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 3

Query:  423 RRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGN--YIVVFDPLDGSSNIDAAVSTG 614
            ++KLDV +N+ F   L +  +   +ASEEED  VA  +  + N  Y+V+ DPLDGSSNID  VS G
Sbjct:   65 QQKLDVYANDKFKAALEARDQVCGVASEEEDEAVAFNKELNQNAKYVVLMDPLDGSSNIDVNVSVG 130

HSP 2 Score: 39.2762 bits (90), Expect = 1.933e-13
Identity = 22/64 (34.38%), Postives = 37/64 (57.81%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            + TL  +++ KQ        +L+ +L+SI  A K +   +  AG+ ++TG  G  NVQGEDQ++
Sbjct:    4 LRTLGEFIVEKQADFPHASGDLSSLLASIRLAAKIVNREINAAGLGDITGAVGTENVQGEDQQK 67

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_SALTY (Fructose-1,6-bisphosphatase class 1 OS=Salmonella typhimurium GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.934e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 40.0466 bits (92), Expect = 1.934e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSQATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_SALSV (Fructose-1,6-bisphosphatase class 1 OS=Salmonella schwarzengrund (strain CVM19633) GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.934e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 40.0466 bits (92), Expect = 1.934e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSQATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_SALPK (Fructose-1,6-bisphosphatase class 1 OS=Salmonella paratyphi A (strain AKU_12601) GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.934e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 40.0466 bits (92), Expect = 1.934e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSQATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_SALPB (Fructose-1,6-bisphosphatase class 1 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.934e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 40.0466 bits (92), Expect = 1.934e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSQATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_SALPA (Fructose-1,6-bisphosphatase class 1 OS=Salmonella paratyphi A GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.934e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 40.0466 bits (92), Expect = 1.934e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSQATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_SALNS (Fructose-1,6-bisphosphatase class 1 OS=Salmonella newport (strain SL254) GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.934e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 40.0466 bits (92), Expect = 1.934e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSQATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_SALHS (Fructose-1,6-bisphosphatase class 1 OS=Salmonella heidelberg (strain SL476) GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.934e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 40.0466 bits (92), Expect = 1.934e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSQATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_SALEP (Fructose-1,6-bisphosphatase class 1 OS=Salmonella enteritidis PT4 (strain P125109) GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.934e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 40.0466 bits (92), Expect = 1.934e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSQATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

BLAST of CF417413 vs. ExPASy Swiss-Prot
Match: F16PA_SALDC (Fructose-1,6-bisphosphatase class 1 OS=Salmonella dublin (strain CT_02021853) GN=fbp PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.934e-13
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 3

Query:  411 KARTRRKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTG 614
            +   ++KLD+ +NE     L++      IASEEED  V  E      Y+V+ DPLDGSSNID  VS G
Sbjct:   58 QGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEHAKYVVLMDPLDGSSNIDVNVSVG 125

HSP 2 Score: 40.0466 bits (92), Expect = 1.934e-13
Identity = 23/64 (35.94%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  242 IETLTNWLL-KQEQSGVIDAELTIVLSSISTACKQIASLVQRAGISNLTGIQGAVNVQGEDQKE 430
            ++TL  +++ KQ +      ELT +LS+I    K I   + +AG+ ++ G  GA NVQGE Q++
Sbjct:    1 MKTLGEFIVEKQHEFSQATGELTALLSAIKLGAKIIHRDINKAGLVDILGASGAENVQGEVQQK 64

The following BLAST results are available for this feature:

BLAST of CF417413 vs. ExPASy Swiss-Prot

BLAST of CF417413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 237


Match Name	E-value	Identity	Description
F16PA_VIBHB	1.933e-13	46.97	Fructose-1,6-bisphosphatase class 1 OS=Vibrio harv...	[more]
F16PA_SALTY	1.934e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Salmonella ...	[more]
F16PA_SALSV	1.934e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Salmonella ...	[more]
F16PA_SALPK	1.934e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Salmonella ...	[more]
F16PA_SALPB	1.934e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Salmonella ...	[more]
F16PA_SALPA	1.934e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Salmonella ...	[more]
F16PA_SALNS	1.934e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Salmonella ...	[more]
F16PA_SALHS	1.934e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Salmonella ...	[more]
F16PA_SALEP	1.934e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Salmonella ...	[more]
F16PA_SALDC	1.934e-13	44.12	Fructose-1,6-bisphosphatase class 1 OS=Salmonella ...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-343 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-004_H10 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417413 ID=CF417413; Name=CF417413; organism=Citrus sinensis; type=EST; length=695bp
GCAGAGGGCCAAAATGGTTGCAGCAGCAGCGACAGCATCATCACAGCTTC
TCTTTTCAAGCTCTCACTCTTTCTCTCGGCTCTCTCCTTACCAAATATGT
GTCTTCGACTCCAAAGCACTCGTGTCGTCATGTCCCAGCAACGTTTTGAA
GAGAAGACATGTTGGTGTTGCTGCTGGGGTTCGGTGCATGGCTGTTGGGA
CAACATCGGAGGTTGCAACCAAGAAGAGAAGTTCGTATGAGATTGAAACG
CTGACAAACTGGCTGTTGAAGCAAGAACAGTCTGGCGTTATTGATGCTGA
GCTCACTATTGTGCTTTCCAGCATTTCAACGGCGTGCAAGCAGATTGCTT
CTTTGGTGCAAAGAGCTGGCATTTCCAACTTGACTGGAATTCAGGGTGCT
GTCAATGTTCAAGGCGAGGACCAGAAGGAAGCTCGACGTCGTTTCAAATG
AGGTGTTCTCAAACTGTTTGAGATCAAGTGGGCGAACCGGGATTATAGCG
TCAGAGGAAGAGGATGTACCAGTGGCGGTAGAAGAGAGCTACTCTGGAAA
CTATATTGTAGTTTTTGATCCACTTGATGGATCATCCAACATTGATGCTG
CAGTGTCTACTGGNATCCATCTTTGGCATATACAGCCCAAATGATGAGTG
TCTTGCCGATATTGGTGATGATCCTACTCTGGGCAACACTGAACT